ZMP
upf1
Ensembl ID:
ZFIN ID:
Description:
regulator of nonsense transcripts 1 [Source:RefSeq peptide;Acc:NP_998639]
Human Orthologue:
UPF1
Human Description:
UPF1 regulator of nonsense transcripts homolog (yeast) [Source:HGNC Symbol;Acc:9962]
Mouse Orthologue:
Upf1
Mouse Description:
UPF1 regulator of nonsense transcripts homolog (yeast) Gene [Source:MGI Symbol;Acc:MGI:107995]
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa11856 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa11856
Status:
Available for shipment
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For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000021011 | Essential Splice Site | 906 | 1100 | 20 | 24 |
| ENSDART00000138047 | None | None | 557 | None | 13 |
Genomic Location (Zv9):
Chromosome 2 (position 56435088)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 2 | 56098156 |
| GRCz11 | 2 | 56222001 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATATACATMRAAGGCCATRAAGTCCATCTGACAGTGTWAATGTTTGTTTC[A/T]GGGAGCCCGCTTCATGAGTACCGCCATGTATGATGCAAGGGAGGYCATGA
Long Flanking Sequence:
TCAGGTTCTATCTGACATTTTTGTCAAAATTGAGTTATAGACATATTCTTATTAAATGACAACTTATTTACATTTTTTATAAGTTTTTTATAAGTTGTTTACATTTAAAGACTTTTTATTTAAAAAATAAAAAAGATTTTATCTACAAAATTAAACTCTAGCCTGCATATCAAATGCACACACAAGGACCAATCAGGATCAGCTTTCTTTGTCAATTTTCCGGACTGCAACATTGACAGTGGAAAAGACCAAAAGAAATACAAAATCATTAAAGTCAACTAAATAATGCTGCACCACGCAAAATTAAGAAGAAACCTAAAACTGAAAAGATGTGTGTAAATGTGATGATTTGGAAGCTTTTTTTTTTTTACATTGAGATGAAATGTTAAACTTGACATTGTTGAATATAATGTAATATAAGGTGAAATATTTTTATTTGTGTGTGTGTGTATATACATCAAAGGCCATAAAGTCCATCTGACAGTGTTAATGTTTGTTTC[A/T]GGGAGCCCGCTTCATGAGTACCGCCATGTATGATGCAAGGGAGGCCATGATTCCTGGATCTGTGTATGATCGCAGCAGCACTGGTGAGAAACTCATATTAAAGTTTTCTTAGCAGTGGACAATTAGGGGAATGATCATGTTGCCTTGGTTCATTTTATCCGCTAGCTCATTGATCCTCAACCACCGGTCTGTGGGTTAATTGGTACCGGGCTGCACAATAAATCAATAATTATTTCCGTTTTATTTATTTTCTGAGTCTAAACAATCTTTTATTTTAAAAGTCTTTTATTTTGAAAAATGACCCTATTCTCACGGTCACTTGAGCACCCAAATTGAGCCCACAAGCAGCAAAATGTGTAAGAAACAGTCAGTGGAAAGTTTCTTTGCTAAGGGAAAAAGGCCCAGTGAAGGACCCGTAAACTGCCAAGGAATGGATCCACAACCCATTTGTCAACAAATCCAGCATGTCTCTGCAAGAAGGTCAACTGATGGAGGTCGCA
Associated Phenotype:
Not determined