ZMP
sema6d
Ensembl ID:
ZFIN ID:
Description:
semaphorin-6C [Source:RefSeq peptide;Acc:NP_998164]
Human Orthologue:
SEMA6C
Human Description:
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;
Mouse Orthologue:
Sema6c
Mouse Description:
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C Gene [Source:MGI Sym
Alleles
There are 2 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa11733 | Essential Splice Site | Available for shipment | Available now |
sa3000 | Nonsense | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa11733
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000091031 | Essential Splice Site | 173 | 880 | 7 | 18 |
ENSDART00000136361 | Essential Splice Site | 191 | 898 | 7 | 18 |
Genomic Location (Zv9):
Chromosome 19 (position 419730)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 409661 |
GRCz11 | 19 | 409868 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGCAAGATGTCCATTTGAGTCTCGACAGTCCAATGTWGGARTGTTTGCAG[G/A]TGAAACACACACASAGAYGGATGTGAARATATATACACCTGCAAAATAAG
Long Flanking Sequence:
AGAGTGTGCATAACAGCAAAGCACATCATCGAGGATCATGTTTATATCTGATAAAGAAAATCAGCATAAGCTCTGCTCTAACTGGATCAGGTTTGGAACAAGTGATAGGAAAAGGCTTTATTTCTGTGTGTTTTCAGGATGAATGTTACAATTATATCAAGGTTCTTGTTCCTCGTAATGACGAGACTCTGTTTGCCTGTGGAACAAACGCGCTGAATCCTGCCTGCCGCAACTACAGAGTGAGTAAACCACGCCAGCGCCCTCATGTGGAGAGAGAGAGAGTGTGTTTATTTGAGTTTAAGTGTGTGTGTTTGTGTATGAGAGTGTGAGTATGTGCTGTGTATGCGTGTGTGAGTATTTGTTTGTGTGTGTGTGTTGATATGCTGTTGTGTTGTTTTGTTTTGTTCAGTTGAGTTCACTGGAGCAGGTCGGACAGGAGCTCTTGGGTCAGGCAAGATGTCCATTTGAGTCTCGACAGTCCAATGTAGGAGTGTTTGCAG[G/A]TGAAACACACACAGAGACGGATGTGAAGATATATACACCTGCAAAATAAGACTAAATTTGTCTTCCAGGGGGATATTTTATTAACACTCTCACCAAATAACAATGTTAAAATAGATTTATTGCTTTGTTATTTTTGTTTTGAATTTAAATACAGAAAAACAACATGACTGCATTATTAAAAGTATATAATAAAGTATATTATTATTATTATTATCATTATTATTATTATTAAATAGTCATACTGAATAAGTTTCCTTTTTTGTTCTTATATGCCAGTAATTGATTGATTGATTGATTTGATTGATTGATTGATTGATTAATTATCTGATTGATTTGATTGATTGATTAATTGATAGATTATCTGATTGATTGGCAGGTAGACAGACAGTGAAGTGCTTCTTCATTTAAGTGTTTTACATTTCCCTCTCCTCTATACTTCAGGTGGTCATTTCTATTCAGCCACAGTGACGGACTTCCAGGCGAGTGACGCTGTGATCTAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa3000
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000091031 | Nonsense | 225 | 880 | 9 | 18 |
ENSDART00000136361 | Nonsense | 243 | 898 | 9 | 18 |
Genomic Location (Zv9):
Chromosome 19 (position 420848)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 410779 |
GRCz11 | 19 | 410986 |
KASP Assay ID:
554-2467.1 (used for ordering genotyping assays)
KASP Sequence:
TTGTGTTGTTTTGTTTCTGCAGAGCCTCATTTCCTGCACGCTGTCGAATA[C/A]GGGAACTATGTGTATTTCTTCTTCAGTGAGATYGCTGTGGAGCACACTGC
Long Flanking Sequence:
TCAGCCTAATTTTAAGCGCCTTTTGGATTATTGCATGAAAAAAATGCTTAACAGAATTGCCAAGATGTGCTTACATTTTAAATATGTGCATACAATAGTGTATGCATCTGTCTGCACTCCCAAAGAGTGTCTCACACCTCCAAAAGCCACCGCATTCATTGCATTTCATCTTCTGAGGCGCAACTCGTTTATTAGAGGAGAACAAACACCACAGTGGCAAATCCCAACAGTGCAGCAGACTCTGCTTCTCTCAGCAGGAGCTTCTCATTTTACTTCTCTTTTGTGTCTCACTGGAGGGAAACGCTGCTTCAGTCACTAATGCTTTATGTGCTGTTCCAGTTATTCCCTCTTTGCCTGGAAACACAGCTCGTGTCTGCTCAGATCATGTGTGCTTTTAGCAGAGAGACACACTGCTGTGAGAAATGCTCAACTGTTTATGTTGTTGGTGAATTGTGTTGTTTTGTTTCTGCAGAGCCTCATTTCCTGCACGCTGTCGAATA[C/A]GGGAACTATGTGTATTTCTTCTTCAGTGAGATTGCTGTGGAGCACACTGCTGCTGGGAAGGTAAATCAGCTCCAGCTAGAAGTAAACTCAGAGAATAAGGGAACGTTCCCACAACATTCTCCCAGTGTTCTCTAAGCGTTACAAACAAACATTCTTCTAGTAATATTAGTGAAACTATATATATATGAGAAGCGTGAACATGTTTTCCTCAGTGGTGTTTAATGCAGTGCTCCACACTGAAGCTCTCTCTCTCTCTCTCTCTCTCTGTGTTTTATTAATCAGCTATTGTCTGTTTCTGCTGCTCATGGCGCAGGTTGTGTATTCTCGTGTGGCGCGAGTGTGTAAGAATGATAACGGCGGCTCCACGCGAGTGTTGGACCGACACTGGACATCATTTCTGAAGGCTCGGCTGAACTGCTCCGTTCCTGGAGACACTTTCTTCTACTTCGATGTGCTTCAGTCTCTGACCAATGTGCTGCAGATCAACCAGAGACCCGCTG
Associated Phenotype:
Not determined