Busch Lab

ZMP

pspc1

Ensembl ID:
ENSDARG00000006621
ZFIN ID:
ZDB-GENE-030131-9530
Description:
Paraspeckle component 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPY8]
Human Orthologue:
PSPC1
Human Description:
paraspeckle component 1 [Source:HGNC Symbol;Acc:20320]
Mouse Orthologue:
Pspc1
Mouse Description:
paraspeckle protein 1 Gene [Source:MGI Symbol;Acc:MGI:1913895]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa19509 Nonsense Available for shipment Available now
sa39624 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa19510 Essential Splice Site Available for shipment Available now
sa45073 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa19509
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000102335 Nonsense 210 512 2 9
Genomic Location (Zv9):
Chromosome 1 (position 26794865)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 27132553
GRCz11 1 27826267
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTGTGGAGTTTGCTAATAAACCTGCTGCCCGGAAGGCCTTGGACCATTG[T/A]GCAGATGGGGCCCTTTTACTTACAACGTAATAACTTTTCTTTTTTAAAGG
Long Flanking Sequence:
ACTAATCTGGTCCAATTTAGCCACAAAACCTCCAACAATTAATTGGCCAGTGTTTCAGTTTAATGTCCAACCCCTGTATATGCAAATTTGTACATTTGTAAAATGCATTTTATTTACTAGTTACTTGGCATTGAGAAATCGGAATGAGTTTAGATACATAAATTTGTAAATAGTTTCCAGTGTTTAAGTAACCATATTTGAATTTGCCAACTTTTTATTATTCAGGAAACAAGAACATTAGCAGAGATTGCTAAAGCTGAGTTGGATGGAACAGTACTTGGAAACAGACCCATTCGTATTCGCTTTGCAACTCATGGGGCTGCCCTTACAGTACGAAACCTTTCTCCAGTAGTGTCCAATGAGCTTCTTGAACAGGCCTTCTCACAATTTGGCCCAGTTGAGCGGGCAATTGTGATAGTTGATGATCGAGGCCGGCCCACAGGCAAGGGGATTGTGGAGTTTGCTAATAAACCTGCTGCCCGGAAGGCCTTGGACCATTG[T/A]GCAGATGGGGCCCTTTTACTTACAACGTAATAACTTTTCTTTTTTAAAGGTTCATTCATTTATTTATGTTTGTTTGTTTTTTTGCATGAATCTGTATTTATTTTTGGTCCTCAGGTCCCCTCGTCCAGTCATTCTTGAGCCAACAGAACAATATGATGATGAAGATGGGCTACCAGAAAAGCTGTTACAAAAATCTGCACAATATCACAAGTATGTCTTGAAATCATTGACGGTCCTTGTTTTCCATTATGCTTCAATCATATCTAAAGGGTAAAAATTGTCTTTTGTACATTTTTAAACTAAAAAACATCAATGAACTAATACAGGGAAAGGGAGCATAAGCCACACTTTGCACAGCCAGGCACCTTCGAGTTTGAGTACTCTTCTCGCTGGAAAGCACTTGATGAGATGGACAAACAGCAGAGGGAACAAGTAGAACGGAACATACAAGAAGCAAAAGAGAAATTGGAGACTGAAATGGAGGCTGCCAAACAAGAACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa39624
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000102335 Essential Splice Site 219 512 2 9
Genomic Location (Zv9):
Chromosome 1 (position 26794893)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 27132581
GRCz11 1 27826295
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCGGAAGGCCTTGGACCATTGTGCAGATGGGGCCCTTTTACTTACAACG[T/C]AATAACTTTTCTTTTTTAAAGGTTCATTCATTTATTTATGTTTGTTTGTT
Long Flanking Sequence:
CCTCCAACAATTAATTGGCCAGTGTTTCAGTTTAATGTCCAACCCCTGTATATGCAAATTTGTACATTTGTAAAATGCATTTTATTTACTAGTTACTTGGCATTGAGAAATCGGAATGAGTTTAGATACATAAATTTGTAAATAGTTTCCAGTGTTTAAGTAACCATATTTGAATTTGCCAACTTTTTATTATTCAGGAAACAAGAACATTAGCAGAGATTGCTAAAGCTGAGTTGGATGGAACAGTACTTGGAAACAGACCCATTCGTATTCGCTTTGCAACTCATGGGGCTGCCCTTACAGTACGAAACCTTTCTCCAGTAGTGTCCAATGAGCTTCTTGAACAGGCCTTCTCACAATTTGGCCCAGTTGAGCGGGCAATTGTGATAGTTGATGATCGAGGCCGGCCCACAGGCAAGGGGATTGTGGAGTTTGCTAATAAACCTGCTGCCCGGAAGGCCTTGGACCATTGTGCAGATGGGGCCCTTTTACTTACAACG[T/C]AATAACTTTTCTTTTTTAAAGGTTCATTCATTTATTTATGTTTGTTTGTTTTTTTGCATGAATCTGTATTTATTTTTGGTCCTCAGGTCCCCTCGTCCAGTCATTCTTGAGCCAACAGAACAATATGATGATGAAGATGGGCTACCAGAAAAGCTGTTACAAAAATCTGCACAATATCACAAGTATGTCTTGAAATCATTGACGGTCCTTGTTTTCCATTATGCTTCAATCATATCTAAAGGGTAAAAATTGTCTTTTGTACATTTTTAAACTAAAAAACATCAATGAACTAATACAGGGAAAGGGAGCATAAGCCACACTTTGCACAGCCAGGCACCTTCGAGTTTGAGTACTCTTCTCGCTGGAAAGCACTTGATGAGATGGACAAACAGCAGAGGGAACAAGTAGAACGGAACATACAAGAAGCAAAAGAGAAATTGGAGACTGAAATGGAGGCTGCCAAACAAGAACATCAACTAATGATGATGCGACAAGGTATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa19510
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000102335 Essential Splice Site 317 512 4 9
Genomic Location (Zv9):
Chromosome 1 (position 26795390)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 27133078
GRCz11 1 27826792
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAAATGGAGGCTGCCAAACAAGAACATCAACTAATGATGATGCGACAAGG[T/C]ATAGTGCAGATTTAGAACATCAACCAGTTTATTTTGTTTATTGCAATATT
Long Flanking Sequence:
ACGTAATAACTTTTCTTTTTTAAAGGTTCATTCATTTATTTATGTTTGTTTGTTTTTTTGCATGAATCTGTATTTATTTTTGGTCCTCAGGTCCCCTCGTCCAGTCATTCTTGAGCCAACAGAACAATATGATGATGAAGATGGGCTACCAGAAAAGCTGTTACAAAAATCTGCACAATATCACAAGTATGTCTTGAAATCATTGACGGTCCTTGTTTTCCATTATGCTTCAATCATATCTAAAGGGTAAAAATTGTCTTTTGTACATTTTTAAACTAAAAAACATCAATGAACTAATACAGGGAAAGGGAGCATAAGCCACACTTTGCACAGCCAGGCACCTTCGAGTTTGAGTACTCTTCTCGCTGGAAAGCACTTGATGAGATGGACAAACAGCAGAGGGAACAAGTAGAACGGAACATACAAGAAGCAAAAGAGAAATTGGAGACTGAAATGGAGGCTGCCAAACAAGAACATCAACTAATGATGATGCGACAAGG[T/C]ATAGTGCAGATTTAGAACATCAACCAGTTTATTTTGTTTATTGCAATATTATGAAGAAAATACTTGAGTATTTCAAAATAATGTTAATTGCTTTTAAAGGCAATTAGGATTTTTCTATTATATTATTACTGATTAAGACAAAAGAGATGAGTATGCAGTGACGGTGATATTACATAGTAACTGTGCGGTCACATGTAGCTCTTTAGAGAATGTAGTGCTTATGTTCTTAAATTAGTCAATTGTAATATTTGTTGACTTAAATCAATAGATCTCATGAGACGTCAAGAGGAACTACGGCGCTTAGAGGAGCTCAGGAATCAGGAGCTACAAAAACGCAAGCAGATTGAGTTGAGGTATGCTTTTTTACCTTTTTCAGCAGAGCCCTTTACTGCAGAAGGCATGGACAGAAAGTTAGGATTACTTTTATTAAAATTGTATTTATTTAAAAAGCATGTAAAGGCTAAAATGAGCACCTAACTCGTTGATTTTGGAGAAAATCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45073
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000102335 Nonsense 446 512 9 9
Genomic Location (Zv9):
Chromosome 1 (position 26829649)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 27166809
GRCz11 1 27860523
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTGCCACAATGTACCAATTTATGTTTACACTTGATTACAGCCTAATGAG[C/T]GATTTTCTGAAGGAGGACCCCTTCAAATGGGTTCTCCTGTTGGTGGGCAG
Long Flanking Sequence:
TAATGCCTAATATATGACAATAGGACATGCAATGCTAACGAAACATTTCTAGAAAGGAAAAAAAAGCAAAAGCAGCAGATTACAAAATTAAAGCAAGAGTTTCATTTTCCAAGCTGTATTCTTTAATAGATTTTTCAGTGTGCATTTTATATTGCAGTTGTTTTGTTTTTAATTAAGGTATATTCCTCTGGGATTTTGATTAGATTTTTTGATGTTATTGTTCTTGTGTAGATAATACAGGATTTGCTTTTCTTTATATACATGTGCTAATTATGTTTTTTTTTCTTCTTTTTCTTCTTCTGGGTGTTCCTGATCTTCACTTCTTGTCTTACTTATGTGTTAAACCTTCTGGGGAAAAAACAAAACATATTTGTTAATATTTCGGACTTATTGTTTTACAACAACTTAACTACTTCATGGTCGATTTAAAATTACAACATATTCCAAATGCTTGCCACAATGTACCAATTTATGTTTACACTTGATTACAGCCTAATGAG[C/T]GATTTTCTGAAGGAGGACCCCTTCAAATGGGTTCTCCTGTTGGTGGGCAGACTGGTGTTGACTCCCCTCAGCCACAGCAACACTCACCCATGCTGGTTGGGGCAGGTTCTGTTCCTGGTGTGCTTGGCCAAAGTGGCTTTGGGAGAGGAAGTCCAGTTGGGGGCAGCTTTGATGGGCCTAACAACAAACGACGTAGATATTAAAAAAATAAATAAATCTTTAGTAATTGTGCTCAGATTGGATTATTCTGACTCATGATTACTTATATATAATCATATATTACCTTTCAGTCATTTTGACAAGTACATTTATGTATAATATAGACATAAATTGAATGAGCCAGACCTTGTGTAAATGTGAAGCACTGTTACAAATGATTAAAAGCCATTGAATTAGCTTGTACTTTGCAAAATATTGTAGCTAATTGTAGATTGCTTACTATTACTGTATTCATGTCTTTTATTTAAATATCTGAAACTAAGCAATGTTTTCCTGTGAAT
Associated Phenotype:
Not determined