Busch Lab

ZMP

tsr1

Ensembl ID:
ENSDARG00000007744
ZFIN ID:
ZDB-GENE-030131-3762
Description:
pre-rRNA-processing protein TSR1 homolog [Source:RefSeq peptide;Acc:NP_001032447]
Human Orthologue:
TSR1
Human Description:
TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25542]
Mouse Orthologue:
Tsr1
Mouse Description:
TSR1, 20S rRNA accumulation, homolog (yeast) Gene [Source:MGI Symbol;Acc:MGI:2144566]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa39049 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa7406 Missense Mutation detected in F1 DNA Not yet available
sa42557 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa39049
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000052645 Essential Splice Site 41 836 None 15
ENSDART00000135409 Essential Splice Site 41 476 None 10

The following transcripts of ENSDARG00000007744 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 15 (position 24970282)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 25700210
GRCz11 15 25635475
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGCATGGAAAACATCGAACTAAAGGCGAGATCGGCCGGGAGAACAAGGG[T/C]ATGTTTAATGGGATTATTCATAAGTAATGTTACACGCGCTCGCACCGCCA
Long Flanking Sequence:
GACATCATGTGGTACAGGTAAATTGTGTAAGCTAAAATTATCAGTAGTGTATGCATGTGCATGAGGGTGTGTGAGTGTTTCCCAGTGGGGTGCAGCTGGAAGGACATCCGCTGTGTAAAACATGTGCTGAATAAGTTGCCGGTTCATTCCGTTGTGGCGACCCCAGATTAATAAAGGGAGTAAGCCAAAAAAAATGAATGAATGAATGAATGAATATAAACTGACCAGGGGACAGTATTATGTCTGTAATTATGGGAGGTCAATGCAGCTGAATAACCGTAGGCGGCGCCATTTATTCATCAGAGAAGAGTCTGCAGAAGGAAACTCACGCGCGCGAATATGACGTCATTAAAGTTTACATGTGCGGCATGACAGAAAATGGCTGCAGGAGGAGAGCAACAGCAGCAGACACACAGACCTGGAGTTTATAAACAGAAAAACAAGCAGCACAAGCATGGAAAACATCGAACTAAAGGCGAGATCGGCCGGGAGAACAAGGG[T/C]ATGTTTAATGGGATTATTCATAAGTAATGTTACACGCGCTCGCACCGCCATGTGTGCAGCGACTCTCTGACTGAACACGTGTTTAAAGACCCGTGCAGTGAAATAAGACTTATGAAAGACTGTTAATATAATTATGTATTTGAGTCAGAAACGAATTGAGTTTATAAAAGTGTGTAACCACTTTCCGTTTGGACATACTTTTGAAATTGTGTAGTTTTTATGTGTAGTAATTATGTATTTTTTCTAATCTTAATTTTCACCAACAATTAAGGTTAAGTTGGCTTTATATGGCACATTGATTCATTTGTGAACAATGACAGCTTGTGGCACAGTCCCTATATTGTTAACCAAGTTAACTTGCTTTGAATACTCAGTTTGAAATCGCGTACAAGTGTGACTTCGACACAAACAATGTTGTAAACAATGTTGTACTTTGATAGTCATTGGCTGTTAATAGTTATAAGATAATAAGCAATTTGATAACAATGCTTCTCTAAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa7406
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000052645 Missense 244 836 5 15
ENSDART00000135409 Missense 244 476 5 10

The following transcripts of ENSDARG00000007744 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 15 (position 24975724)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 25705652
GRCz11 15 25640917
KASP Assay ID:
554-4127.1 (used for ordering genotyping assays)
KASP Sequence:
AGAAGCACGTCTCTTCCCTGTGGAYKGTGATCAGGATGCYGTTTTGCTTC[T/A]ACGGCACTTGTCAGCGCAAAAACAGAGGCGTCTGGGGTTCCGCTCTCGCC
Long Flanking Sequence:
AAATGCTATGCATATTTAACATGAGCCTTAGTCGATGGATATTTTAAGAGTGGCTTATAGTATTGCAAAAAAGACAATGAAAGTATGATTTTCATTTCTTTTCATTTTAGATGACTTGCATTCACTCCTGGATGTGGCAAAGATTGCAGACAGTTTGGTGTTTGTGCTGGATTCAAATGAAGGTTGGGATAGCTATGGAGAATACTGCCTGTCCTGTCTCTTTGCCCAGGGATTACCAAGTCATGGTGAGATTTAGAAACAGTTTGTTATATCCTTAAACAGTCATTATCTACAAATGTACATTTAGAAAGACACGACTGACCAATCATAATCAATTCATCTTCCTCTTCACCCTGCAGCACTGGTATGTCAGGGAGTGGCTGATCTAGCAGTGAAGAAGCGCACTGAGTCCCGACGAGCTCTCTCTCGTTTGGTAGAGTCTCGTTTCCCAGAAGCACGTCTCTTCCCTGTGGACTGTGATCAGGATGCCGTTTTGCTTC[T/A]ACGGCACTTGTCAGCGCAAAAACAGAGGCGTCTGGGGTTCCGCTCTCGCCGCTCACACCTGCTGGCGCAGAGAGCCACATATGTCCCCAATAACAGCCAGAGCGGGACAGGGTTGGGGACTCTCTGTGTGTCAGGATATATTCGAGGCTGTCCTCTGCAAGTCAACCGGCTGGTGCACATCACAGGTCATGGAGACTTTCAGCTCAGCCAGATCGATGCTCCAGCAGACCCTCTGCCAATAGTTCTGTCAACATCTCGACCAGCAAAACCAGGACGAGATGTGGAGATGATGGTGAGCGGACTACTTTAACCTTTGAAGACTGCATTTTGTTTATTATACACATTTTGTGGAGGTTTACCTTCATGTGTTTTTTCGCCAGTGAAGGATTGTGCATGTTTGCATTTGATTATTGAAAGATTATGTCTTGAGCATCTGATATCTCCTCTGTGATTATGTCCTTTAAATATATAAAGGCTGGTTCTTTTACCGTCGATGAGGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42557
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000052645 Nonsense 367 836 6 15
ENSDART00000135409 Nonsense 367 476 6 10

The following transcripts of ENSDARG00000007744 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 15 (position 24978098)
Other Location(s):
Assembly Chromosome Position
GRCz10 15 25708026
GRCz11 15 25643291
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGGATGTTCGGGTGTTGATGAAAGCAGACCCTGCTCAGAGAGAGAGCCTA[C/T]AGGCAGAGGCAGAAGTCGACCCCATGGAGGGAGAGCAGACGTGGCCCACA
Long Flanking Sequence:
TGCCAGAATGTTTCTAGTATCTGTAGTAAGAGCTTGATTAGCTGCTTCAGGTGTGTTTAATTAGGGTTGGAGGTAAACTCTCCAGGAAACCGGCCCTCAAGGACTGAGATTGGACACCCCTGCCTTAAGGCATCGTAAGGCCAGAAGTTTGCTGAGGCCCCCTAGTGGACTCCAGTCCCCTGGTTGAGAACCACTGAATAATAACAACTGTTAGAAAAACTCAGTTTAACTGAATTAAAAGTAATTTGTATTAGTTGGCTGTGATTATATCCTTTCATGTGGGATTTTTGCTTTCTATTTGGGCAGATTATTTGAGGATAGTGGAATTGTTCCTGTGTCACAATTGATTGTTTTAGCAGTAATTTTTTATGGCATTAATTAGTCTATTTATTAAGATTAAGTTTTTCCTATTATGTGTCCTGAAGGACGGTGGAGATGGAGAGGTGAATGGGGATGTTCGGGTGTTGATGAAAGCAGACCCTGCTCAGAGAGAGAGCCTA[C/T]AGGCAGAGGCAGAAGTCGACCCCATGGAGGGAGAGCAGACGTGGCCCACAGAAGCAGAGCTGGAGGAGGCTGAAGGTGCGTATTAACGGGACATAATATTTTAAACATGCTTCTGTTAATTAATTTAAAACTCAAATTCATGATTATTTTGATCATACTTGTAATCACGATTATTCAAAGCAATTATCAGCTAAAGTCAAAGTTATTCACTCTACTGTAATTATTTTTTATATTTAAATATTTCCTAAATGATGTTTAACAGAGGAATTTTTCACAGTATTTCCTATAATATTTGTTCTTTTTAAGAAAGGCTTATTGTTTTATTTCGGCTAGAATGAAAGCAGGTTAGAATATTTTAAAACCAATTTTAATATTATTAGCCTCCTTAAGCAATATATATTTTTGATTGTCAGCAGAAGAAACTATTGTTATATAATGACTTTCCTAATTACACTAATTAAGCCTTTGAATGTCACTTTAAGCTGAATACTAGTATCTTG
Associated Phenotype:
Not determined