ZMP
arid1ab
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to vertebrate AT rich interactive domain containing protein family [Source:Uni
Human Orthologue:
ARID1A
Human Description:
AT rich interactive domain 1A (SWI-like) [Source:HGNC Symbol;Acc:11110]
Mouse Orthologue:
Arid1a
Mouse Description:
AT rich interactive domain 1A (SWI-like) Gene [Source:MGI Symbol;Acc:MGI:1935147]
Alleles
There are 5 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa325 | Nonsense | F2 line generated | Not yet available |
sa13632 | Essential Splice Site | Available for shipment | Available now |
sa9694 | Nonsense | Available for shipment | Available now |
sa13031 | Nonsense | Available for shipment | Available now |
sa11863 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa325
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000084272 | Nonsense | 340 | 2135 | 2 | 20 |
ENSDART00000140747 | Nonsense | 340 | 2101 | 2 | 20 |
The following transcripts of ENSDARG00000060073 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 19 (position 30836693)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 14528073 |
GRCz11 | 19 | 14390268 |
KASP Assay ID:
554-3340.1 (used for ordering genotyping assays)
KASP Sequence:
AGCAGCAGGGGCCTCCCCCTAGCTCACAGCAGGGTCCTCCTTACCCAGGG[C/T]AGGGTTATGGACCTCCGGGACCTCAGAGGTATCCCATGGGCATGCAAGGC
Long Flanking Sequence:
TTTCACTCTCTCATTCATTCAGCGCCAGTTTCTCCTCCCTTCGCTGGCACTGTTTTTGAAACATACAGATCTATTTTTGATTTTGGGTGGTGTGTCTGGCTAATACTCTGTTAAGAATGATAACAATCACAGCGGCATAACAGAGGAAATAGGCCTCTCTTGATATTGATCACCGTTGACTGCATTTTAACCAGAGAAGCCTAAGTGAATGCTTTCAGAAAATTAATGATCCAAATGCTTTGCGTGCAGGTTACTGATGCCGCAAACTGAAACGCACCACAATAATTTCATCTGTTTTATGGGACTAGATGATTTTGAACTATACAGCTGTGTTACCTGCACATCTTTTCATTTCTTTATTTTTTCTTCTTCTTTTACAGCCTCCTGGACCTATGGATCAGGTGGGAAAAATTCGTGGGCAGCACTATGGTGCCGGAAACCCCTACTCTCAGCAGCAGGGGCCTCCCCCTAGCTCACAGCAGGGTCCTCCTTACCCAGGG[C/T]AGGGTTATGGACCTCCGGGACCTCAGAGGTATCCCATGGGCATGCAAGGCCGCACTTCTGGGAACTTAAGTGGAATACAATATGGACAGCAGGTAGGCTTAAAGGTTTTTTAATATTATTATTTTTTATCCTTTAATATTCAAAATATGATCCTTGATGTAAAGCATAAATGTGTGGCAGGTAGAGAACCAAATCAACACAAGCTAAAACTGTGAAAAGTGTTCGATAAAACCCCCCTCAAAAAAGCAAGAAATGTGATAGTTGGTTTATGGCGTTTTAGATGCTTGCTTGTTGTGACCTGATAAGTCAGTCATTTTAACTTTAAACTGAGCTTCTGTTTACACTATTGTGTGTTTTGCACAGCTGAAAATGCCAGCACTCTTCTAAAATGCTCAGCTGTGAGCGTTTGTCCAACTGTTGGAGTATTTAAAAAAACAACAACACTGAGCACACGCTTTGCTTAAAACACACACTCAGCACCTCACAGCGCTGCTGGTGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa13632
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000084272 | Essential Splice Site | 711 | 2135 | 6 | 20 |
ENSDART00000140747 | Essential Splice Site | 711 | 2101 | 6 | 20 |
The following transcripts of ENSDARG00000060073 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 19 (position 30865835)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 14557215 |
GRCz11 | 19 | 14419410 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGTGTCCAGTCRGATGGTATGTTACATTCCTCCATGGGYCAGRATAGAGG[T/G]GAGTTTAGATYCATTTTCAGTAATGTTTTGTTATTTTTACAGTTTGGCTT
Long Flanking Sequence:
TGAGAAGCAATGAAAAGCAGCAGCTATAGTGAAACTTGCCCTGTCAAATATCTCTAATAACATGTTTCTATTTCTCTTGTTGTTCTATACAGGATCTATCAGGCTCCATCGACGATCTACCCACAGGCACAGAGGGTGCTTTGAGCCCAGGCGTGAGCACATCAGGTGTGTCCAGCAGTCAAGGTGAACAGAGCAACCCTGCACAGTCTCCATTCTCTCCACACACCTCCCCTCACCTATCAGGGATCCGCGGCCCCTCACCTTCACCCGTGGGCTCACCTGCTAGTGGCCCTGCTTCCCGCACGGGACCTCTTTCACCTGGAACGATGCCTGGTAGGACACCTGTTTGCTTACCTGACGTGGAAGTGAAAGAAATCAGAGAATAAGATAATGTTTTAAAATTGACTTCCCCCGTCCACTACAGGAAACCAGATGCCCCCCAGACCCTCAAGTGTCCAGTCAGATGGTATGTTACATTCCTCCATGGGTCAGGATAGAGG[T/G]GAGTTTAGATCCATTTTCAGTAATGTTTTGTTATTTTTACAGTTTGGCTTAGTTTTGCCTGAAGTGGTATAATCAGATTAAATATTAAAGGGCCATGAAACCCGCCTGTTTGAGCAGGGTTTTTTCAAACCTCTACTTTGGAAAAAGTCAGGAAAATGGGCGTGTCCAGCTCTGTTTAGGGGGAAAGAGGAAAGAGGGAAGGTCCGTAAAAATTTGCATAAATATGGAAGTTACTGTTTGGGCACGCTGATTTTCACAGAGGCAAAACAAACACACAGACGCAGGGGAGAATTCAGGGGAGAGTTGTGCGTCGCGTGCACTGTAATCCACACATGAGTCCAGCTTGAAAACAAAACCTTCACTGCAGCAAATTATAAAAGCAACACTGACGACCCGTATCTCCAAACTATTCATGTTCTCCCTCTTGTTTTGGCAACACAATGTGGCGTCTCTCTGCCGTCTGAATACTGTTAACAGGTAAAAACGGTCTTCGAAGCTAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa9694
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000084272 | Nonsense | 748 | 2135 | 7 | 20 |
ENSDART00000140747 | Nonsense | 748 | 2101 | 7 | 20 |
The following transcripts of ENSDARG00000060073 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 19 (position 30867323)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 14558703 |
GRCz11 | 19 | 14420898 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTCGGCAAACATCTGGAAGCCAAATGCATGCTGGGATGGGTTCCTACCCA[C/T]AGAACAACTCCATGGGCAACTATGGGCCGCAGAGTGGCCAGTATGGACCA
Long Flanking Sequence:
GCTCAGCTGTTTTAGCTAATTTAGGCAAGGCAAGTTTATTTATATAGCACATTTCATACACAGTGGCAACTCAAAGTTCTTTACTTAAATAGGAATACAAAAGACAAGTATAAGCAAATAGAAACAAATAATTTAATCATATTAAATTCTAAAATAGAATTTAATCATATTGGTTTTGGGTTGTGAAATTTCTGTTTACAGAAACTGTACCGCAGACGGCCTATTTAACTTTGACACATTTTCATGGTATAAAAGGCTTCTTTTACAGCAGTCAAAAAATAAATAAATACAAAACATCATCAAGAGCACCTGGATCCACACCACAACTACTTGCATGAAAATAACCTCAAGGGTAGTTTACTATAGTCAATCTGTGTCCACTCTCAACAGTATATATGAGGAACCCTCAGATGCCTTACGGCTCTCCTCAATCTGGGTCAACTTTATCCCCTCGGCAAACATCTGGAAGCCAAATGCATGCTGGGATGGGTTCCTACCCA[C/T]AGAACAACTCCATGGGCAACTATGGGCCGCAGAGTGGCCAGTATGGACCACAAGGTGAGAAGCTTGGGTTAGGCCGAAATAAATAGCTTTTTCTCTCATTACTTAAGCCTAGTGTACATTGTTAAACGTGTTAATTTGTTGAACAGGTTACCCGAGACCACCAGGTTATGGAGGCATGCCTAATGCTAACTATCCCGGCGGTCCTGGCATGGGGGGCTCCATGAATCCTATGGCAGGGCAGGGTGGAGGAGGGCCTTATGGAGGGATGCCTCCAGGGCGCATGGGACCGGGACAGATGGGTACGAGGCCGTACGGCCCTGGCATGGGCCCCAACATGGGTGGCATGCCTCCTCAGGTGGCATCTGGAATGTGTCCTCCACCTGGAATGAATAGAAAGCCTCAGGATCCTGCTGCTGCGGGCATGCACCATGGCCCATCCAACTCCATACACAGGTACACTGCACCACATACTGCTTTCAAAAAATTAACTCGGATTGAGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa13031
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000084272 | Nonsense | 762 | 2135 | 7 | 20 |
ENSDART00000140747 | Nonsense | 762 | 2101 | 7 | 20 |
The following transcripts of ENSDARG00000060073 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 19 (position 30867367)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 14558747 |
GRCz11 | 19 | 14420942 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TACCCAYAGAACAACTCCATGGGCAACTATGGGCCGCAGAGTGGCCAGTA[T/A]GGACCACAAGGTRAGAAGCTTGGGTTAGGCCGAAATAAATAGCTTTTTCT
Long Flanking Sequence:
TAGCACATTTCATACACAGTGGCAACTCAAAGTTCTTTACTTAAATAGGAATACAAAAGACAAGTATAAGCAAATAGAAACAAATAATTTAATCATATTAAATTCTAAAATAGAATTTAATCATATTGGTTTTGGGTTGTGAAATTTCTGTTTACAGAAACTGTACCGCAGACGGCCTATTTAACTTTGACACATTTTCATGGTATAAAAGGCTTCTTTTACAGCAGTCAAAAAATAAATAAATACAAAACATCATCAAGAGCACCTGGATCCACACCACAACTACTTGCATGAAAATAACCTCAAGGGTAGTTTACTATAGTCAATCTGTGTCCACTCTCAACAGTATATATGAGGAACCCTCAGATGCCTTACGGCTCTCCTCAATCTGGGTCAACTTTATCCCCTCGGCAAACATCTGGAAGCCAAATGCATGCTGGGATGGGTTCCTACCCACAGAACAACTCCATGGGCAACTATGGGCCGCAGAGTGGCCAGTA[T/A]GGACCACAAGGTGAGAAGCTTGGGTTAGGCCGAAATAAATAGCTTTTTCTCTCATTACTTAAGCCTAGTGTACATTGTTAAACGTGTTAATTTGTTGAACAGGTTACCCGAGACCACCAGGTTATGGAGGCATGCCTAATGCTAACTATCCCGGCGGTCCTGGCATGGGGGGCTCCATGAATCCTATGGCAGGGCAGGGTGGAGGAGGGCCTTATGGAGGGATGCCTCCAGGGCGCATGGGACCGGGACAGATGGGTACGAGGCCGTACGGCCCTGGCATGGGCCCCAACATGGGTGGCATGCCTCCTCAGGTGGCATCTGGAATGTGTCCTCCACCTGGAATGAATAGAAAGCCTCAGGATCCTGCTGCTGCGGGCATGCACCATGGCCCATCCAACTCCATACACAGGTACACTGCACCACATACTGCTTTCAAAAAATTAACTCGGATTGAGAAGTTGAGCCAAATTCTGTTTCTAGTTCCTAGTTGAAGAACAGAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11863
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000084272 | Nonsense | 1045 | 2135 | 12 | 20 |
ENSDART00000140747 | Nonsense | 1045 | 2101 | 12 | 20 |
The following transcripts of ENSDARG00000060073 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 19 (position 30874861)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 19 | 14566241 |
GRCz11 | 19 | 14428436 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCACWAATCTGAATGTGGGCACATCCAGTAGTGCGGCCAGCTCWCTGAAG[A/T]AACAGYACATCCAGTGTCTCTATGCCTTTGAGTGCAAGATCGAGCGAGGA
Long Flanking Sequence:
TGTAGTACGAATTTGTTTTTATCTTGTATTATTTTGTGTATATCCATTTTATATTCAAATATCCATTTTGCCATAAGCTGCTGATGTGGCAATAAATAAATAATAATAAATAAACCATAATGTGCATATTGCACTTTCAGCCGGCCACATATCCGATATAGACTTTACCCACTGTAGGTTCTCACCCCTAGCAACTAGTGTTACTAATAATGTGGGTTTCTGAATTCTACAAACCCTCTTTAATGCGTGAATAAGACCAAGAACTGCAAGAGTTTTTAAGGTCTTTTTAATACATATTTCCTTTCATCACAAAACCAGTGCTTATTTTAGCTTCTGGTCGATACGTACAGTATATGAGTTCACTAAAGGTCTTCTCGGCCTACCTCAGTCATTAAATTCTATCTGTGTGCTGTTTTCAGGTGAACAAGAACAAGAAGTGGAGGGAATTAGCCACAAATCTGAATGTGGGCACATCCAGTAGTGCGGCCAGCTCTCTGAAG[A/T]AACAGTACATCCAGTGTCTCTATGCCTTTGAGTGCAAGATCGAGCGAGGAGAAGACCCGCCACCTGACTTTTTCAATAATGACCCTAAAAAGAACCAGGCCAAGGTCCAGCCTCCGTCACCAGGTCAGTTCAGACAATTTCACATGTTTGATCTCAATGCCTTGATGCTAGTGTGAATCCAATGGCATTATCTTAAAAATCCTCTTCCCAGAGTTGTAGATTAAACATCAATTATATTTTAAATAGATTTGGCACTTTGATTTATTATTTTTTTCTTATAAAGTTCGATAAACAGGGGTATGCAGAATGCAGGGAAGTAGAGATGAATGTGAAGTAATAGTTGTGTTTTTTTCGCAGATGCAGGTCTATCCAGACTTAATCAGACTTGAAAGATGATAACTGCTTAGGCATAAAACCTTTCCCGATGGCCTGATAATGCACCTATAAATGTCTAGATTAATGTGATTGTAAACGCCAATCTTTATAGTGTTCATGTCTTG
Associated Phenotype:
Not determined