Busch Lab

ZMP

supt6h

Ensembl ID:
ENSDARG00000006524
ZFIN ID:
ZDB-GENE-030131-7949
Description:
Transcription elongation factor SPT6 [Source:UniProtKB/Swiss-Prot;Acc:Q8UVK2]
Human Orthologue:
SUPT6H
Human Description:
suppressor of Ty 6 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11470]
Mouse Orthologue:
Supt6h
Mouse Description:
suppressor of Ty 6 homolog (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:107726]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa23947 Essential Splice Site Available for shipment Available now
sa16076 Nonsense Available for shipment Available now
sa16191 Nonsense Available for shipment Available now
sa37322 Nonsense Available for shipment Available now
sa37323 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa23947
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028007 Essential Splice Site 488 1726 13 37
Genomic Location (Zv9):
Chromosome 21 (position 25429039)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 25998857
GRCz11 21 26035552
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAATGTTTATTAATGCATTACACCAAAACCTTTTGTGTGTTTTTATTTCC[A/T]GGGGAAGAAGCAGAAGTGGAGGAGGAAGAGGAAGAAGAGGAGCAAAAGGG
Long Flanking Sequence:
TTTGTGGTTTTCATTTAAAAATTGACAAATTATTTATGCTGTCCTATTCAGTGGACCCAGCTGAAGACCAGAAAGCAGAACTTGACACGTCTTTTCCAGAGAATGCAGTCTTATCAGTTTGAGCAGATCTCGGCTGACCCTGACAAGCCTTTAGCTGACTCTACTCGTCCCCTAGACACTGCTGACATGGAGAGGTATAACTGTTTAAACATGTGCTCCTAAATTTGACTCTTTGTCCACAGTGCTCACTTCTTTATTGCTTTGACAGACTGAAAGACGTTCAGTCTATTGATGAGCTGGGTGATGTCTACAATCACTTCCTGCTCTACTATGGCAGAGACATTCCTAAGATGCAGAATGCAGCAAAGGGTGGCAAAAAGAAACTAAAGAAGATCAAGGAAGTTTCAGAGGAAGATGGTATAGCAGAATTTTACTAGGACGAGTGAATTCTAATGTTTATTAATGCATTACACCAAAACCTTTTGTGTGTTTTTATTTCC[A/T]GGGGAAGAAGCAGAAGTGGAGGAGGAAGAGGAAGAAGAGGAGCAAAAGGGTCCAGATCTGAAACAAGCCTCACGCAGAGATATGTACAGCATCTGCCAGAGTGCAGGCCTTGGTGTGTATATCTTGCACATTTAAATAAGACTCGGTTATAATAAAAGAAGAAAAAAATGGAACCTATTATATAAATATAATGTCACATGATATAATAAAAAAATGAAAAGGTAATTTTATTACATTAATAATTTTTTCTTTTATAAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATATATATAAATTTATAAATATTATAGTGTCATTTTTAAAAGTTATGAATTCATGCACACACTTTTACTAATTGTTAATGGCTTATGGTAACCTTTATTTTATTTTTTAAGATGGTCTTGCCAAGAAGTTTGGTCTGACCCCAGAACAGTTTGGTGAAAACTTGCGAGACAGTTATCAGAGGCATGAAACCGAGCAGTTTCCTGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16076
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028007 Nonsense 600 1726 15 37
ENSDART00000028007 Nonsense 600 1726 15 37
Genomic Location (Zv9):
Chromosome 21 (position 25429748)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 25999566
GRCz11 21 26036261
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGTGGCCATGCAGATTGCCCGCGAGCCTCTGGTCAGACACGTGCTCAGA[C/T]AAACCTTCCAGGAGAGGGCCAAGATTAACATCAAGCCAACTAAGAAGGGC
Long Flanking Sequence:
AAAAAATGAAAAGGTAATTTTATTACATTAATAATTTTTTCTTTTATAAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATATATATAAATTTATAAATATTATAGTGTCATTTTTAAAAGTTATGAATTCATGCACACACTTTTACTAATTGTTAATGGCTTATGGTAACCTTTATTTTATTTTTTAAGATGGTCTTGCCAAGAAGTTTGGTCTGACCCCAGAACAGTTTGGTGAAAACTTGCGAGACAGTTATCAGAGGCATGAAACCGAGCAGTTTCCTGCAGAGCCTTTGGAGCTGGCCAAGGACTATGTTTGCAGGTAATGGATCAGTTGGAATTCTCTTTTTTTTTTTTTTTTGCCCTGTAGTCTTTTTATAAATCAATGTTTTTTTTCTAGCCAATTTAACACCCCAGAGGCTGTCCTGGAAGGCGCTCGCTACATGGTGGCCATGCAGATTGCCCGCGAGCCTCTGGTCAGACACGTGCTCAGA[C/T]AAACCTTCCAGGAGAGGGCCAAGATTAACATCAAGCCAACTAAGAAGGGCAAGAAGGTTGGTTCTTGGATTTGTTTAGGATTAACAGACCAAATTCTAAATGTTTGAAGTAGGGGTGTGCAAAATATGTTGGCTATAGTATTATGTTTTATTGATATGCAATCATCATTTGTGTAATAAAGCCTATTAGAATGACAATATGATTTATAATAATGATATTGTCAATCTAACAGGCTTTGTCATACAAATGATAATATTGCTTAAATATCAATTATCTACTAATATGTTACTGAATGTTAATTAAAGGGTATCTGTGGGGTCTTAAAATGTCTTAAATCTAAATTTTCATGTCGGCTTAATCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACCACCAACTTATTCAGCATGTTTTTTGGCAGCGGATGCCCTTTCAGCCATTTATTTTCAGGGAAATAAATCTAAATTTTAGGTCTTATACAGTTTTAAATCTATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16191
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028007 Nonsense 600 1726 15 37
ENSDART00000028007 Nonsense 600 1726 15 37
Genomic Location (Zv9):
Chromosome 21 (position 25429748)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 25999566
GRCz11 21 26036261
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGTGGCCATGCAGATTGCCCGCGAGCCTCTGGTCAGACACGTGCTCAGA[C/T]AAACCTTCCAGGAGAGGGCCAAGATTAACATCAAGCCAACTAAGAAGGGC
Long Flanking Sequence:
AAAAAATGAAAAGGTAATTTTATTACATTAATAATTTTTTCTTTTATAAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATATATATAAATTTATAAATATTATAGTGTCATTTTTAAAAGTTATGAATTCATGCACACACTTTTACTAATTGTTAATGGCTTATGGTAACCTTTATTTTATTTTTTAAGATGGTCTTGCCAAGAAGTTTGGTCTGACCCCAGAACAGTTTGGTGAAAACTTGCGAGACAGTTATCAGAGGCATGAAACCGAGCAGTTTCCTGCAGAGCCTTTGGAGCTGGCCAAGGACTATGTTTGCAGGTAATGGATCAGTTGGAATTCTCTTTTTTTTTTTTTTTTGCCCTGTAGTCTTTTTATAAATCAATGTTTTTTTTCTAGCCAATTTAACACCCCAGAGGCTGTCCTGGAAGGCGCTCGCTACATGGTGGCCATGCAGATTGCCCGCGAGCCTCTGGTCAGACACGTGCTCAGA[C/T]AAACCTTCCAGGAGAGGGCCAAGATTAACATCAAGCCAACTAAGAAGGGCAAGAAGGTTGGTTCTTGGATTTGTTTAGGATTAACAGACCAAATTCTAAATGTTTGAAGTAGGGGTGTGCAAAATATGTTGGCTATAGTATTATGTTTTATTGATATGCAATCATCATTTGTGTAATAAAGCCTATTAGAATGACAATATGATTTATAATAATGATATTGTCAATCTAACAGGCTTTGTCATACAAATGATAATATTGCTTAAATATCAATTATCTACTAATATGTTACTGAATGTTAATTAAAGGGTATCTGTGGGGTCTTAAAATGTCTTAAATCTAAATTTTCATGTCGGCTTAATCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACCACCAACTTATTCAGCATGTTTTTTGGCAGCGGATGCCCTTTCAGCCATTTATTTTCAGGGAAATAAATCTAAATTTTAGGTCTTATACAGTTTTAAATCTATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37322
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028007 Nonsense 632 1726 16 37
Genomic Location (Zv9):
Chromosome 21 (position 25431538)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 26001356
GRCz11 21 26038051
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTTTTCCAGGATGTGGATGAGGCGCACTTTGCCTATTCTTTCAAGTACT[T/A]GAAGAACAAGCCTGTGAAAGAGCTCAGTGGAGATCAGTTCTTGAAGATGT
Long Flanking Sequence:
TTAAAGAATCGGCTATTTTAAACAAATCTATTAAATTAAGGGTTCAGCTAAGCTCATTTAGAAAGCCACCACCTACTGAGGATTTTGGTGGTATGTTCAAAACACTCCTAGCAAAAATACAAATGTTTTCAGTATTGCACACCTTAGAAGGCAATAAATGTATTCAACCTGTATTTTATTAACTGTTGTTTTTGTTTATCCTCTAACTTTTGCTTAACCGTATTCATCAAGGAAAGGGTATAAGCAGAATATCAACCTTTGCAGCATAATCCCAAGTCTGTTGTGTTAGAGCTTTAGCTAGAATATTCAGTTGTTGCCTGTAGGTGCGAGATGTAGCCATTGTTTTTGCTGTGCAACAATATTAGCATAGTGAATTGCTATTCAAACCCAAAGTGAACTGATGTGCTCCATTGTTTGCTCTTTACTAAGTTTGTCTGCTATTGCCTGTCATGTTTTCCAGGATGTGGATGAGGCGCACTTTGCCTATTCTTTCAAGTACT[T/A]GAAGAACAAGCCTGTGAAAGAGCTCAGTGGAGATCAGTTCTTGAAGATGTGTCTGGCTGAGGAGGAAGGCCTTCTCGCCATAGACATCTGCATTGACCTTGTTGGAGTCAAAGGGTATAGTTGTATTTTTAGCTTTAGAGGAAACCTGAATTTAGTGTCAAGAAATGTTTATGGTCCGTTTCCACTGAGTGGTACAGTATGGGTCACCTTTATCAGACTTGCGTTTCCACTGCCTAAAGGGTACCAATGGTGGACGTGATGTACGACAGAAAGTCTCAGTTGACGTCATTCTCGCTAGGACTGCTCGATTATGGGGGAAAATCATAATCACGATTATTTTGGTCATAATTGTAATCACGATTATTCAAAACGATTATCAGTTGAAGTCAAAAATATTCGTCCTCCAGTGAATTTATTTTTATATATAAATATTTCCCAAATGATGTTTAACAGGGGGATTTTTTTTACAGTATTTCCTATAAATTTTTTTCTTCTGTAGA
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa6674
Status:
Less stringent filtering
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028007 Nonsense 804 1726 19 37
Genomic Location (Zv9):
Chromosome 21 (position 25436176)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 26005994
GRCz11 21 26042689
KASP Assay ID:
554-4946.1 (used for ordering genotyping assays)
KASP Sequence:
TCTCTCATTAATGGTGAAGGAGAGGTGGTGGATTTCCTTAGACTTCCTTA[T/A]TTCCTGAAGAGGAGAAATGCATGGAGAGAAGATGAACGAGAGAAAAAGGT
Long Flanking Sequence:
TAAAAAGTTTTTGTATTGTATGACAAATAACAGTTAATGCTGTAAAAATAAATATTAAATGACACATTTCCTTTGATAATTTTCATATTATAACTTGTGCCTCTCTTGATGGTTGAATGCTAAATGAATCCAATCCATGTTCAATAAAATGAATTTAATGGAGAAAATAACTAGCTAGTACTGTATGAAATTGGAAAATATCAATATCAGAATTGGCCAAAAGGGTTCACTTTGTTGTATCTGCTGAAATAAATCCCTATTGGTAACATCAAATTACATATCTTAAACTTGTAATCATTTTGATATATTCCGTTTGCTGGTTACTGGCCATAATATGATTATGGTTATCAAGTGAGAGTATTGGAGTATAAGTTTGCTTACTCTGTATGGTTTTGAATGGGATCTGATGTCGTTTGCTTGTGTTTGTGTAGAGACACACCAGTGTTCTGCTCTCTCATTAATGGTGAAGGAGAGGTGGTGGATTTCCTTAGACTTCCTTA[T/A]TTCCTGAAGAGGAGAAATGCATGGAGAGAAGATGAACGAGAGAAAAAGGTAAGAAACAGAAGCCCTCAGAATGATTAACTGCTTAGTTGTTTGTTAATTACATTTGATCATTTGTTTTTAAACTACTGCTTGTTTTGTAGCAACAAGATGTTGAAAACCTCAAAAAATTCCTCCTCAGTAAGAAGCCACATGTTGTTGCTGTTTCTGGGGAGAATCGGTGCGTTTATCATTGCTGAATTTGTGATTTTGAACCTTCATAAGAGCTTCACATGCTAATATTGTGTTTGCATGCATGCAGTGATGCGCATATGGTGATGGAGGACATCAAGCGCACCATCAGTGAGCTAGAGCAGAACTCCTCTCTGCCTGTGGTGGGAGTGGAGTTGGTGGACAATGAACTTGCTGTGCTTTATATGAACAGCAAGAAGTCTGAGGTCAGTGGAGTGAGAGAAACGCATCTTACACACAAAACCGAAGTAGGATCTTATTCTTACGTTTTC
Associated Phenotype:
This allele has been associated with this phenotype by genetic linkage analysis and may not be causal.
See FAQs for more info.
Stage Entity Quality Tag
Pharyngula:Prim-5
ZFS:0000029
whole organism
ZFA:0001094
dead
PATO:0001422
abnormal
PATO:0000460
Pharyngula:Prim-5
ZFS:0000029
whole organism
ZFA:0001094
degenerate
PATO:0000639
abnormal
PATO:0000460

Mutation Details

Allele Name:
sa37323
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028007 Nonsense 1115 1726 26 37
Genomic Location (Zv9):
Chromosome 21 (position 25443045)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 26012863
GRCz11 21 26049558
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACATTTTTCTATCTTTTTTAGGGTTATGGTAATAAGGGAATTACACTGTA[T/G]GACATCCGAGCAGAGCTCAGCTGTAGATATAAAGACCTGAGAGCTCCATA
Long Flanking Sequence:
TTCAAAACAAGATATTCTGAAGAATGGTGGAGAAAAAGCAGCTGTATACATTCATACAGTAGTAGAAACACAAAGTACTATGGATATCAGTGGCTGATTATTTGTCGAATATTTTTCAGTATATCTGTAGATACAAGTTCAGGATGATGTAAATGATGGATGAACTAAATAGTTTGGTGAACTATTCCTTTTACATGAGTTTATTGTGACTTACTTGTATTTTTTTTTATTTTTTTATTGAGACTATTTCCTTTTTTTTATTTATTTTTTTTAAGTGGAAACCTTACCGAAGACATTTATATATGTATTTAGCATCACCTACTTGTGATCTGATGGACAGAAATGCATCTTAATGCCAGCTGTAAACAGGGCCAGTGTTTCATAGTATACCCTCATTGTTTAATGTTAGCAGGCTTCAAACGTAACTGATTTGAACACGTACTTAACTAGACATTTTTCTATCTTTTTTAGGGTTATGGTAATAAGGGAATTACACTGTA[T/G]GACATCCGAGCAGAGCTCAGCTGTAGATATAAAGACCTGAGAGCTCCATACAGACCTCCCAACACAGAGGAAGTCTTTAACATGCTCACCAAGGAGACACCTGAGACTTTCTATATTGGTAAACCACTACTTGATTGCTTTTAGAAATGATAAAAGATCGTAATGATCCATGCTCTGTGATATTTATGGTGATATTTTTGTATTTTTAATATATAATGTAAATCTTTGTGCATCTACAGGTAAACTGATCACCTGTGTAGTAACTAACATCGCACACAGACGACCACAAGGTGAGAGTTATGACCAGGCCATCCGTAATGATGAGACTGGACTCTGGCAGTGTCCTTTTTGCCAGCAGGACAACTTCCCTGAGCTCAGTGAGGTGGGAAGCTTTTCTGATATCTTTTTAAAGGAATGAGACTGTTCATTTTAGCTTTTGCACATCAGTGAATGCTGTTACCATGGTGTTGTGTATTTCTCAGGTGTGGAATCACTTTGAC
Associated Phenotype:
Not determined