Busch Lab

ZMP

clca1

Ensembl ID:
ENSDARG00000016290
ZFIN ID:
ZDB-GENE-030131-6221
Human Orthologues:
CLCA1, CLCA2, CLCA4
Human Descriptions:
chloride channel accessory 1 [Source:HGNC Symbol;Acc:2015]
chloride channel accessory 2 [Source:HGNC Symbol;Acc:2016]
chloride channel accessory 4 [Source:HGNC Symbol;Acc:2018]
Mouse Orthologues:
AI747448, Clca1, Clca2, Clca3, Clca4, Clca5, Clca6, Gm6289
Mouse Descriptions:
chloride channel calcium activated 1 Gene [Source:MGI Symbol;Acc:MGI:1316732]
chloride channel calcium activated 2 Gene [Source:MGI Symbol;Acc:MGI:1931471]
chloride channel calcium activated 3 Gene [Source:MGI Symbol;Acc:MGI:1346342]
chloride channel calcium activated 4 Gene [Source:MGI Symbol;Acc:MGI:2181989]
chloride channel calcium activated 5 Gene [Source:MGI Symbol;Acc:MGI:2139758]
chloride channel calcium activated 6 Gene [Source:MGI Symbol;Acc:MGI:2139744]
expressed sequence AI747448 Gene [Source:MGI Symbol;Acc:MGI:2139790]
predicted gene 6289 Gene [Source:MGI Symbol;Acc:MGI:3643218]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa9888 Essential Splice Site Available for shipment Available now
sa1839 Essential Splice Site Available for shipment Available now
sa24978 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa9888
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047531 Essential Splice Site 390 908 7 14
Genomic Location (Zv9):
Chromosome 15 (position 14145977)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 14177025
GRCz11 15 14112982
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
YTCCAGRTGGATMCACAAACATGTGTAATGGCCTTCGTCTAGGCTTACAG[G/A]TACCRAATGAATTGWTRATTTTATGWTTGTAGKGCAGGNATTACAGTGNNTT
Long Flanking Sequence:
AAGATGCACTGTCGTTTCTACCACCACTGCCATCGACTCCATCGCCGCCAATATTTAAACTTTTGCAGCGGAAGAAACGGGCTGTTTGTCTCATCCTTGATGTCTCAGGAAGCATGGCAACAGTATGAACACATAAAAAAAAATAATATATATATAAAAAATAAATAATAAATAATATATATATATTGCATTTTGCTAACCTACACACTGAATATCAATGCTCTGAGATGAAATGAAGAAAAAAGAAACACAAATTGTTTTTAACCCTTCTTTAGGAATCTAGAATTCTTCGCATGAGGCAGGCGGCCACACATTTACTGCGGAACTATGTTGAGGAACAGGCCAGTGTTGGAATTGTAAAATTCAGTACTGCAGCTTCTATTGTGAGCTCATTGACTATTATTGAGAGTGATGCCACAAGAGATCATCTCATTAACTTGTTGCCCGAAACTCCAGGTGGATCCACAAACATGTGTAATGGCCTTCGTCTAGGCTTACAG[G/A]TACCAAATGAATTGATGATTTTATGTTTGTAGTGCAGGAATTACAGTGTTTTTTGTGCTAATGCTTTCTGTTTTCCTCAAAACCTTCAGGTACTTTCAGAAGACGACATGGATGCAATAGGAGATGAAATAATTTTTCTGACAGATGGTCAGGCAACAGACGACGTTACATTGTGTATTCCGGATGCAATAAACAGTGGTGCTATTATACACACAATAGCTTTAAGTGACAGTGCACATAATGCATTGCAAGAGATGGCAGACAAAACTGGTAACAAAGTTGTATAATTACAGTAAATTAATTTGTATTACATTAATAGCAGTTTATTTTTTTTAATGCAAAATTTTATATTTTATAAAAATAGGTGGAATATTTTTCTATTCCAAAGATGATTTTACCTCCAACCAATTAATGGATGCATTTGCTTCACTTACATTATCCACTGGAGATCATTCAAATGAACCTGTTCAGGTATGTACAAGTAATCTGTCATTGCTCAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1839
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047531 Essential Splice Site 391 908 8 14
Genomic Location (Zv9):
Chromosome 15 (position 14146065)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 14177113
GRCz11 15 14113070
KASP Assay ID:
554-1830.1 (used for ordering genotyping assays)
KASP Sequence:
GAATTACAGTGTTTTTTGTGCTAATGCNTTTCTGTTTTCCTCAAAACCTTC[A/T]GGTACTTTCAGAAGACGACATGGATGCAATAGGAGATGAAATAATTTTTC
Long Flanking Sequence:
TCTCATCCTTGATGTCTCAGGAAGCATGGCAACAGTATGAACACATAAAAAAAAATAATATATATATAAAAAATAAATAATAAATAATATATATATATTGCATTTTGCTAACCTACACACTGAATATCAATGCTCTGAGATGAAATGAAGAAAAAAGAAACACAAATTGTTTTTAACCCTTCTTTAGGAATCTAGAATTCTTCGCATGAGGCAGGCGGCCACACATTTACTGCGGAACTATGTTGAGGAACAGGCCAGTGTTGGAATTGTAAAATTCAGTACTGCAGCTTCTATTGTGAGCTCATTGACTATTATTGAGAGTGATGCCACAAGAGATCATCTCATTAACTTGTTGCCCGAAACTCCAGGTGGATCCACAAACATGTGTAATGGCCTTCGTCTAGGCTTACAGGTACCAAATGAATTGATGATTTTATGTTTGTAGTGCAGGAATTACAGTGTTTTTTGTGCTAATGCTTTCTGTTTTCCTCAAAACCTTC[A/T]GGTACTTTCAGAAGACGACATGGATGCAATAGGAGATGAAATAATTTTTCTGACAGATGGTCAGGCAACAGACGACGTTACATTGTGTATTCCGGATGCAATAAACAGTGGTGCTATTATACACACAATAGCTTTAAGTGACAGTGCACATAATGCATTGCAAGAGATGGCAGACAAAACTGGTAACAAAGTTGTATAATTACAGTAAATTAATTTGTATTACATTAATAGCAGTTTATTTTTTTTAATGCAAAATTTTATATTTTATAAAAATAGGTGGAATATTTTTCTATTCCAAAGATGATTTTACCTCCAACCAATTAATGGATGCATTTGCTTCACTTACATTATCCACTGGAGATCATTCAAATGAACCTGTTCAGGTATGTACAAGTAATCTGTCATTGCTCATGATATATTTATCACTCTGTCATTGATATTCTAAGTATATGTAGTATACATTTTTTTTATATCTCATTTTCATCATTCCTTTAGCTTGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24978
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047531 Essential Splice Site 779 908 14 14
Genomic Location (Zv9):
Chromosome 15 (position 14152346)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 14183394
GRCz11 15 14119351
KASP Assay ID:
554-7289.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGTAAATGCTAGAAAGTTAGATCATGAAATAATGTATCTTGAATTATCCC[A/C]GCTAAATCTTACGAGATCAGATGGAGCTTTGACCTGGACATGCTTCGGCA
Long Flanking Sequence:
ATTTGTCAATGACAATTATGTTGTAACATGCACTGAATTGATGCACAAACTGAAACTAACTAAAAAGAAATGGAAAGAAACCTAACTAAATCAGAATCAAAAATGAGGGAACTGTTTTTTCTGTATAGGTGTTGTAGAGCTGAACCCGCCAAATCCTTCAGTTTCTGATGAACCAATTGAGGTTGGAAGCTTCACCAGAACAGCCACCGGTGAGAGTTTTGAGGTGACTCTAACAGGCTCAACACCACCAAATTTCCCTCCTAGCAAAGTGACAGATCTAGGAGCTAAAATCCTTGAGGAGGCTGTGCTTCTCAGCTGGACGGCTCCTGGTGAAGACCTCGACCAAGGAAGAGGTAAAGCATACAATTAATACAGTACAACTACAATCACTCAGTTTCAAATTATACAAATTTATATATATGACAATTTCTTTCACTTTTTCACTAACAAAGTAAATGCTAGAAAGTTAGATCATGAAATAATGTATCTTGAATTATCCC[A/C]GCTAAATCTTACGAGATCAGATGGAGCTTTGACCTGGACATGCTTCGGCAAGATTTCAGCAATGGCCATGTAGTCGACACAGCAACTGTCTCACCTCAGGAGGCTGGATCAGTGGAACAGCACGCATTCAATCTCAGTTTACCAATCCAAAATGGCACCACGCTCTTTTTTGCGGTTCAGACTTTGGATGAACACGATGCCAAATCTGATACCTCCAACATTGCTTCAGCATCAATGATCCTCCCTAATCCAAAACCACCGGGAATATCAAACCCAGGCTTGAATTTGACTGTTCTTGTCAGCTCTTTGTGTGCGGTAACTATCGTCATATGCATTATTGCTGGTGTAACCACATGGGCAGTGAGACGAAGAAGACCTGCATTAAGAATCTGATCCTAACAATGTCAAATCAATCTTTATGCTTTATGATGAATTGATCACAATGTATATGTAACAGATTTAGAATATGTTTTATCAAATACAATTTCTTAATTGCTGTA
Associated Phenotype:
Not determined