ZMP

cops2

Ensembl ID:

ENSDARG00000004785

ZFIN ID:

ZDB-GENE-040625-15

Description:

COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6IQT4]

Human Orthologue:

COPS2

Human Description:

COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) [Source:HGNC Symbol;Acc:30747]

Mouse Orthologue:

Cops2

Mouse Description:

COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) Gene [Source:MGI Symb

Alleles

There are 4 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa12873	Essential Splice Site, Missense	Available for shipment	Available now
sa38113	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa16281	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa12873

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

T > C

Consequence:

Essential Splice Site, Missense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000006124	Essential Splice Site	124	443	None	13
ENSDART00000133872	Missense	125	282	4	8

Genomic Location (Zv9):

Chromosome 25 (position 33356491)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	25	31966893
GRCz11	25	32377850

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TGAGAAATCCATYAACTCCATTTTAGACTATATCTCAACCTCCAAACAGG[T/C]AATGGTATGTTTTACATTGCTGTGTGAGTTTGCATTKYATTCAGTTTCAT

Long Flanking Sequence:

ATAATGCTGCTGATATGATTTTAAAGCATAAATAACTGCATTTTAACTTAGAAAATGAATAATCACCTTCTTTTTGTTTTGCAGGTGCTGGAATTGGAGGGTGAGAAAGGAGAATGGGGATTCAAAGCACTGAAACAAATGATCAAGATCAACTTCAAACTGGTATGTAGTTATATAGTTTATTATAGTATAAAGTATTATTTGTTTGTTCGCCTAAAACATTATGAATATGAAATAAAATTGGGTAATGTCATAAAAAGATTCTATATCTGTTTGATAGTTTTTTTTTCATTTCTCAACCAATTATATATATAAGAATTATTGATCTGTTTGGAAATGACGTTGATTCATTTATTTTCTTCTGATTTCATAGACTAATTTTCCTGAAATGATGAACCGGTACAAACAGCTTTTGACTTATATTAGGAGCGCTGTCACCAGAAATTATTCTGAGAAATCCATCAACTCCATTTTAGACTATATCTCAACCTCCAAACAGG[T/C]AATGGTATGTTTTACATTGCTGTGTGAGTTTGCATTTCATTCAGTTTCATTACATTATCAACCCTCGTAATACATTCAAGTCCTGTAAGAAGTGCATTATAGTTTTAAACTAATAAAGAATCTAAAAGAATTATTATTATTATTATTAATATTATTATTATTAAGGAATTATTATTATAATAACAAGGTGATGCAGTGGCGCAGTAGGTATTGCTGCCGCCTCACAGCAAGAAGGTCGCTGGGTCGCTGGTTCGATCCTCGGCTCAGTAGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTCACGGGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAACCCAAAGACATGCGGTACAGGTGAATTGTGTAGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGAATGTGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAAATGTGCTGGATAAGTTGGCGGT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa38113

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000006124	Essential Splice Site	180	443	6	13
ENSDART00000133872	Essential Splice Site	182	282	6	8

Genomic Location (Zv9):

Chromosome 25 (position 33353578)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	25	31963980
GRCz11	25	32374937

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AATTTGGAAAACTTCAGAAGATTCTCAGGCAATTACATCAGTCGTGTCAG[G/A]TATAGTAAATGATCTAAATAGAAAAATAGCATTCATAAAAGGTGCTGCAA

Long Flanking Sequence:

TTCTGTTGATTCCTAATAATTATAGTAATACAAGCAAATGTTACCGCTCCATTCACACGGGGCTTCAGCGTCAACGATTGACTGAAGGCGTGTCTGAAGTTGGGGCTGAAGCAATCGTCATAGAAGCGTCAGCCAATGAAATTCAGCAATAGGCCACTGTCTAGCTGGTGTATTTGCATACAGCGATCTGATTGGCTGACGCTTCCGTTGGAGCTTGAAAAGTTGAGCTAGTCGCAACTTCTGCAGCGAGCAACCCCTCTGAAGCGGCGCCGATGGATCCCCAATGCAGTTCGGCAACGCCTGACGTCACCCATTCAAAGTGAATGAGAAGCGTTGATGCTGACGCCCCTTGTGAATGGGGCGTAAGAGTCTGTGTCAATACTCACTTTTAAGACTATTGCAAACCTCTCTGTTTCATGCAGCTGGGAAAGTTGTACCTGGAAAGAGAAGAATTTGGAAAACTTCAGAAGATTCTCAGGCAATTACATCAGTCGTGTCAG[G/A]TATAGTAAATGATCTAAATAGAAAAATAGCATTCATAAAAGGTGCTGCAAATATCTGAAAGTGGTCGATGTTGTTGGTTTAGACGGATGACGGAGAGGATGACTTGAAGAAGGGCACTCAGCTTTTGGAGATTTACGCTTTGGAGATCCAGATGTACACGGCACAGAAAAACAACAAGAAGCTCAAAGCCCTTTATGAGCAGTCATTACACATCAAATCAGCCATCCCACATCCACTCATCATGGGAGTCATCAGAGGTGTGTTGCATGTTTTTAGTCTAAATTGTTTAATTGCTTCTCAAAGGTTTATTTGTTTTTTTGTTTAATTTTCTTTTGTAATTCAGATTTGTGTCTGCGTGTCTCAGATTTGGTTTGTCTTGTTTTGTGCACGATTAACAAGTCCTCTAATTCTGCTTGGTTTTGTTTTTTGTTTTTTTGCATGATTAGAATGTGATTTAGTTTTGTTTTTGTTTATTTTTTGATTTGTTTAATTTTAGTTTT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa16281

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000006124	Nonsense	273	443	8	13
ENSDART00000133872	Nonsense	275	282	8	8

Genomic Location (Zv9):

Chromosome 25 (position 33351129)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	25	31961531
GRCz11	25	32372488

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

CAGACTTTTTTGAAGCGTTCAAAAACTAYGATGAGTCYGGAARCCCCAGA[C/T]GAACCACTTGTCTGAAGTACCTGGTCCTGGCCAACATGYTRATGAAGTCT

Long Flanking Sequence:

TGGTTTGTTTTGTGCACCCTTGCAAAGTTGTTTTTCTTTAGTTTGTTTGTTTTTGTACAGTTGTTTTGTTTTATTTTTTAGTGTGTTTTTATTTGGTTTTTGTGGGCGTGTAATTGGAAAAGTGTTTTTTGTTTTAGTTATTCTTGTGCATTTAGTTGTTTTTTGCTAAAATTGAAAGTTTGCTTTCGGGTTTTGTTTTTGCTTTTTGGCTTGGTTTGTGTACAGTTGTAATATCTTTATTTCTATCAGAAAGTTTGTTTGCTTTTTTTTTTATTTACAATTTATTGACAGTTGTTGTTTTTTTCATTGGTGCGGTTTAGTCGCAAAGTTGGCTCATTATTTTATTTTTTATACAGCTTGTCTACTAATCATCTTTAACTTGTGGCTTGTTCTCTACAGAGTGCGGCGGTAAAATGCACCTGAGAGAAGGAGAGTTCGAGAAGGCACATACAGACTTTTTTGAAGCGTTCAAAAACTACGATGAGTCCGGAAGCCCCAGA[C/T]GAACCACTTGTCTGAAGTACCTGGTCCTGGCCAACATGCTGATGAAGTCTGGAATCAACCCGTTTGATTCTCAAGAGGTACGGCTGCACAAAATATCGTTTCTGCATCGATATCGCAATGTTCACACCCATAAAGTCATATAGCAGGATGTGCAATGTTGAGTTGGGATTATATTTGGTCAGCACTGCAGTTCAGAACACATGAGATTTGTGGAGTCACTGTAGAGTTTATCCATAATATACAGGGCTTGGACAATGAAACTGAAATGTCTGGTTTTAGACCACAATAATTCATTAGTATGATGTAGGGGCTCCTTTTGCGGCCAGTACAGCATCAGTTCTTCGATTTTGAGCCATTGTTCTTGCAGAATAGTGGCCAGGTCACTATGTGATGCTAATGGAGAAAAATGTTTCCTGACTCGCTCCTCCAAAACACCCCAAAGTCACTCAATAATATATAGATCTGGTGACTGTGCAGGCCATGGGAGATGCTCAACTTCA

Associated Phenotype:

Not determined