ZMP
si:ch211-207c15.3
Ensembl ID:
ZFIN ID:
Description:
upstream-binding protein 1 [Source:RefSeq peptide;Acc:NP_001108046]
Human Orthologue:
UBP1
Human Description:
upstream binding protein 1 (LBP-1a) [Source:HGNC Symbol;Acc:12507]
Mouse Orthologue:
Ubp1
Mouse Description:
upstream binding protein 1 Gene [Source:MGI Symbol;Acc:MGI:104889]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa39259 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa39260 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa39259
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000108775 | Essential Splice Site | 39 | 544 | 2 | 16 |
Genomic Location (Zv9):
Chromosome 19 (position 44420241)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 19 | 43248009 |
| GRCz11 | 19 | 42817446 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGGTTCATCTCATAACCTCAGTTTCTCTGTGTGTCTGTCTCTGTTTCTCA[G/A]TGATGTGTTGGCTCTGCCCATCTTTAAGCAGGAAGATGTGAGCGTTCCTG
Long Flanking Sequence:
CTCTTTTTAGGTGTTTACTATAACACAGACAACATATACAGTTATTTTAAACACTTTCAATAGTGTTTTGTAAAAATTCAAAGGGTTTTCTTTAAAATGATACCAAATGTTTGCATTTACACCTCTGCATGTGGATTTGGGAAGCTTTTAAATTTGGGTCTGCAAAATCCAGGCGGAAATCCCAAAATAGCAGCAGAGTGTAACTGGTTAACTGCAGTGTAATGATATACATATTTTTTAAAATCGATAGATCTGCGACCTCCCTTGTATTCTTCTTGGTTTGTACTTCAGTAGTCGTCTGAGAACATGTCTCTCTACGTCTGTGGGTTTGCGGTGTGCACAAGCTTGTCATGTGCCGTGAGGTTTTTAAAGTGTCTATAGGTGTAAGGTGGCAGGTGCTTATATACCTGTTTCCATGACAACCATTTCCATGCTGATGGCGAGGGTCTGTGGTTCATCTCATAACCTCAGTTTCTCTGTGTGTCTGTCTCTGTTTCTCA[G/A]TGATGTGTTGGCTCTGCCCATCTTTAAGCAGGAAGATGTGAGCGTTCCTGTGGAGTCCGACACCAAGAATCCTCCGTTTCAGTATGTGATGTGCGCCGCCACCTCACCAGCTGTTAAACTGCACGAGGAGACGCTCACCTACCTGAACCAAGGTATGTGTTTAGAGCTGGACAGCTAAAGGAACACTCCATTTCTTTTGGAAATAGGCTCATTTTACAGCTTCCTGATGCTTCCTGAATAAATCGGGCTATCTGACACTAATTGACGCGTGAACATTATGAGTTTACTTGATTCACTCGCGTGTCAAATCCACTTCATTCGTGTGTCAAATTCACTTCACAATAGACATGGACACATCATGGTGTCAGCCCGGTGACTCTAGCTTTGTTGCTAAATGGCTAACATGGATTTTATTGAGAGATTAGCTGTGTTTATGTGCTGATAAACAGCGTAGATTCATTTAGCGCAGTGTCTGAGTTCACTACATCCTTTCAGAGGTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa39260
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000108775 | Essential Splice Site | 366 | 544 | 11 | 16 |
Genomic Location (Zv9):
Chromosome 19 (position 44434669)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 19 | 43262437 |
| GRCz11 | 19 | 42831874 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTCCTATTCTAATTAGCATTTAAAAATTAAATGTGCACTTTTATTATACA[G/A]TCTCTCAGTCCTACGGCCTCCATACAGGACACACAGAAGTGGCTCCTTAA
Long Flanking Sequence:
TGACTGTTTTTATCAAGTGTGATTATAAAAATAGAATTAATTCATTTTTGGCATTAGAAGCTGGCTATATTTACAGGCTGTTGCCACTACTGTTTAAATCTTATTAAGGTTATTTGTGCATTATAGACCCTCTTTAAAACAAACAAACAAACAACAAAAGCAGAATTTTGACATCAGCTCTGAATTTTAAGAAGAAAGTCCATGAATGAAAAATTGCAAACCTCACAATTTAGCCTTTTCCTCTTATATTGGGATTTCTATTTCTTTTTTTTTTTAATTCAACATATTTCAATAGCAGTCCAAATTGTGGGATAAAAAAAATCATGATTACTTTTTTATTTCATGGCATCTTTTCAGCCTTGCTTAATATATATTTCTCTTATAATCTGCAGTTTTACAATATAATGTGCTTTTTTAAAAAGGTTAATTATATATTTTAAGAGGAAAATGCTCCTATTCTAATTAGCATTTAAAAATTAAATGTGCACTTTTATTATACA[G/A]TCTCTCAGTCCTACGGCCTCCATACAGGACACACAGAAGTGGCTCCTTAAGAACAGATTCAACTCCTACAGTCGTGTTTTCGCCCATTTCTCAGGTATTTACACAGACACAGTTTCATGTTGTAAAAATCAATGTTTTTTTGAATCAATACTTAAAAATGTAGCTACCTGTACCTACATAAATATCACATTACTGCATAAATACCACCACATCCCATACCATCCTTGATGTGACTTTTTTTTTTTTACAGTAGAGCATTAAAGGTCCCAACTAACTTTTTTTAAATGTTAGTATCAGTATTTTTAGTTCTTAGCTAGCTTCTATAAGCTAGTGTGCTCCAAAACAATGACAAAATTCACGTTTAGAAGATATAAGACTGATATAAACATGTAAAGCTTGTAGTTTGTCACTTCTGCCTAAAGGCTGATTTATATTTCTGTGTCAAACACACGCGTATGGTCCGGCGCAGCCTTCGGTCACAGCCCTTGCCGTGACTGACA
Associated Phenotype:
Not determined