Busch Lab

ZMP

jhdm1da

Ensembl ID:
ENSDARG00000018111
ZFIN ID:
ZDB-GENE-030131-9829
Description:
Lysine-specific demethylase 7A [Source:UniProtKB/Swiss-Prot;Acc:Q5RHD1]
Human Orthologue:
JHDM1D
Human Description:
jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:
Mouse Orthologue:
Jhdm1d
Mouse Description:
jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae) Gene [Source:MGI Symbol;

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa15622 Essential Splice Site Available for shipment Available now
sa9752 Nonsense Available for shipment Available now
sa10471 Nonsense Available for shipment Available now
sa10721 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa15622
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002851 Essential Splice Site 154 613 None 14
ENSDART00000113426 Essential Splice Site 154 846 None 21
ENSDART00000123801 None 154 188 4 4
ENSDART00000130409 Essential Splice Site 154 875 None 19
Genomic Location (Zv9):
Chromosome 4 (position 21441677)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22785012
GRCz11 4 22505987
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AAACTGCCCCCYCCATCAKTCTCTGTCAGTGATGTGGAGCATWACGTTGG[T/G]AAGATTTWAGAGTGTGTGTTTGTGTGCRTTGAATTTAMTGTCTACCTGAT
Long Flanking Sequence:
AATTATTGTCCATGCAGTTTGTTATACAGCTCTAAGTGATAAAAAACATCCAGTTGAGGTTTTGATTCTCAAAAAATAGTGGACTTGTTGTCATTTATATGAATAGTCTAATGCCTCATTCACACTAGCAGAGAATGTGGCCTGCTCCTTTAAAAGTATGCATAAGGAGACTTTTATCCAAATAAAAGTACATTCTTTCTATCAGTTTTTGTCTCTCTTTGGTATCAAACCCACAGCTTTTGCTATACTAGCACACAAACTTTATTATTTTGACTACAAAAACCAATAATGACATTATTGCTCTTACTCGATCAGACTTTTGAATGTTGCCTCTTCCACAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGG[T/G]AAGATTTTAGAGTGTGTGTTTGTGTGCATTGAATTTACTGTCTACCTGATGACTCCCAGGAGAGTATTTGGGCTTTTGGGACACTACAGTGATATTAGTATTTAAATCAATAACACATTGGAACTTGTACAAAATGGTTTGCCTGTATATGGTTTTCTGGCCTCAAAAAGTGTAATGCTGCTTTATTTTTACCATTTATTAATATTTGTATTGCATATTTGCTTTATTCTGTGCTAAAATAATGGCCTATCATATGTTTTTGCTGTGGTTTACTGGAGAAGTACTGCAATGGCATTCAGTGTAACAATGTTGTTTTTTTATTTTAATTAATTTTCATTTTATTAATTATAAAGTGTTTAAAATGTAACAACGTTTACTATTATCCATTATTTTTTTTATTCGTTTTGAAGAAATAACTTATAAGTATTAGTTATGACCATGTGACTTGAGTTATGATGATGAAGTTTATCTCTGAAATCCCAGGAATCCATTTAGTTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9752
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002851 None None 613 None 14
ENSDART00000113426 None None 846 None 21
ENSDART00000123801 Nonsense 183 188 4 4
ENSDART00000130409 None None 875 None 19
Genomic Location (Zv9):
Chromosome 4 (position 21441590)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22784925
GRCz11 4 22505900
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AMTGTCTACCTGATGACTCCCWKGAGAGTATTTGGGCTTTTGGGACACTA[C/A]AGYGATATTAGTATTTAAATCAATAACACATTGGAACTTGTACAAAATGG
Long Flanking Sequence:
TTGTCATTTATATGAATAGTCTAATGCCTCATTCACACTAGCAGAGAATGTGGCCTGCTCCTTTAAAAGTATGCATAAGGAGACTTTTATCCAAATAAAAGTACATTCTTTCTATCAGTTTTTGTCTCTCTTTGGTATCAAACCCACAGCTTTTGCTATACTAGCACACAAACTTTATTATTTTGACTACAAAAACCAATAATGACATTATTGCTCTTACTCGATCAGACTTTTGAATGTTGCCTCTTCCACAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTAAGATTTTAGAGTGTGTGTTTGTGTGCATTGAATTTACTGTCTACCTGATGACTCCCAGGAGAGTATTTGGGCTTTTGGGACACTA[C/A]AGTGATATTAGTATTTAAATCAATAACACATTGGAACTTGTACAAAATGGTTTGCCTGTATATGGTTTTCTGGCCTCAAAAAGTGTAATGCTGCTTTATTTTTACCATTTATTAATATTTGTATTGCATATTTGCTTTATTCTGTGCTAAAATAATGGCCTATCATATGTTTTTGCTGTGGTTTACTGGAGAAGTACTGCAATGGCATTCAGTGTAACAATGTTGTTTTTTTATTTTAATTAATTTTCATTTTATTAATTATAAAGTGTTTAAAATGTAACAACGTTTACTATTATCCATTATTTTTTTTATTCGTTTTGAAGAAATAACTTATAAGTATTAGTTATGACCATGTGACTTGAGTTATGATGATGAAGTTTATCTCTGAAATCCCAGGAATCCATTTAGTTTTTAAATATGTTCATATAGTCATCAACAGTTAAATTATTGAATAAATACTGTTTTTGGTGAACTCTGGAAGTACTCTAGTATTTTAAAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10471
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002851 Nonsense 337 613 8 14
ENSDART00000113426 Nonsense 337 846 8 21
ENSDART00000123801 None None 188 None 4
ENSDART00000130409 Nonsense 337 875 8 19
Genomic Location (Zv9):
Chromosome 4 (position 21432285)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22775620
GRCz11 4 22496595
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCT[T/A]GCATAACTTAAACATAGACATGCAGCTCAGGTGCGATCCTTCAGTCGSGG
Long Flanking Sequence:
AGTTTTATAAATTTATATATTTAAAATATTTAGGTGTTCCTTTCTGACCAGCCTGGAATAAATTGAAACAAAATAAAATTACATTTAAAATTACATTTCAATATGTTTAATGTCATTTATTTAATCATTAGATTTTTAAACAGACGTGTACAAAGTAAAACTACAATTAAATAAAATGGTAAATCTATTTGAAAATAATTATTTAATGTTTACTCATTTGATCTGATTCAAATTAAATGTATTTAAATTAATGTGATGAATCTTTCTAAATAAAATGTATAAATTAATTTTAATACTTGATGAATATAATGAATAACCTTAATGAATATGTCTGATATATATGCAGAGACATTGCTAAAAACTAAAAGGTTGAAAGTTTTTTTTTTAACTGGAATTGATGATTAGAGTAAGGTTAGCTTATGTGTGTTTGTCTCCCTCTACAGGCTGGATTCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCT[T/A]GCATAACTTAAACATAGACATGCAGCTCAGGTGCGATCCTTCAGTCGCGGTCTTTCTGAAAATCTTATACTTACACACTCAGCGTGTGTGTGTTTATAGATGTGTGTTTTCCTGACAGATTTGATCTGATTTCAGGTGTTATGAGATGGAGCGCAGACTGAAGACTCCAGATCTCTTTAAGTTCCCATATTTTGAGGCCATCTGCTGGTATGTGGCCAAAAACCTGCTGGAGACTCTTAAAGGTGAGGTGCATTTTATCATTGAAAAGTTAAATGTTTCAAATGAAAACAATGTAATATATTGTATTATACAAGCATGAAGAAAATTTGTTGTTGTTTTTATTTAGTTTGTGTGTGTATATTCGTATGCTGACTCTCTTAAGATGGAGTTAATAAACTGTTGTAAATATTTAATACATTTTTGTGTGGTTTAAAAAAAATAAATGACTAAAATGAATGCTCATTAAATTAAATCGATTCATAAAATGTGGAAAAAACTCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10721
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002851 Essential Splice Site 531 613 None 14
ENSDART00000113426 Essential Splice Site 508 846 None 21
ENSDART00000123801 None None 188 None 4
ENSDART00000130409 Essential Splice Site 531 875 None 19
Genomic Location (Zv9):
Chromosome 4 (position 21430176)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22773511
GRCz11 4 22494486
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCACACACTGGAGGTGTTGAAGAGACTRGAGGTTGGCCAGCTGAAGGAGG[T/C]CAGTGCTGTGGACACTYTATTCTTTATCAMGTTTTTTTTTNNNTGTTTGTTTG
Long Flanking Sequence:
TATTTGAATTACATTGTATTAAAATGATTTTGTTGATTTTGAAATGTGAAATGTTGAATTCTCTTTTTTGTAAATTATTAAACTAAAAATGTATTATATATTTATTAATGAATTCAAAAAATGAAAATAATAATGTTTTTGTTTTAATAAGTCAGTGTATATTAATACAAGATGTAATTGGGCTCTTAAAACAGCTCTTAAATGTGATTTGCTGTGTTGTTTTCTTTAACAGGACGATTCCAATAAAGCTGTGAAAACTCAGGGAAGTGCTGAATGTTCTTTATCCCGCTCGACACTGGAGAAAGGAGATCAAGCCCAACAGGCTGCTCGGCGACTGCAAGATCATCATCATCACAGACGCCGCCACCACCATCACCACCATCATCATCATCATCACCACCACCATCATCACAGCCGAAAACTGCCCTCAAACCTGGACGTGCTGGAGCTCCACACACTGGAGGTGTTGAAGAGACTGGAGGTTGGCCAGCTGAAGGAGG[T/C]CAGTGCTGTGGACACTCTATTCTTTATCACGTTTTTTTTTTGTTTGTTTGTTTTCTGTATGTTAAATATGCTTAATGGCATTATATCATTTGTATTGTTTTTTTTTTCTATAGACAAGATTTTGTCTCTCTTTCTATCACTCTATTCTTAAAAAAAATACTGCAAGCTGCCAGAAAAACAAAAACCTTTTGGTAGAATCAAATGTTCATAATCTGGCATGTTGTGTGTGAACATGTTCAGAATACAGATGGGAATATACCTGTGCAGTCTGGTGTATGTAGAAGCTGCTGAAGTGGAGATTTATGACTCTAAAACCTCTCAAGAAACCTTTTATAAATATGTATTGCAATTAAAATCTACAGACACAAATTGATCAAATGCAACAAAAGAAAGACTAAAAAGTGTATTTTTTGTTGTTTGCAATTAGGCTAAATTTTGTTTTGTTTTTTATTTAAAAGCCCAAAGTCTCAGCTCAAAGTCAAAACTGACAGGTGCATGAA
Associated Phenotype:
Not determined