Busch Lab

ZMP

slco1c1

Ensembl ID:
ENSDARG00000016749
ZFIN ID:
ZDB-GENE-041210-50
Description:
solute carrier organic anion transporter family member 1C1 [Source:RefSeq peptide;Acc:NP_001038462]
Human Orthologue:
SLCO1C1
Human Description:
solute carrier organic anion transporter family, member 1C1 [Source:HGNC Symbol;Acc:13819]
Mouse Orthologue:
Slco1c1
Mouse Description:
solute carrier organic anion transporter family, member 1c1 Gene [Source:MGI Symbol;Acc:MGI:1889679]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa33362 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa9443 Nonsense Available for shipment Available now
sa8495 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa33362
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000039083 Essential Splice Site 139 710 4 15
ENSDART00000134442 Essential Splice Site 139 689 4 15
ENSDART00000141760 None None 90 None 3

The following transcripts of ENSDARG00000016749 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 4 (position 2573100)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 2771979
GRCz11 4 2702090
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGG[T/G]AAGTCAGAGTGTGTGTTTCTGTCACAGCGAGGGTCACATGGATCCAGTTT
Long Flanking Sequence:
GGAAAAAGTGACTTTTAAGATCATTTTGAATAGTTTAAAGTGATTTATTGTCTGGGTTGGTGTTATATATTATGCTAAAAAAGTTATTTTCTGTTATTTTACAGAATTATTTCTCTATATAATAATATTTCTTATACATTATATTATTTAAAACTAATAAATGTCACTAAAAGTCACTTTGTTAAACAGTTGAGTTGAATTTTCAACATCTACAGAGCAGAGATCAACATCCCATAATGCAATTCATAACCCTAAATAAACAGAAAATGTTACAAAATATGCAAACAGTTAATTAACAGATATATTTTACAGTGTATGTGTATATAAACATGGCTAGTCTAACCAGCTCTCCTGCTATCTTTCTAGGCAACTTGTTAGTGATCGCCTTTGTGAGTTACTTTGGTGCCAAACTTCACCGTCCGAAAATCATCGCCATCGGCTGCCTGTTGATGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGG[T/G]AAGTCAGAGTGTGTGTTTCTGTCACAGCGAGGGTCACATGGATCCAGTTTGATCTCGTTAAAGAGCGCAGATGCCTTTGAGTTTGCGGTCAGACTCTTGTGTCGTCTCTGTGTTTCTTGGCATCGTGAAGCTGCTCTATGCTTTAGTGGATGTAAAGAACAAGCTGGATTTTGCCTGACTTTCACATTTACCTTAGAGTATTATTGAGCGTGTAGCAGGTTTACAGTTAATACACTGCGCTTATAGATGTCCCCAAATGATGTGGTTTTCCAAATGATGAACAGATTCAGGAAATTTTTACAGTATTTCCTATAATATTTTTTCTTCTGGACAAAGTTTTATTTGTTTTATTTTGGCTAAAATAAAAGCAGTTTTGATTTTGTTTAAACCATTTTAAGGTCAATATTATTAGCCCCTTTAGCAATATTTGTTTTGGATTGTCTACAGAACACACCACTGTTATACTATGACTAGCCTAATCACTCTAACTTTACCCTAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9443
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000039083 Nonsense 297 710 8 15
ENSDART00000134442 Nonsense 297 689 8 15
ENSDART00000141760 None None 90 None 3

The following transcripts of ENSDARG00000016749 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 4 (position 2566284)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 2765163
GRCz11 4 2695274
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTT[T/A]GCCACTGCCAGAGAGAMGACTGAGCAAATACTCTCCGGAGCGYAACAGCT
Long Flanking Sequence:
TTTATTTTGTTTTATTTTGTTTTGTTTTGTTTTGTTTTCATTTTATTTATATTGTTTTATTATTATTTAAATTTTATTTTATTATTTTATTTTATTTAATTACATTTTATTGTTTTTTATTTTATTTAATTTTTTATTTATATTAAATAAAAAATGTTAAACTTCATTTACTTTGTTTCATTTAATTAATTTATTATTTTATTAAAAAAGATTTTTTATAATTTTTAATTAATTTAATTTAATAATATAATTAAATAATTAAAATAATAAAATTAAATAATTTGATAATTTTTTTTAATTGTATTTACTTTATTTTTTAATTAATTCATTATTTATTATTAATTATTATTAATTTATACTGTGTTTTTCTGTCCTCCCAGAGAGCATCAGCATCACTCCAGGAGACGCGCGCTGGGTCGGCGCCTGGTGGCTAGGCTACCTGATTGCCGGATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTT[T/A]GCCACTGCCAGAGAGAAGACTGAGCAAATACTCTCCGGAGCGCAACAGCTTCATCAAAGACTCGGCTCTGCTGGAGCACAAATACCAGGCAGACGAGCCGGCTAACTTCCTGGAAATGGCCAAAGGTAAAGCGCCTCAAGTTCACTGGAAGAGTAAAGAGTTCAGATTTCTGACATCGAGGTCATTATAATGTCATTACAACTGTAGCAATAATATATCAACCTTTACACTGGGTGTTATTTTTTAGGAAGTTAAAAATGAAGATTTTATATATCAGATGCATTTACTTGAGAAACAAAAAGACTTTTTATGCACGTATATCTATATGTCTTTTTGCTTCCCAAGGAAACTTATATGATTTATGTATGTGTGGATATTCTGTGGGAAAACAAGACACAACAAGACACAAATACCTGTTTAAAAAACACATTTTTGCAGTGAAATGATTACACAAGTGCGTAAGAAACAAAGCAATGTTTTTACACAGCATAAAATGATAG
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa13960
Status:
Less stringent filtering
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000039083 Nonsense 356 710 9 15
ENSDART00000134442 Nonsense 356 689 9 15
ENSDART00000141760 None None 90 None 3
ENSDART00000039083 Nonsense 356 710 9 15
ENSDART00000134442 Nonsense 356 689 9 15
ENSDART00000141760 None None 90 None 3

The following transcripts of ENSDARG00000016749 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 4 (position 2565174)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 2764053
GRCz11 4 2694164
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTA[T/A]CTGTGCGTGACCATCATCCAGTTCAACTCACTGAWCGGCATGGTCACATA
Long Flanking Sequence:
TGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGATAGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAATTGAATTGTAGATAGTTGAATTGTATGTACAGATTTGTTAGAGATATACAAGTGCTGTGTACACAGTTTATTACTACAAACTATGCATTATTGAAATTAAAAGAAATCTACACTGACCTGAATGTGTAACACGCTCTGCTTTTGTTATTTCCAGACTTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTA[T/A]CTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATATAAACCAAAATACATCGAGCAGCATTACGGACAGTCCGCATCCAAAGCCAACTTCCTCATGGGTTCGTCCTCCTCTTTCAAACACACACTTGTCAATTCAACTCAAGTTTATTTCTATAGCGCTTTTCAACATAATTATTATTTCAAGTAGCTTTACAAAAGATGCACATTATTGCATTACAATTAAAATCATTACTAATAGCTTTAATTAATTAATTAGTGACTAATAGCTTTTAACAGTTATTATATATAGTTAAAGTCAGAATTATTCACCCTCCTGTGAATTATTATTAATAAATATTTCCCAAATGATTCTGGAATTATTTACTGTATTGCCTACAATGTTTTTTCTTTTGGATAAAGTCTGATTTGCTTTATTTTGGCTAGAATAAAAGCAGTTTTTAAATTTTTTTTTCAATATTAATAGCCTTAATAGCCCCCCTAACCTGT
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa26201
Status:
Less stringent filtering
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000039083 Nonsense 356 710 9 15
ENSDART00000134442 Nonsense 356 689 9 15
ENSDART00000141760 None None 90 None 3
ENSDART00000039083 Nonsense 356 710 9 15
ENSDART00000134442 Nonsense 356 689 9 15
ENSDART00000141760 None None 90 None 3

The following transcripts of ENSDARG00000016749 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 4 (position 2565174)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 2764053
GRCz11 4 2694164
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTA[T/G]CTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATA
Long Flanking Sequence:
TGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGATAGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAATTGAATTGTAGATAGTTGAATTGTATGTACAGATTTGTTAGAGATATACAAGTGCTGTGTACACAGTTTATTACTACAAACTATGCATTATTGAAATTAAAAGAAATCTACACTGACCTGAATGTGTAACACGCTCTGCTTTTGTTATTTCCAGACTTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTA[T/G]CTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATATAAACCAAAATACATCGAGCAGCATTACGGACAGTCCGCATCCAAAGCCAACTTCCTCATGGGTTCGTCCTCCTCTTTCAAACACACACTTGTCAATTCAACTCAAGTTTATTTCTATAGCGCTTTTCAACATAATTATTATTTCAAGTAGCTTTACAAAAGATGCACATTATTGCATTACAATTAAAATCATTACTAATAGCTTTAATTAATTAATTAGTGACTAATAGCTTTTAACAGTTATTATATATAGTTAAAGTCAGAATTATTCACCCTCCTGTGAATTATTATTAATAAATATTTCCCAAATGATTCTGGAATTATTTACTGTATTGCCTACAATGTTTTTTCTTTTGGATAAAGTCTGATTTGCTTTATTTTGGCTAGAATAAAAGCAGTTTTTAAATTTTTTTTTCAATATTAATAGCCTTAATAGCCCCCCTAACCTGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8495
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000039083 Essential Splice Site 459 710 11 15
ENSDART00000134442 Essential Splice Site 459 689 11 15
ENSDART00000141760 None None 90 None 3

The following transcripts of ENSDARG00000016749 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 4 (position 2560858)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 2759737
GRCz11 4 2689848
KASP Assay ID:
2259-4355.1 (used for ordering genotyping assays)
KASP Sequence:
GCATTAGAGGAWAAATKAATAATTGCTTCKCTAATGCTTGTGTGTCCATC[A/C]GGACRGAGAGTCTGTTTATGGCRGACGGCTCTCTGCGAGCGTCCTGCAAC
Long Flanking Sequence:
CCCTGCTGAAAAATCCAGCCTAAACCAGCCTAGGCTCGTTGACTGGTTTTAGCTGGTCGACCAGGCTGGTTTTAGAGGGGTTTTGGCCACTTCCAGGCTGGTTTCCAGCCATTTCCAGCCTGGTCTTAGCTGGGAGATGACCAGCTAAAACCAGCTTGACCAGCCTAGCCAAGCTGGGAGTCCAGCCAAAACCAGCTAAATCCAGCTTAAACCAGGCTGGTCAAGCTGGTTTTAACTGGTTTTAGATGGTCATTTTCCAGCCTGACCAGCTAAGACCAGGCTGGAAATGGCTGGAAACCAGCCTGGAAATGGCCAAAAAGCCCTCTAAAACCAGGCTGGTCAACCAGCTAAAACCAGCCAACCAGCCTAGGCTGGTTTAAGCTGGATTTTTCAGCAGGGCTGTATATTTAGCATAGGTTTTGCTGTGAATATCGCCAATGCTGCTGATAGGCATTAGAGGAAAAATTAATAATTGCTTCGCTAATGCTTGTGTGTCCATC[A/C]GGACGGAGAGTCTGTTTATGGCGGACGGCTCTCTGCGAGCGTCCTGCAACGCAGCCTGTCATTGTCCTGAAAAAAACTGGGACCCGGTGTGCGGAGAAGACGGCCTCACCTACGTGTCCCCGTGCCTGGCTGGATGCCGGACGTCCCACGGCTCAGGAATGGACACGGTGAGCGTGATCCTGAAACAATGGTGTGTGTGTTTGTTGTCCTTTTTTCTTCAAAGACACAATGTGGTGCTCTTGAACTGGGCTTTTTCCCAGCGCTCCCTGAAGGGTGTGTGCACTACCTGTTTGTCTGCAGCTCAAAGGCCAGCTTGAATTTTTGGGCTTCTCTGAAACTTCCTTCCCCGTCTGTCTTTGAGGAGAGCAGGTTTTATTTTTGCGTGTGTTTCAGTGCATCTGAAAGGCTGAGGTATTTTAATGCGCAGACGCTGGTTTCCGCTTCTCATCCTCTGTGTGTGTGTGTGTGTTTCATATCTCCAGCATCTGTTATGTGCTGCG
Associated Phenotype:
Not determined