Busch Lab

ZMP

pabpc1l

Ensembl ID:
ENSDARG00000002597
ZFIN ID:
ZDB-GENE-030131-5836
Description:
polyadenylate-binding protein 1-like [Source:RefSeq peptide;Acc:NP_956133]
Human Orthologues:
PABPC1L, RBMS1, RBMS2, RBMS3
Human Descriptions:
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:13427]
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:15797]
Mouse Orthologues:
Pabpc1l, Rbms1, Rbms2, Rbms3
Mouse Descriptions:
RNA binding motif, single stranded interacting protein 1 Gene [Source:MGI Symbol;Acc:MGI:1861774]
RNA binding motif, single stranded interacting protein 2 Gene [Source:MGI Symbol;Acc:MGI:1861776]
RNA binding motif, single stranded interacting protein Gene [Source:MGI Symbol;Acc:MGI:2444477]
poly(A) binding protein, cytoplasmic 1-like Gene [Source:MGI Symbol;Acc:MGI:1922908]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa16293 Nonsense Available for shipment Available now
sa2423 Nonsense Available for shipment Available now
sa41286 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa16293
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004546 Nonsense 167 620 4 15
ENSDART00000126848 Nonsense 167 620 4 16
ENSDART00000134161 Nonsense 167 557 4 13
ENSDART00000142322 None None 147 None 3
ENSDART00000145011 Nonsense 167 557 4 13
Genomic Location (Zv9):
Chromosome 8 (position 47184177)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 45331036
GRCz11 8 45338915
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAGCTAACAGAGCAATTGAGACGATGAATGGCATGCTTCTGAATGATCGC[A/T]AAGTGTACGTTTAATTAATGCAGTATGTGGTACAGAGTTYCTTTTAAACC
Long Flanking Sequence:
TAAGTGATCAGAAGGTTTCTCTAAAATCTGCACGTCACTTTTTCCTCTATTTAAGCGGAGTGTGCCCTTGACACAATGAACTATGAAGTCATTAAAGGTCGCCCAATCAGGATCATGTGGTCACAGCGAGATCCTGGTCTGAGAAAGTCTGGTGTGGGAAACATCTTCATCAAGAACATGGATGAGTCTATTGACAACAAGGCTCTTTATGACACCTTTTCTGCTTTTGGTAACATCTTGTCATGTAAGGTACATTCTTTTCCAGTCACTGTGCGATTTATCTATTGGATAGACGGGTTGACTTGAAGGCCTTTTTGCCTCAAGTTGAAATAAAATGTAATGTTTATTGCCACCAACGCATCTCAGAGTAACCTTTTTCTTCATTCTAGGTAGTTTGTGATGAAAACGGCTCAAAGGGTTATGGGTTTGTGCACTTTGAGACCCAAGAAGCAGCTAACAGAGCAATTGAGACGATGAATGGCATGCTTCTGAATGATCGC[A/T]AAGTGTACGTTTAATTAATGCAGTATGTGGTACAGAGTTCCTTTTAAACCCGCTGTATAAGTCAATTATTCTACTCGCGCTATGGTTACCACATAAAAATATCGTTCAGATTATGTATTTCAAGATATTTGTTAGGTTTTTGTTTTTAAATGACTTCTGTTTGTAGGACTAGATTCTTGCGTATTCATCCCAAGCCTTTGTGGCTAATTACAAAAGTTAAATCTTAAGCCATGGCGATGCAGTGGGTAGCACGTTCGCCTCACAGCAAGAAGGTCGCTGGGTCGCTGGTTCGAGCCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCATTCATGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGGTACAAGTGAATTGGGTAGGTTAAATTTTCCGTAGTGTATGAGTGTGTGTGTGAATGAGTGTGTGAATGTTTCCCAGGAACGTGTTGCGGCTGGAAGGGCAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa2423
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004546 Nonsense 277 620 7 15
ENSDART00000126848 Nonsense 277 620 7 16
ENSDART00000134161 Nonsense 277 557 7 13
ENSDART00000142322 None None 147 None 3
ENSDART00000145011 Nonsense 277 557 7 13
Genomic Location (Zv9):
Chromosome 8 (position 47181679)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 45333534
GRCz11 8 45341413
KASP Assay ID:
554-2724.1 (used for ordering genotyping assays)
KASP Sequence:
TCCTGTATGTRGGCAGAGCTCAGAAAAGACTCGAGAGGCAGGGAGAGCTC[A/T]AGCGCAAGTTTGAGCAAATTAAGCAAGAGCGCATACAACGTTACCAGGTA
Long Flanking Sequence:
GTGTATATTAAGAACTTTGGTGAAGACATTGACAGTGAGAAACTGAAGAATATCTTCACTGAATTTGGTAAAAAAAATAAATAAATAAAATTTGATATATATATATATATATATATATATATATATATATATATATATAAAATGCAGTAACATTTTATTCCTGATTTTAATTTAATTCCTGTGATTCTTTATGAAAAATATACATACTTGAAGTTGTCTCTGATTCACAGGTAAAACTCTTAGCGTCTGTGTGATGACTGATGAAAGGGGACGCTCCCGTGGCTTTGGATTTGTCAATTTTGTCAACCATGGCGATGCTAGGAGGGTAAAAATGCAAATACAGATGTATCTTCATTATATGATAGTGACGGGTAAACAGAGATTTAACTTTTTTTTTCTCTTTGTGGTAGGCAGTAACTGAAATGAATGGCAAAGAGCTCAATGGCAGGGTCCTGTATGTAGGCAGAGCTCAGAAAAGACTCGAGAGGCAGGGAGAGCTC[A/T]AGCGCAAGTTTGAGCAAATTAAGCAAGAGCGCATACAACGTTACCAGGTACACTCATTTCTCTGCATTTTAATCAGCACAGGATGTATTCGACATCATCCTCATTATGTGAGATGGATTTGTATGTGGTTTTATCTGGAAACGTGTTGTGATGCACAAGTTGTTTCTTTAATTTTAGGGGGTTAATCTCTATGTGAAAAATCTGGATGACAGCATTGATGATGAGAAGTTGAGGAAGGAGTTTGCACCTTATGGAACCATCACCAGCGCAAAGGTAATATAAAAAAATACATGTGCCTTTTATAAAACAATGCTGTAGGTTTAACCAGTGAAACTAAAAGTGTTTTGCAGTGCTGAATAGTTTAATAAATAAGAATATCATTAGTGTGAGTACCACCAGTGTGTAACTATAAAGTCTGCAATCTCCATCATGGCTTGAGTTTATTACACATGAAGAGAGAAAATAAATCCCATGTAATGCTGTGTATGCTTTATATTAAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41286
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004546 Nonsense 552 620 13 15
ENSDART00000126848 Nonsense 552 620 13 16
ENSDART00000134161 Nonsense 552 557 13 13
ENSDART00000142322 None None 147 None 3
ENSDART00000145011 Nonsense 552 557 13 13
Genomic Location (Zv9):
Chromosome 8 (position 47173879)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 45341334
GRCz11 8 45349213
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGGCCAGGAGCCCCTTACTGCCTCAATGCTGGCAGCTGCACCTTTAAAA[G/T]AGCAGAAACAACTACTGGGTAAGTGAAGCTTACTTAAACCAGTGGTTCTT
Long Flanking Sequence:
AAGTACCATTACTTGCCAATAAATGTAGCTCTAGAGGGAGCTGTAAAACAGGAGTTGTATATGAGGGAGAAAGAGAGTAGTCATGAAGAGAGTACAAGGACAACACAGAGTTTTAGGCAGAGTGTGTGTTTGTGTGATTTTCTGACACTTACCAGTAGTTTTACTACAGAAATGTATTGTTCAGGAAAATGCTACTAAACATTTATAGTGGTCGGCATTTGAAGTGAATCAGTTTTGACCAACCTTAAATGTTGACTAAATCGCTGCAACTTTTGTCAGTTCATAGAAGTCTGAAATGCAGTATTTACCATTCATAGTGTTGCAGCACCTTAGTTCAACAAGATACATAGCTGCTACATTAATATAGAAAAATATGTACTTTGAGTATATCAGCCTTTTTTCCTTTTTTTTTTAAGGTTGTGCAAAATACAGAACCAGCAGTTCATATGAAAGGCCAGGAGCCCCTTACTGCCTCAATGCTGGCAGCTGCACCTTTAAAA[G/T]AGCAGAAACAACTACTGGGTAAGTGAAGCTTACTTAAACCAGTGGTTCTTAACCTGGGGCTTGTAATTCAAAATAAGGACTTGATAAAGATTTTTGAGAGCTTGCCGAGCGCACTTGTTTTAGGATTACAAGTAGGGCTAAATCATATACCAGTCTGATGATACAATTTGATATGTATTAATCTTTTACCTGTTAGTGTTCCACTGTACTGCCCATGATGCACTGAAGCTGCATTTTCATTATTGGGCCGAATGGTTTTGAATCCACATCTTCATGTGAAATCAATTCATGATGTTTATTTTGCTAGCGCACATTTATTTTGTTTTTTTGGGGGATGGTGAACAATAAATCAGTGCAAGTTAGGCGATGTTCACAATTAGTTTCATTTTAAAACATATATTTTTCTCTCCTTTTGTCCACACTGTGACTTTTTAGGGAACGAAAATGTATCTTTTTGGAAGACCTGGCCCAAGTGGATACATTTGAAAATGTTGTTTTTG
Associated Phenotype:
Not determined