Busch Lab

ZMP

si:ch211-153c20.4

Ensembl ID:
ENSDARG00000016490
ZFIN ID:
ZDB-GENE-040724-138
Description:
Rab11 family-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q7T005]
Human Orthologue:
RAB11FIP3
Human Description:
RAB11 family interacting protein 3 (class II) [Source:HGNC Symbol;Acc:17224]
Mouse Orthologue:
Rab11fip3
Mouse Description:
RAB11 family interacting protein 3 (class II) Gene [Source:MGI Symbol;Acc:MGI:2444431]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa37950 Nonsense Mutation detected in F1 DNA Not yet available
sa37951 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa37950
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000010764 Nonsense 745 1875 1 13
ENSDART00000136836 None None 1183 None 12
Genomic Location (Zv9):
Chromosome 24 (position 39228608)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 37837697
GRCz11 24 37725594
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCCAGACACACTAACAGATTTAGAGATATCAGATTCACATCAAAATCAC[C/T]AAGCAACTGATTTAGGAAGTCAGTCGGAATATTTGCAGAATGATTTACTC
Long Flanking Sequence:
TCATGGATTTAGAAATCTCGGATTTACATCAAAATCAACAAGATTTAAAAAGCAAGTCTGACTATTTGCTGAATGATTTACTCCATGACAACAATCAGGAACCAAATGCAAAAACTGACGCCTGTCAGGAACAAATCAGTGCTCAAAACAATGAAAACACACTTGTTGAAGATCTCGCTCTTGTGGACCAACGGAATGACTCTTTGACCACGAAATCAAGTGCAATTGCATTCGAAAATAAATCTGAAAAAAATCTAACCAGTCACGATATGGTGCAGAATGTCGAAGCCAAACATCCAACAGATTCATTTGAACTGTCAAAACTGGTGGACTGTGATGCAAATTCACATGATTTTGAATCTGATGCACTTGCACTTGAATTTCAGAATAATCTAACATTTATTCAGACAGGCAACGTTGACGATAACCCTAAGGCAATGGAAAAAGAGATTCCAGACACACTAACAGATTTAGAGATATCAGATTCACATCAAAATCAC[C/T]AAGCAACTGATTTAGGAAGTCAGTCGGAATATTTGCAGAATGATTTACTCCATGACAAGAATCTGGAACCAAGAACTAATGCCTGTCAGGAACAAATCGGTGCTCAAAACAAAGAAAACCCACTTGTGGAAGATCTCGCTCTTGTGGACCAACTGAACGACTCTTTGACTGCAATATCAAGTGCAATTGCATTCGAAAATAAATCTGAAGGAAATTTACTAAGTCATGATACACTGCAGAATGTCGAAGCCAAACCTCAAACAGATTCATTTGAAACCACAAAACTGGTGGACTGTGAAGCAAATTCACATGATTTTGAATCCGATGCACTTGCACTTGAGTTTCACCATAATCTAACATGTATTCAGACAGGCAGCATTGACAATAACCCTAAGGCAATGGAAAAAGAGATTTCAGACACTCTTACAGATTTAATACTCTCAGATTTCCATCAAAATCAACAAGCAACCAATTTAAAAAGTCAGTCGGAATATTTGCAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37951
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000010764 Nonsense 970 1875 1 13
ENSDART00000136836 None None 1183 None 12
Genomic Location (Zv9):
Chromosome 24 (position 39229285)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 37838374
GRCz11 24 37726271
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACCATGAAATCAAGTGCAATTGCATTCGAAAATAAATCTGAAGAAAATTA[T/A]GATACACTGCAGAATATCGAAGCAAAACCTCGAACAGATTCATTTGAAAT
Long Flanking Sequence:
TCAAGTGCAATTGCATTCGAAAATAAATCTGAAGGAAATTTACTAAGTCATGATACACTGCAGAATGTCGAAGCCAAACCTCAAACAGATTCATTTGAAACCACAAAACTGGTGGACTGTGAAGCAAATTCACATGATTTTGAATCCGATGCACTTGCACTTGAGTTTCACCATAATCTAACATGTATTCAGACAGGCAGCATTGACAATAACCCTAAGGCAATGGAAAAAGAGATTTCAGACACTCTTACAGATTTAATACTCTCAGATTTCCATCAAAATCAACAAGCAACCAATTTAAAAAGTCAGTCGGAATATTTGCAGAATGATTTACTCCATGACAACAATCAGGAACCAGGAACTGACGCCTGTCAAGTACAAATCAGTGCTCAAAACAAAGAAAACTTTGTGGAAGATCTCGCTCTCGTGGACCAACTGAATGACTCTTTGACCATGAAATCAAGTGCAATTGCATTCGAAAATAAATCTGAAGAAAATTA[T/A]GATACACTGCAGAATATCGAAGCAAAACCTCGAACAGATTCATTTGAAATTACAAAACTAGTCAACTGTGATGCAAATTCACATGATTTTGAATCCGATGCACTTACACTTGAGTTTCAGCATAATCCAACATGTATTCAGACCGACAACGTTGACGATAACCCTGAGGCAACGGATAAACAGCACTCAAAAACAATAGATCACACAGAGATTCTAGACACACAAATGGATTTGGATATCTCAGATTTACACCAAAATCAACTAGAAACCCGTTTAAAAAGTCAGTCAGACTATTTGCAGACTGATTTAGTCCATGACAACAATCAAAAGCCAAAAACTGATGCCTGTCAGGAACAAAGCAATGCTCAAAACAATGCGAACCCACTTGTGGAAGATCTCGCTCTTGTGAACCCCCTCACTGACTCTTTGACTGTGAAATCAAGTGCAATTGCATTCGATAATAAATCTGAAGAAAATATACCAAGTCATGAAACGCTGCA
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa30138
Status:
Less stringent filtering
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000010764 Essential Splice Site 1555 1875 6 13
ENSDART00000136836 None None 1183 None 12
Genomic Location (Zv9):
Chromosome 24 (position 39279931)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 37889020
GRCz11 24 37776917
KASP Assay ID:
2261-9020.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTCTCTTTTATAGCTCCAGCAAGAGGCTGTCCAGTAAGAAAGCTGCAAG[G/A]TGAGATCCTCCCTCCAAACACAGCAGACGTCAGCCTTAAATTGTTCTCCC
Long Flanking Sequence:
AAGAAGTATCTAAAAAAAGTTAATAGAATAGGTTTTGTATTGTTCTAATTTCTAAAACCAAATTCAATAAGACTATATTGACGACTAAGGTAATGTTTGTGTTTTGGTTAAGAGTTCATGGAAACTCCTGTACTTTAAGCAGCAGTGGGAACTCTGATGTCTGTGAAAACAACAGACAAAGCATTTTCTCCACCTTCAGTCTTTCAGGAACAGAATCTCCTTTCACGCATATACGTTACACCTCTGTAAGAGCATGTGTGTGTGTGTTTGTTTCCGTGTGCTGTGAGGTCATTAGCATTGAAAGAATAGCATTGATGCTGCCTTCGACCTGCTGAAAGAGCTGACGGATCCTCAAACCTGGCTGTTTTTTGACCTGTGCTTTACAGGTCACGGATGGAAAGAGTTTTTTCTTCTTTTTCAGTCTCTTCCTGTGACTCATTTCCTGTTTGTTCTCTCTTTTATAGCTCCAGCAAGAGGCTGTCCAGTAAGAAAGCTGCAAG[G/A]TGAGATCCTCCCTCCAAACACAGCAGACGTCAGCCTTAAATTGTTCTCCCAAAAAAATGATATCATGTAGAACATTAAAGAACATGAAACTGGGGTCATGGTGATTCATATGAAGTCATCCATCTGATAGTCAGAAAAAAATACATTATTATTCATTCATTCATTTTCTTGTCGGCTTAGTTCCTTTATTAATCCGAGGTCGCCACAGCGAAATGAACCACCAACTTTTCCAGCAAGTTTTTTACACAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACATCCACACACAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTACGGACAATTTAGCCCACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCAGAGGAAACCCACACAAATGCAGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGGCCC
Associated Phenotype:
Not determined