ZMP
col11a2
Ensembl ID:
ZFIN ID:
Description:
collagen alpha-2(XI) chain [Source:RefSeq peptide;Acc:NP_001073461]
Human Orthologue:
COL11A2
Human Description:
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]
Mouse Orthologue:
Col11a2
Mouse Description:
collagen, type XI, alpha 2 Gene [Source:MGI Symbol;Acc:MGI:88447]
Alleles
There are 7 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa36775 | Essential Splice Site | Available for shipment | Available now |
sa17390 | Nonsense | Available for shipment | Available now |
sa18324 | Nonsense | Available for shipment | Available now |
sa44904 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa29153 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa23437 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa36775
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000033363 | Essential Splice Site | 27 | 1695 | 2 | 65 |
ENSDART00000104799 | Essential Splice Site | 27 | 1877 | 2 | 64 |
ENSDART00000105754 | Essential Splice Site | 27 | 2021 | 1 | 65 |
ENSDART00000128331 | Essential Splice Site | 27 | 427 | 2 | 7 |
ENSDART00000133179 | Essential Splice Site | 27 | 1722 | 1 | 63 |
Genomic Location (Zv9):
Chromosome 19 (position 7847255)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 7305794 |
GRCz11 | 19 | 7224719 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CATGGAGACCTCGTTTGTGCTCCTCCTGTGCCTTTCTATGGCACAAGCAG[G/A]TGAGCATTTTGCTTTTTGGGTGTTTGACATTATTTATGCTCGCTATACCC
Long Flanking Sequence:
CTCTCTCTCCACGCACACACACACGCACACACACACACACACACACACGCTCCCCTGCATTTCGTGGGAGAAAGTAAGAAGAGGGAGAGAGAAAGAGAGAGATTGAGAGAGAGTGATTTGAAGCCTCTCTCTGCTCTCTCCGCTTTTCTGTTCTCTCAGACTCAATGGGGCTCTAGCAAAAGGGATTTCAAGCTGTAAAACTACATATTTATTACCCGAACCCTTCTTTCTATTTAAGTTTTGTACATAGCACAGATAACTTATTGAAGAACAAGGTGGGTGTGCGTTTACGACGTCTCTAAAGGCTCTCTTAAAGCCGAGTCCACTGAGTTTTTGTGAGAGAAAAGAACCAAAAGGCTAATTTCTGAAACTGTCCCGCCTTGTAGTCAAACCAAACCCGTCAAAAAACTTGGGAACTATGGATATTCGGAAGAAGCGGAGGCCGTGGTGCATGGAGACCTCGTTTGTGCTCCTCCTGTGCCTTTCTATGGCACAAGCAG[G/A]TGAGCATTTTGCTTTTTGGGTGTTTGACATTATTTATGCTCGCTATACCCCAATGAAAGTGTCAGTTTTGATGCGTTTTCGTGCAGTCCATGTAGAAGAGCAGATAAGAGTATGTGTCATTGCACTAAATAACATGTAGAAGAGTCTGTCCAAGAAGATGCTTGAGTGTTTTCCACACGTTCCTCGTCATTTTGGACGCGTTTATTAGCGGGTTAACTTTTGTTAAGCTCACAATTGTGTTATCTTCAGTATCTTAATTGTGTCTCTTCAGTCGTCATCGTTAATTTGCCTTGTCAGGGTTTTTAATTGATGAGGCGTGAATAGGCCCGTGCGCTTGAGGCCGCGTTGGCACGCATAATGTGGCATCCCCGGCGGGGGCATAGGACAAGACGGTGCTTTCACTGACAGGATTTCAGGTGTTGGTTCCAACTTTAATTCAGCATGCAGCAGTAAGGGATTGTTGTATGTTGTTATTACCTCATAAATCATATAATCGGTTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17390
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000033363 | Nonsense | 206 | 1695 | 5 | 65 |
ENSDART00000104799 | Nonsense | 206 | 1877 | 5 | 64 |
ENSDART00000105754 | Nonsense | 206 | 2021 | 4 | 65 |
ENSDART00000128331 | Nonsense | 206 | 427 | 5 | 7 |
ENSDART00000133179 | Nonsense | 207 | 1722 | 4 | 63 |
Genomic Location (Zv9):
Chromosome 19 (position 7836094)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 7294633 |
GRCz11 | 19 | 7213558 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCARGGGCATCACWGTTTTTGGAGCCCGTCTCCTGGATGAGGAGGTTTWC[C/T]AGGTCTGCTTTAGCAACRAGTGCAAWGAGTTAGAAATTGTGTGGTGCACA
Long Flanking Sequence:
TTAAATAGTTAATGCACAATATTGTCTTCACCCAACGAATCATACATCAATGGAAAACTTATTTATTTAGATTTTAGTGATGTATAAATAAATAAAAACTAATGCCAAACTATACTTAAACCTATGTTTTACAGTCCAGGGTCACATATATTAATATTGTTTGAATTACGGAGCCATGATATTGTTAGTTTTCAAGCAATGTGAAGTGTAACCGCTGGTGAACAGTAAACTTCACTTTCTGCATTATGAAAGGTTCCTTACAGTCTTTTAGCAAACCCACAAACTATGTAAAGGAACTTGATTCTCATTGAAACATTCAATACCTCTTCGTGTCCTATAGGTGGCACCGCATTGCCATTTCTGTGCAGAAGAAGAACATCACTCTGATCCTGGACTGCAAGAATCGCATCACCAAAACTCTGCCAAGGAGCAACAACCCAGTGTTGGACACCAAGGGCATCACTGTTTTTGGAGCCCGTCTCCTGGATGAGGAGGTTTTC[C/T]AGGTCTGCTTTAGCAACGAGTGCAATGAGTTAGAAATTGTGTGGTGCACATTTTGTGTTTGATTGATCACAATTAAAGTGATGATAAATGTATTTAATTTTCGTGTGCAGAAAATAACTACAATTTATAGTGATTCCATTAATAGTTTTCACATATTGTCTCACCATTAGGGAAACGCCCCACTGGTGGGCAAAACCTCACTATTCCCAATGACCGCCAAGTCACGGGCTGAATAATTGAGAGGGGTCTGGCTGCAGACTCGGTGCAGATGCAATCTCAGCTGCATCCAATGCTTTTTAATGTTCTCACCTAACCCCGCCTCTAACCCCACCCATCACAGTGATGTCACTAGCTCCATTGAGTGCATTGTGTGTGACATTGCATCTCTAAGCAATGCAGTCTCAGCTTGCATCATAAAGGCTGCATCCAAATACTGTTGGAATAATTTCTCTCTTTTTTGCTAAAAAGCCAGATAATTGTTGTGCAATAGATTTAAGGTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18324
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000033363 | Nonsense | 228 | 1695 | 6 | 65 |
ENSDART00000104799 | Nonsense | 228 | 1877 | 6 | 64 |
ENSDART00000105754 | Nonsense | 228 | 2021 | 5 | 65 |
ENSDART00000128331 | Nonsense | 228 | 427 | 6 | 7 |
ENSDART00000133179 | Nonsense | 229 | 1722 | 5 | 63 |
Genomic Location (Zv9):
Chromosome 19 (position 7834334)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 7292873 |
GRCz11 | 19 | 7211798 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTGYTGATCGCAWCCAACCCTCAGGCCGCATATGACTTCTGTGAGCATTA[C/A]AGCCCKGACTGCGACTCTCCTCTGCCCAAARTCCAGTCCCAGGACCCAAA
Long Flanking Sequence:
AACATCCTTAATAAGCCATAAATAATGAGTACATTCAGTATAAAGTGACCTGTAATAGCAGACAAAGCAATAGTGACCACATAATAAAACAGGTAATCAACACTTTACAGTCTTGAGCTGAATAATGACTTCTGAATTTGAGTTTGCCTCTCATTTATACTTGCATCACTGACTATGTTATATTTTCTGTTTATCACTGTGAAGTTGCTTTACAACAATCCATACAGTATAAATCATTATATAAATAAAGACAGCATAACTTTGATAAGACATACTGAGTGAATCACAAGTGAAAAGGCAATTCATTTAATAATATTTACTTTAATTTCAATTTGCACATAATAACTGCTATAGTATCTCAGGTGGCCTGATTCTGACCACAATTTTCAGGGAGAATCATTTGACATCTCTTCCTTTTCCTTTGGTTTTCTTCAGGGTGAGATCCAGCAGCTGCTGATCGCATCCAACCCTCAGGCCGCATATGACTTCTGTGAGCATTA[C/A]AGCCCTGACTGCGACTCTCCTCTGCCCAAAGTCCAGTCCCAGGACCCAAACACCTATGTGAGTACCACAACACATTTTTAAAGTGAGCCACGGCATCCTGGTGTGAGATATGTAGAGATCCACTAGTGGAAACTGTCTAATTTATCAGTGAACATTACTCAGCTCATATTATTCAAGCAATTCTTCTCTCAATATATTATAAGTCACTGATGTATGTTAAATATTTTTGATTTTGTCTAATATTTGCAGTAAAATCTCATCATTAATCACGTCTTTAAAAAGCTGTGTCTGTATTTGCTTGGATATATATGAACCAATTAAAACATTGTAAATGTTACTCACAAATGCATCTCACACCAGAATGCCAGGGATATTTACATATTACATACCTCTTAAAGTCATGCACATTTTTTATGTTTTAAAACACATTAGTATTAGATTTGATGTACAATATTTGGAGCCCAGTATATATATCATCTCCCTAAAATCCATTGTCATAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44904
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000033363 | Nonsense | 839 | 1695 | 38 | 65 |
ENSDART00000104799 | Nonsense | 1021 | 1877 | 37 | 64 |
ENSDART00000105754 | Nonsense | 1165 | 2021 | 38 | 65 |
ENSDART00000128331 | None | None | 427 | None | 7 |
ENSDART00000133179 | Nonsense | 866 | 1722 | 36 | 63 |
Genomic Location (Zv9):
Chromosome 19 (position 7813831)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 7272370 |
GRCz11 | 19 | 7191295 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCGCAGCAACATTAACCTTTTTGCATTCAAAGGGTTTCCAAGGCAAAGTT[G/T]GACCACCTGGCCCACCTGGAGTTGTTGGCCCACACGTGAGTTTTTAGCAT
Long Flanking Sequence:
TCAATAACATATTGGTCAATACCAATGATTAAATATTATTTACATATAGCCAATTTATTTGTGATGTTTTAGGGTGGATCAGGAAGTGACGGGCCTCCTGGACCACCAGGAGAGAGAGTATGTTCATTTTACAATAAGCAATCAATTAATAACTTCTAATCTTTTCTTCATCTTTAATGTATTTTTTATGGTTCTGTTTTTGTTTTAGGGGCTAACTGGACCTCAGGGTGCTAATGGATTCCCTGGGCCAAAGGGACCTCCCGTAAGGAATTATTAGTTTAGTTAGTTTAATTATTAATTTGGTCCAGTTTGTCTCTATTGCTTACTGATGTCTCAAATGTATTGTGAAGGGACCTCCAGGGAAAGATGGACTTCCTGGACACCCTGGACAGAGAGGCGAAGTCGTATGTACCCTCTAAACTACAGTATTATCTGTGAACATGATTAAATGCGCAGCAACATTAACCTTTTTGCATTCAAAGGGTTTCCAAGGCAAAGTT[G/T]GACCACCTGGCCCACCTGGAGTTGTTGGCCCACACGTGAGTTTTTAGCATTTATCATTAAAGATACAACCTATATGGATTTCTTATTTAATAAAATGTGTTGGAATATTTTCCTCTATTCCATGCGTGTTCAATTCAAACTCAGGAGAAATAGTTTATTGCTTAAAAGATTAGTAATTTATTGAATACAAATGAATAATTCGATGTTCAGAGCTCTGGGCATACACCAAAATAGTCTAACCGTTATACAATGCTAACCGGGACTAACGTCAGGTACTCTGCACCGCCCGGTACCTAGAAACCCAGTTTTATACACAAAAGGAAGAGAAGGCGGGTTGTCTCTGTCAGCTTTTCGGCCCCATCTCTAGTTCCTCTTTTCTGCACAGAAGAAGAAGACCAGTTAAATGCACATGCTTAGAGACCTACATAGGCTCCAATACTTTTCACAGGAAATCAGAGGCGAGAGACACATGTTATTTTTATTGTTTCTGCTGCATATTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa29153
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000033363 | Essential Splice Site | 1150 | 1695 | 49 | 65 |
ENSDART00000104799 | Essential Splice Site | 1332 | 1877 | 48 | 64 |
ENSDART00000105754 | Essential Splice Site | 1476 | 2021 | 49 | 65 |
ENSDART00000128331 | None | None | 427 | None | 7 |
ENSDART00000133179 | Essential Splice Site | 1177 | 1722 | 47 | 63 |
Genomic Location (Zv9):
Chromosome 19 (position 7810883)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 7269422 |
GRCz11 | 19 | 7188347 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCCTGGTGAATCTGGACCACCTGGTGTTGGTGGAGAGCCAGGAAAATTGG[T/A]GAGAATGTTTTTATTAATTATGTATTCATTCTTTGAACTTGTGACAAACA
Long Flanking Sequence:
TGTTGGACCCTTGGTGAGTCTCAATCCTTTGCTCTGACGGTTATAAAGTGAATCACACATTGCTTGCATAATACGGTGTATGACATTGGATGTTGTATGTTGTATTGTAATGGGTATGGTGACTGTTCTGTAGGGTCCTCCTGGTCCTCCAGGGCCGCGTGGTCCTGCTGGTCCTAATGGTGCTGATGTAAGTAACGTAATTTGCATTAATATTATTTACAAAATGCATTATTTCACTTCATTATTTTGTAATCACTGGAAAAATGGATCATTCTGTGATCGTTGTTTTTCAGGGTCCCCAAGGTCCTCCAGGAGGTTTGGGTAATCCAGGTCCCATAGGAGAGAAGGCAAGTGTAGATGAGCTCGGTTTGTTTCATGCATGATGTCTATTTCTTTGATAATATTTACAGTTCTGATTGACTGATTGTTAATTTTGTGTTTCCAGGGTGAGCCTGGTGAATCTGGACCACCTGGTGTTGGTGGAGAGCCAGGAAAATTGG[T/A]GAGAATGTTTTTATTAATTATGTATTCATTCTTTGAACTTGTGACAAACAGGCTCACACAGAAAATTAATTTAGAAACTGCAGCATCATGTCTCAGCTAACTTCATTGTTTTGCTTGTCTAATGCCAGGGCCCAAGAGGAGAGCGTGGTGAGAAGGGAGAGTCCGGGCAGCCTGGCACCCCTGGTCCTCCTGGAGGAAAGGGACCCACTGGAGATGACGGACCCAAAGGAAACCCTGTATGTGTTAATAATGACATGTATTTGAAATAAAACATAGATGTGACTGTGACTCTTCAGCAGCTGATATTTGTATTTTTAAGGGTCCTGTTGGATTCCCTGGTGATCCTGGACCCCCTGGTGAAGTTGGACCACGAGTGAGTAGAGCTAATGTCATTTATGTACAATACATGACACTTGAAGGCCACATTAAATTAAATTAGACTTTTAATGTATTATTATTACATACGCTTGGTGTTTAACATGATACATCAGTGCAAGAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa23437
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000033363 | Nonsense | 1402 | 1695 | 60 | 65 |
ENSDART00000104799 | Nonsense | 1584 | 1877 | 59 | 64 |
ENSDART00000105754 | Nonsense | 1728 | 2021 | 60 | 65 |
ENSDART00000128331 | None | None | 427 | None | 7 |
ENSDART00000133179 | Nonsense | 1429 | 1722 | 58 | 63 |
Genomic Location (Zv9):
Chromosome 19 (position 7808575)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 7267114 |
GRCz11 | 19 | 7186039 |
KASP Assay ID:
2261-2910.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACTCAAATTCTCTTTATCTTATCTCTGTGGTACAGGGTGGGGCTGGTCCT[A/T]AAGGAGAAAAGGGTGTACAAGGACCACCAGGACCACCTGTGAGTTGAAAA
Long Flanking Sequence:
AATATTATATGTTTATTATTGTTAATTGTACAGCTTTGGAGAGCATAAAAGACTACCATTTTTACTGATCTCAAACTTTTGCTCAGTATTGCACATGCACAACCATGTTATCAAATGCCATATTTTGTATTAATGCCCTATTTCTGTCTTATTTATTTAATTTTAGGGTATATCTGGAGGAACTGGTCCACTTGGTCCTGCAGGTCCTGCTGGTATGCCTGTGAGTGAACACATTACCATTGTCTCAGTGTTTTTCTCAAATTACCAAATGCTCATTTTTTGAAGAACATGCACTGATTCTTCTTAACTGAAACTTGACTTAGCTGAATGGATGTATTATTTCTCACAGGGCCCGAGGGGTGTCAAAGGAGCTAAAGGTGCCAGTGTAAGTAAAAAAAGCATTGTGCATTGGTGACTTTTCTTCCTTTCATTACACTTTACACTAAAATGACTCAAATTCTCTTTATCTTATCTCTGTGGTACAGGGTGGGGCTGGTCCT[A/T]AAGGAGAAAAGGGTGTACAAGGACCACCAGGACCACCTGTGAGTTGAAAATGAACACCACAACATTATGTTATAAATTAGTATTAAACATAATAATTCATGCTTTATAGTATTTCAGTTAAAATAACAAATTATTGATTTATTTTATTATAGTGCTTCATGTAAGATGATGTTTAGTTGTTTACTCGAGGTTTGATTATTTGTTTGTTTCTGAAAGTCAGTTTTTAGTTCCGTCACTCAATGACATTGCATATGTTGTTAAAGACTAGAAGGGATGATTTAGTCAAGAAGCTATTTGTAGTCTGACTTGCTTATTTTCCATGACATAATCTCACACTATTGAAATATTTTTGAGATGAACATTAAAAACAAACACTATAATTAACACTTTGAAACAGAGTTCCTGCATCTTTTAAATGCATCTGAATTCTGCTTTTGTTTTAGGGTCCCCCTGGTGATGTCATCCAGCCGCTGCCCATTCAGATCCCCAAGAAGTCCAAG
Associated Phenotype:
Not determined