Busch Lab

ZMP

hdlbp

Ensembl ID:
ENSDARG00000009830
ZFIN ID:
ZDB-GENE-030131-2032
Description:
vigilin [Source:RefSeq peptide;Acc:NP_958882]
Human Orthologue:
HDLBP
Human Description:
high density lipoprotein binding protein [Source:HGNC Symbol;Acc:4857]
Mouse Orthologues:
4921511C20Rik, Gm382, Hdlbp
Mouse Descriptions:
RIKEN cDNA 4921511C20 gene Gene [Source:MGI Symbol;Acc:MGI:2685229]
high density lipoprotein (HDL) binding protein Gene [Source:MGI Symbol;Acc:MGI:99256]
predicted gene 382 Gene [Source:MGI Symbol;Acc:MGI:2685228]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa33870 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa7582 Missense Mutation detected in F1 DNA Not yet available
sa18003 Nonsense Available for shipment Available now
sa40694 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa14220 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa33870
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011863 Essential Splice Site 399 1272 9 28
ENSDART00000055771 Essential Splice Site 399 1285 7 27
ENSDART00000121511 Essential Splice Site 399 690 9 18
ENSDART00000134259 Essential Splice Site 399 433 9 10

The following transcripts of ENSDARG00000009830 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 6 (position 26597527)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 26898738
GRCz11 6 26889299
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTGGCAAGAAAGGACAGAATCTGGCTAAGATCACACAGCAAATGCCCAAG[G/A]CGAGTCAACTTTCCATTAATCATGTTGGAGTGCTTGGTTTCTCCATTGTC
Long Flanking Sequence:
TTAGAAAAAGAATGCAACCACTATTGCAGTGGAGGTGAAGAAATCTCAGCATAAGTACGTGATTGGGCCTAAGGGTAACACCCTGCAGGAGATCCTGGAGAGGACCGGCGTCTCGGTCGAGATCCCACCCCTCGACAGCAGCTCAGAGACAGTAATCCTGCGTGGGGAGCCAGCCCGGCTGGGCCAGGCACTCACTGAAGTGTATGCCAAGGTAAACAAGCCTGTTTTCCTCCCCCCTTCATGTTTCAATACTGGAATTCTTTCCCTCAAGCAATTTTTCTTTCAAGCACTCTTGTGCTGCTTTTTTTTTTAATTTAGGAAATGCATTGATGGCATTATTGCAGAAACTTCATCAGTTTGACTAACCTTTGACCCTTACTTTCTCTGTACAGGCCAACAGCTACACTGTGTCCTCAGTCTCTGCTCCCTCTTGGCTTCATCGTTTCATCATTGGCAAGAAAGGACAGAATCTGGCTAAGATCACACAGCAAATGCCCAAG[G/A]CGAGTCAACTTTCCATTAATCATGTTGGAGTGCTTGGTTTCTCCATTGTCTTGTATGCGTAGATGAGACTTTGGTCACAAACGTTTGTTGAAAATGAAGTGCATGTCAATGTGACCGTATAAAGGTCAGTAATTGCGTCAGGCAGTACAGGTTGTTGTGACATGTGAATAGTTTCAGCGAAAATAATGCAGTGCATGTAAAATCACCTAAAGCTACATTAAATACTTTAAAGAACGCTTAAATCATGCTTGCTTGGCCTGAAACTAAATTTAGTATGTTGAACCTGTTATTTTTTATTTAAATAATGATTCGTATGAATTACATTTACAAAGTCTTAAACATTAGGAAATTGGTTAAATTAACTTTTGTAAATATAAGAGAAAATGGTAAATATTTAGGTAATCTAATCCATTAAAATGAGGCCTTTAATCAATTTCTATGTATTTGTTCACAGGTGCACATTGAGTTCACCGAGGGAGAGGACAAGATCACGCTGGAGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa7582
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011863 Missense 694 1272 17 28
ENSDART00000055771 Missense 697 1285 15 27
ENSDART00000121511 None None 690 None 18
ENSDART00000134259 None None 433 None 10

The following transcripts of ENSDARG00000009830 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 6 (position 26592061)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 26893272
GRCz11 6 26883833
KASP Assay ID:
554-4106.1 (used for ordering genotyping assays)
KASP Sequence:
TTTCGTGCGTTCCATTATGGAGGAGTGTGGCGGTGTGCACATCCATTTCC[C/A]AACAGAGGGCTCTGGCATCGATGCAGTGACAATCAGAGGCCCAGCGGAGG
Long Flanking Sequence:
GGCATTTTTTCTTCGTAATAGGATCACATAGTCTCCTCAGAAATTTTGATTGTATTAATCAAACTGATCCATGATATTTGGTAAACGATGAAAAATTCCACTGTCACTGTATGAGAAAGCCAGTTACTCAGAACAAGCCCCACATGACAACAGCAGAGTTATTTATTTTTTATATTACACTAAGTTCACAGGTAAATCATTTCCAATGCATAAGTATTGTTTGCTAAGAGTAGTTCAAGGGGTTACTGATTGTAATGTTTTTAGATACAACTGTATGGTCAAATAGATGAGATATGAGAATTTTTTTTTAAAAACATAGCACAATCCAATTATATGATATTGATAGAAAGGAACTTATTTACTGTTTTTATCTGTGCAGGCTAATATTACAGAGGTAGAGGTGTCCATCCCCTCAAAACTGCACAACTCTCTAATTGGATCCAAAGGGCGTTTCGTGCGTTCCATTATGGAGGAGTGTGGCGGTGTGCACATCCATTTCC[C/A]AACAGAGGGCTCTGGCATCGATGCAGTGACAATCAGAGGCCCAGCGGAGGAGGTGGAGAAAGCCAAGAAACAGCTGCTGTCCCTGGCAGAAGAGAAGGTATGTTTGAAGAGATGGGTTTCCTGTAGAACTTGAAGCTTAATGCCGGTAAGGCTGATGTTATGCTTGGAATGTTGTCTGGGCTCAGTGTTTAATACAAGTATTCAAACTGCTTTTAAAACAAGTTCACTAAAAGTTAGTACACTAAAAAGTTTAATCTGTTTTTGAACTGTACGTTGACTTTTTGTATTTCGTTGGTACTAGCAAACGAAAAGCCACACTGTTGAGCTTCGTGCCAAACCTGAATACCATAAGTTCCTTATTGGAAAAGGAGGTGGAAATATCCGGAAGGTGCGGGACAGCACAGGTGCTAGGATCATCTTTCCCACTGCTGAAGATAAGGATCATGAGCTGATCACAGTCATCGGTACAGAGGAAGCTGTCGCAGAAGCACAAAAGGAGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18003
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011863 Nonsense 790 1272 18 28
ENSDART00000055771 Nonsense 793 1285 16 27
ENSDART00000121511 None None 690 None 18
ENSDART00000134259 None None 433 None 10

The following transcripts of ENSDARG00000009830 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 6 (position 26591570)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 26892781
GRCz11 6 26883342
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCATGAGCTGATCACAGTCATCGGTACAGAGGAAGCTGTCGCAGAAGCA[C/T]AAAAGGAGCTGGAGGCACTTATTAAGAGCTTGGTTAGTGGTTTTGWTGAA
Long Flanking Sequence:
TCCATTTCCCAACAGAGGGCTCTGGCATCGATGCAGTGACAATCAGAGGCCCAGCGGAGGAGGTGGAGAAAGCCAAGAAACAGCTGCTGTCCCTGGCAGAAGAGAAGGTATGTTTGAAGAGATGGGTTTCCTGTAGAACTTGAAGCTTAATGCCGGTAAGGCTGATGTTATGCTTGGAATGTTGTCTGGGCTCAGTGTTTAATACAAGTATTCAAACTGCTTTTAAAACAAGTTCACTAAAAGTTAGTACACTAAAAAGTTTAATCTGTTTTTGAACTGTACGTTGACTTTTTGTATTTCGTTGGTACTAGCAAACGAAAAGCCACACTGTTGAGCTTCGTGCCAAACCTGAATACCATAAGTTCCTTATTGGAAAAGGAGGTGGAAATATCCGGAAGGTGCGGGACAGCACAGGTGCTAGGATCATCTTTCCCACTGCTGAAGATAAGGATCATGAGCTGATCACAGTCATCGGTACAGAGGAAGCTGTCGCAGAAGCA[C/T]AAAAGGAGCTGGAGGCACTTATTAAGAGCTTGGTTAGTGGTTTTGATGAAGGAATATCTGAATATCTTCTAAATGGGATATGTTTGGTCTAATTATTCTTAAATGCTATTTCTATCATCAGGATAACATTGTAGAGGATTTCATGATTGTGGATCCCAAGCATCATCGGTTTTTCGTGGCACGTCGTGGGCAAGTCCTGAGGGACATTGCTGATGAGTACGGTGGTGTTATTGTCAGTTTTCCTCGAACTGCTGCACAGAGCGACAAGGTAACCCTAAAGGGAGCCAAAGACTGTGTGGAGGCTGCAAAGAAACGCATGCTGGAGATGATCGAGGATTTGGTAAATACATGTGTAACAATATGCAGTTATAACTCTGAAAACTGCACATTTTGTGCTGATGTAAGAAGCGTGTGTTGACTATTTTTCTCAATCTGCAGGATGCTCAAGTGACCATGGAGTGTGTGATCCCTCAGAAGTTCCACCGCTCCATAATGGGACC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa40694
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011863 Essential Splice Site 800 1272 18 28
ENSDART00000055771 Essential Splice Site 803 1285 16 27
ENSDART00000121511 None None 690 None 18
ENSDART00000134259 None None 433 None 10

The following transcripts of ENSDARG00000009830 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 6 (position 26591536)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 26892747
GRCz11 6 26883308
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGCTGTCGCAGAAGCACAAAAGGAGCTGGAGGCACTTATTAAGAGCTTGG[T/C]TAGTGGTTTTGATGAAGGAATATCTGAATATCTTCTAAATGGGATATGTT
Long Flanking Sequence:
AGTGACAATCAGAGGCCCAGCGGAGGAGGTGGAGAAAGCCAAGAAACAGCTGCTGTCCCTGGCAGAAGAGAAGGTATGTTTGAAGAGATGGGTTTCCTGTAGAACTTGAAGCTTAATGCCGGTAAGGCTGATGTTATGCTTGGAATGTTGTCTGGGCTCAGTGTTTAATACAAGTATTCAAACTGCTTTTAAAACAAGTTCACTAAAAGTTAGTACACTAAAAAGTTTAATCTGTTTTTGAACTGTACGTTGACTTTTTGTATTTCGTTGGTACTAGCAAACGAAAAGCCACACTGTTGAGCTTCGTGCCAAACCTGAATACCATAAGTTCCTTATTGGAAAAGGAGGTGGAAATATCCGGAAGGTGCGGGACAGCACAGGTGCTAGGATCATCTTTCCCACTGCTGAAGATAAGGATCATGAGCTGATCACAGTCATCGGTACAGAGGAAGCTGTCGCAGAAGCACAAAAGGAGCTGGAGGCACTTATTAAGAGCTTGG[T/C]TAGTGGTTTTGATGAAGGAATATCTGAATATCTTCTAAATGGGATATGTTTGGTCTAATTATTCTTAAATGCTATTTCTATCATCAGGATAACATTGTAGAGGATTTCATGATTGTGGATCCCAAGCATCATCGGTTTTTCGTGGCACGTCGTGGGCAAGTCCTGAGGGACATTGCTGATGAGTACGGTGGTGTTATTGTCAGTTTTCCTCGAACTGCTGCACAGAGCGACAAGGTAACCCTAAAGGGAGCCAAAGACTGTGTGGAGGCTGCAAAGAAACGCATGCTGGAGATGATCGAGGATTTGGTAAATACATGTGTAACAATATGCAGTTATAACTCTGAAAACTGCACATTTTGTGCTGATGTAAGAAGCGTGTGTTGACTATTTTTCTCAATCTGCAGGATGCTCAAGTGACCATGGAGTGTGTGATCCCTCAGAAGTTCCACCGCTCCATAATGGGACCCAAGGGCTCTCGCATACAACAAATCACGAAAGAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14220
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011863 Essential Splice Site 1241 1272 27 28
ENSDART00000055771 Essential Splice Site 1254 1285 26 27
ENSDART00000121511 None None 690 None 18
ENSDART00000134259 None None 433 None 10

The following transcripts of ENSDARG00000009830 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 6 (position 26585345)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 26886556
GRCz11 6 26877117
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAAGGGCTTTGTTGTGCGGGAGGCTCCTTGGRCTACTGGCAACGAAAAGG[T/A]AAACTAATGTTTTGAGTGTSAAYTATTTATTGTGAAATTAAAAAGCAGGT
Long Flanking Sequence:
CCATAATACAAGAGTTATTCAAACTTTAAACTGTATTTATGAAGTGAGTTTGGAGTAAACGTGTTATGTTGTATTTTTCTATATAGATAATGTAATGTTAGCAGCCATAGCTGTGGTTTGAGAAGCTACACAAAAAGCTGACATTATCTTTTATTTCATTATTGCACAATTTGTCTTTGATTTTTTTGAATGTAACATTTTATAGTTTGGTAACTATAGCTCCACGTAGTAAAGGCTGCTACATTTAAAAGCATGTGCTGAGAAGATACTATAGTTACTGGCTGAACTGACAAAAAAAATTCAAACCGGTCTTATTTCCCAGCCCTAGAAAATGCTAAACGAATGTCTATCTTTATAGATGGCAGACGTCGTTGAAAATGAAGCCAAAATGGCCTATATGAAGCCTTCTGGTTCCAGTGCCTCAAGCATGGAAGAACCCCGTGGTCCATCCAAGGGCTTTGTTGTGCGGGAGGCTCCTTGGGCTACTGGCAACGAAAAGG[T/A]AAACTAATGTTTTGAGTGTCAATTATTTATTGTGAAATTAAAAAGCAGGTTAGTGACTTTTAAATGGGTTTCCCATGGGTCATGGGGTTTCTGGGATATCAATGAGTTTTAAATGATCTATACCAGACATTGATGGTCAATGGTTATTTTTTTTGTCCAACTCATGGAAAAACAGGGACTTTTGTTTGTCATCTTTAAATTTTATGTTATCAAAATGTGTTTTTCCTCTACCAAACATGTTTCATTCTTGTTTTCATGGTTAGACTGTGTTTCAGCTCCATTTGATTGCTTTTAAACTCATCAGCTGGCACTCACTTAGGTCAAATGCAGATAATGAATATTATCTGATGTAAATTTATCTTAGTAAATTTTTACATTAACAAATGAATAATATATTAATAGACAAACAACCAAATGATAAGTTTGTAAAACTATGGAGCAATCAGATATGGGAGAGGGAGTACAAACAAGAACAATTCTTACATGTTATTTTAAAAATC
Associated Phenotype:
Not determined