ZMP
slco1c1
Ensembl ID:
ZFIN ID:
Description:
solute carrier organic anion transporter family member 1C1 [Source:RefSeq peptide;Acc:NP_001038462]
Human Orthologue:
SLCO1C1
Human Description:
solute carrier organic anion transporter family, member 1C1 [Source:HGNC Symbol;Acc:13819]
Mouse Orthologue:
Slco1c1
Mouse Description:
solute carrier organic anion transporter family, member 1c1 Gene [Source:MGI Symbol;Acc:MGI:1889679]
Alleles
There are 5 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa33362 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa9443 | Nonsense | Available for shipment | Available now |
sa8495 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa33362
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000039083 | Essential Splice Site | 139 | 710 | 4 | 15 |
ENSDART00000134442 | Essential Splice Site | 139 | 689 | 4 | 15 |
ENSDART00000141760 | None | None | 90 | None | 3 |
The following transcripts of ENSDARG00000016749 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 4 (position 2573100)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 4 | 2771979 |
GRCz11 | 4 | 2702090 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGG[T/G]AAGTCAGAGTGTGTGTTTCTGTCACAGCGAGGGTCACATGGATCCAGTTT
Long Flanking Sequence:
GGAAAAAGTGACTTTTAAGATCATTTTGAATAGTTTAAAGTGATTTATTGTCTGGGTTGGTGTTATATATTATGCTAAAAAAGTTATTTTCTGTTATTTTACAGAATTATTTCTCTATATAATAATATTTCTTATACATTATATTATTTAAAACTAATAAATGTCACTAAAAGTCACTTTGTTAAACAGTTGAGTTGAATTTTCAACATCTACAGAGCAGAGATCAACATCCCATAATGCAATTCATAACCCTAAATAAACAGAAAATGTTACAAAATATGCAAACAGTTAATTAACAGATATATTTTACAGTGTATGTGTATATAAACATGGCTAGTCTAACCAGCTCTCCTGCTATCTTTCTAGGCAACTTGTTAGTGATCGCCTTTGTGAGTTACTTTGGTGCCAAACTTCACCGTCCGAAAATCATCGCCATCGGCTGCCTGTTGATGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGG[T/G]AAGTCAGAGTGTGTGTTTCTGTCACAGCGAGGGTCACATGGATCCAGTTTGATCTCGTTAAAGAGCGCAGATGCCTTTGAGTTTGCGGTCAGACTCTTGTGTCGTCTCTGTGTTTCTTGGCATCGTGAAGCTGCTCTATGCTTTAGTGGATGTAAAGAACAAGCTGGATTTTGCCTGACTTTCACATTTACCTTAGAGTATTATTGAGCGTGTAGCAGGTTTACAGTTAATACACTGCGCTTATAGATGTCCCCAAATGATGTGGTTTTCCAAATGATGAACAGATTCAGGAAATTTTTACAGTATTTCCTATAATATTTTTTCTTCTGGACAAAGTTTTATTTGTTTTATTTTGGCTAAAATAAAAGCAGTTTTGATTTTGTTTAAACCATTTTAAGGTCAATATTATTAGCCCCTTTAGCAATATTTGTTTTGGATTGTCTACAGAACACACCACTGTTATACTATGACTAGCCTAATCACTCTAACTTTACCCTAAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa9443
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000039083 | Nonsense | 297 | 710 | 8 | 15 |
ENSDART00000134442 | Nonsense | 297 | 689 | 8 | 15 |
ENSDART00000141760 | None | None | 90 | None | 3 |
The following transcripts of ENSDARG00000016749 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 4 (position 2566284)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 4 | 2765163 |
GRCz11 | 4 | 2695274 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTT[T/A]GCCACTGCCAGAGAGAMGACTGAGCAAATACTCTCCGGAGCGYAACAGCT
Long Flanking Sequence:
TTTATTTTGTTTTATTTTGTTTTGTTTTGTTTTGTTTTCATTTTATTTATATTGTTTTATTATTATTTAAATTTTATTTTATTATTTTATTTTATTTAATTACATTTTATTGTTTTTTATTTTATTTAATTTTTTATTTATATTAAATAAAAAATGTTAAACTTCATTTACTTTGTTTCATTTAATTAATTTATTATTTTATTAAAAAAGATTTTTTATAATTTTTAATTAATTTAATTTAATAATATAATTAAATAATTAAAATAATAAAATTAAATAATTTGATAATTTTTTTTAATTGTATTTACTTTATTTTTTAATTAATTCATTATTTATTATTAATTATTATTAATTTATACTGTGTTTTTCTGTCCTCCCAGAGAGCATCAGCATCACTCCAGGAGACGCGCGCTGGGTCGGCGCCTGGTGGCTAGGCTACCTGATTGCCGGATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTT[T/A]GCCACTGCCAGAGAGAAGACTGAGCAAATACTCTCCGGAGCGCAACAGCTTCATCAAAGACTCGGCTCTGCTGGAGCACAAATACCAGGCAGACGAGCCGGCTAACTTCCTGGAAATGGCCAAAGGTAAAGCGCCTCAAGTTCACTGGAAGAGTAAAGAGTTCAGATTTCTGACATCGAGGTCATTATAATGTCATTACAACTGTAGCAATAATATATCAACCTTTACACTGGGTGTTATTTTTTAGGAAGTTAAAAATGAAGATTTTATATATCAGATGCATTTACTTGAGAAACAAAAAGACTTTTTATGCACGTATATCTATATGTCTTTTTGCTTCCCAAGGAAACTTATATGATTTATGTATGTGTGGATATTCTGTGGGAAAACAAGACACAACAAGACACAAATACCTGTTTAAAAAACACATTTTTGCAGTGAAATGATTACACAAGTGCGTAAGAAACAAAGCAATGTTTTTACACAGCATAAAATGATAG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa8495
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000039083 | Essential Splice Site | 459 | 710 | 11 | 15 |
ENSDART00000134442 | Essential Splice Site | 459 | 689 | 11 | 15 |
ENSDART00000141760 | None | None | 90 | None | 3 |
The following transcripts of ENSDARG00000016749 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 4 (position 2560858)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 4 | 2759737 |
GRCz11 | 4 | 2689848 |
KASP Assay ID:
2259-4355.1 (used for ordering genotyping assays)
KASP Sequence:
GCATTAGAGGAWAAATKAATAATTGCTTCKCTAATGCTTGTGTGTCCATC[A/C]GGACRGAGAGTCTGTTTATGGCRGACGGCTCTCTGCGAGCGTCCTGCAAC
Long Flanking Sequence:
CCCTGCTGAAAAATCCAGCCTAAACCAGCCTAGGCTCGTTGACTGGTTTTAGCTGGTCGACCAGGCTGGTTTTAGAGGGGTTTTGGCCACTTCCAGGCTGGTTTCCAGCCATTTCCAGCCTGGTCTTAGCTGGGAGATGACCAGCTAAAACCAGCTTGACCAGCCTAGCCAAGCTGGGAGTCCAGCCAAAACCAGCTAAATCCAGCTTAAACCAGGCTGGTCAAGCTGGTTTTAACTGGTTTTAGATGGTCATTTTCCAGCCTGACCAGCTAAGACCAGGCTGGAAATGGCTGGAAACCAGCCTGGAAATGGCCAAAAAGCCCTCTAAAACCAGGCTGGTCAACCAGCTAAAACCAGCCAACCAGCCTAGGCTGGTTTAAGCTGGATTTTTCAGCAGGGCTGTATATTTAGCATAGGTTTTGCTGTGAATATCGCCAATGCTGCTGATAGGCATTAGAGGAAAAATTAATAATTGCTTCGCTAATGCTTGTGTGTCCATC[A/C]GGACGGAGAGTCTGTTTATGGCGGACGGCTCTCTGCGAGCGTCCTGCAACGCAGCCTGTCATTGTCCTGAAAAAAACTGGGACCCGGTGTGCGGAGAAGACGGCCTCACCTACGTGTCCCCGTGCCTGGCTGGATGCCGGACGTCCCACGGCTCAGGAATGGACACGGTGAGCGTGATCCTGAAACAATGGTGTGTGTGTTTGTTGTCCTTTTTTCTTCAAAGACACAATGTGGTGCTCTTGAACTGGGCTTTTTCCCAGCGCTCCCTGAAGGGTGTGTGCACTACCTGTTTGTCTGCAGCTCAAAGGCCAGCTTGAATTTTTGGGCTTCTCTGAAACTTCCTTCCCCGTCTGTCTTTGAGGAGAGCAGGTTTTATTTTTGCGTGTGTTTCAGTGCATCTGAAAGGCTGAGGTATTTTAATGCGCAGACGCTGGTTTCCGCTTCTCATCCTCTGTGTGTGTGTGTGTGTTTCATATCTCCAGCATCTGTTATGTGCTGCG
Associated Phenotype:
Not determined