Busch Lab

ZMP

pcdh19

Ensembl ID:
ENSDARG00000034344
ZFIN ID:
ZDB-GENE-030131-4218
Description:
protocadherin 19 [Source:RefSeq peptide;Acc:NP_001120991]
Human Orthologue:
PCDH19
Human Description:
protocadherin 19 [Source:HGNC Symbol;Acc:14270]
Mouse Orthologue:
Pcdh19
Mouse Description:
protocadherin 19 Gene [Source:MGI Symbol;Acc:MGI:2685563]

Alleles

There are 8 alleles of this gene:

Allele Name Consequence Status Availability
sa22531 Nonsense Available for shipment Available now
sa22530 Essential Splice Site Available for shipment Available now
sa12445 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa22531
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125788 Nonsense 439 1088 1 5
Genomic Location (Zv9):
Chromosome 14 (position 41692308)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 40020386
GRCz11 14 40388384
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GACCATTCTGGCCGAGGACAGCGGGTATCCCCCGCTCAGAAGCTCGAAAT[C/A]GTTTGCGGTGAAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCA
Long Flanking Sequence:
CGAGGTGGTCTACTCATTCATAAACTTTGTCTCCAACCTGACCAAACAGATGTTTAAAATCGACCCCAAAACAGGTGTAATCACAGTGAACGGCGTTTTGGACCACGAGGAACTGCACATTCACGAAATTGACGTACAAGCCAAAGATCTGGGTCCAAATTCAATCCCTGCCCACTGCAAAGTGATTGTTAACGTAATCGACATAAACGACAACGCGCCCGAAATCAAACTGTTGTCGGAGAACAGCGAGATGGTAGAGGTGAGCGAAAACGCTCCTCTCGGATACGTGATAGCACTGGTGCGAGTCTCAGACAACGATTCCGGAGCGAATGGGAAAGTGCAGTGCAGACTGCAGGGCAATGTGCCTTTTAGACTCAATGAGTTCGAGAGCTTCTCCACCTTACTTGTTGACGGCCGTCTGGATAGAGAGCAGAGAGACATGTACAATTTGACCATTCTGGCCGAGGACAGCGGGTATCCCCCGCTCAGAAGCTCGAAAT[C/A]GTTTGCGGTGAAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCAAGCCCCATTATCAAGCCATGGTGCTCGAAAATAACGTCCCAGGTGCGTTTCTTCTGGCGGTGTCCGCCAGAGACCCTGATCTGGGCATGAACGGCACCGTGTCGTACGAAATCATCAAATCGGAGGTGCGGGGCATGTCTGTGGAATCTTACGTGACCGTCAACTCAAACGGCGAAATATACGGCGTCAGGGCTTTTAATCACGAAGATACGCGGACATTTGAGTTTAAAGTGTCTGCGAAGGATGGGGGAGATCCACCTTTGACCAGCAACGCCACCGTGCGCATCGTCGTGCTGGATGTAAACGACAACACACCTGTGATGACCACCCCGCCCCTGGTGAACGGCACCGCGGAGGTGTCCATCCCTAAAAACGCTGGAGTTGGTTATTTGGTTACACAAATAAAAGCTGATGATTACGATGAGGGTGAAAATGGGAGGTTAACATATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22530
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125788 Essential Splice Site 845 1088 3 5
Genomic Location (Zv9):
Chromosome 14 (position 41648251)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 39976329
GRCz11 14 40344327
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TATTCCATTGACTCCAGTTATGTAAACAGCAGAGCACACCTAATTAAAAG[G/A]TACGTCTTAATAGACCAATCAGATTAACTTATCTTATTCAACTTGATGCA
Long Flanking Sequence:
ATATTTTTTTTCACATTAGCATCCTCAAAAGTGTTTTGAGGAAAAGCAGCACTCGGAAGAGAAGAAACTTTCTTCTTAAAGCCCCAACCCCCTCCTCTATTCCCCTGTCTGGCTTAATGACATTTTGAAGAGCGTGGTCTGACTAAGGATGGTTTTGTGGGTTGGGGTGGGGTGTTGGGGGGGAGGCTGGAGGAGTGACGACAGGAGCAGACTCACTGCAGCAGAACAGGCCACATGTGCTTAGAAAGAGAATGGGGGAGTTTGCCTTTGAAAAGCCCAGGCAGCTAACTAGAGTCTTTGTGTAAAATAACATTTCTATTGAAAGGCAATTACTAGTGACATTATTTTGGTTGCTGCATAATTAAATTCATTTTTGTTCTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTTTAATTCTGTCTCTTTCCCCTAGACGGAGAATTATTCCATTGACTCCAGTTATGTAAACAGCAGAGCACACCTAATTAAAAG[G/A]TACGTCTTAATAGACCAATCAGATTAACTTATCTTATTCAACTTGATGCATTCTTAAAGCAGTCTTCATTTCTTGTTTTGTTTATTTTAAGTGGTGTATTATTCTGTATTTGCATGTAATATAAGTAATATACACTACCTGATAAAAGTCTTGTCTCCTATCCAAGTTTTAGGAACAACAAATAATAACTTGACTTCTAGTTGATCATTTGGTATTAGAAGTGGCTTATATGAAAGACAAAGGCCTCTAGATTACGTTTATTTTACCAAAATAAAATATGATCATGCCTTGATTTTTAATGATTTAATTAGGACAGTAAGGTCTTGTCACTGAACAGAAATAATATCCAGTATAGAATATAAAGCCATGGTGCAGTGAAAAGAGATTTAATATTGTGTATGACTCCCATGAGCATCAATATATCTCCGAAATGACTTAACTTTGTCATCTGGAATGGCAAAGAAAGGGTTCCTGCAGAACTTCCAGAGATTATCAAGATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12445
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125788 Nonsense 857 1088 4 5
Genomic Location (Zv9):
Chromosome 14 (position 41643361)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 39971439
GRCz11 14 40339437
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTCACCTGGCTGTAGCACGTCAAYATTCAAGGACATGGAAGGAARCAGTT[T/A]GAAGGACAGCGGGCACGAAGAGAGCGACCAAACAGACAGTGAACATGACG
Long Flanking Sequence:
TCACATTCATTGTTAAAGATTCAATGAAACAATATTTCTTAACATTCACCTTTTGTTTTACGCAGAAGAGAGAAAAAAGTTGCTTTTTAATCTGAGCATAGCATAATTGTAATGTTCAGACCGACGACAGAGTTTCATTTTTAGATCCACTCTTCATTACATGTCTGCACTCAATAGATACAAAGGACATATTTCTGAAATAGCCTATAGAAAATGTAGGAACACAGAAAGCGACCTATAAAAGCTCTGCCCAGCGAAAGTCAGTACAGGCCATTGACTCCTGATCCTTTACCCTGACCATATCAGAATGTGAGAAAAGCTGCTTCTTTTCAGCTTCACCACCTGGGTGGCTAGACAATAAGCAGAGGTAGCATGAGGTGAAGAGACGGAAAGTGATGAAACCAAAGTTGACAGTTAAATAACCTTTTCTTTCTCTCTCCTCCTTTCTCCTTCACCTGGCTGTAGCACGTCAACATTCAAGGACATGGAAGGAAACAGTT[T/A]GAAGGACAGCGGGCACGAAGAGAGCGACCAAACAGACAGTGAACATGACGTCCAGAGAGGGCACTATGCTGATACAGCTGTCAACGATGTCCTGAATATGACCGTACCCTCAAACAACTCACAGATACCTGACCAAGGTAAGACACAAAGGTCTTGACTAGCTGAGAGCATCCATAAAAAAAAAGTTAAGAGTGGCTTTCTAGAAAGATTCAGCCTTGAGGCGCCTTGCTAATGCACAGGCAGCACTTCTCTTCCTGCCGTGTCTTTGATACCAGCCCATGAACATTATTGACGGATGTGAGCCACGTCGACTGCAACACTTCAGATCCAGACCTAAATGGCAGCAATTAGGCCGACAAAGGTTGGAGGTGGAAATCTACATATCACGCAGTCTCCTCATACATAATTCATTTAGCAGGGAATTAACGTTGATGTTTCTTTTTTACCTTCGCTGCCGTTAAAGACATCCGGTATGTTGGCAGGAGTCAGTAGGAGGTCAT
Associated Phenotype:
Not determined