ZMP

msxd

Ensembl ID:

ENSDARG00000006982

ZFIN ID:

ZDB-GENE-980526-492

Description:

Homeobox protein MSH-D [Source:UniProtKB/Swiss-Prot;Acc:Q01704]

Human Orthologues:

MSX1, MSX2

Human Descriptions:

msh homeobox 1 [Source:HGNC Symbol;Acc:7391]
msh homeobox 2 [Source:HGNC Symbol;Acc:7392]

Mouse Orthologues:

Msx1, Msx2

Mouse Descriptions:

homeobox, msh-like 1 Gene [Source:MGI Symbol;Acc:MGI:97168]
homeobox, msh-like 2 Gene [Source:MGI Symbol;Acc:MGI:97169]

Alleles

There is 1 allele of this gene:

Allele Name	Consequence	Status	Availability
sa935	Nonsense	F2 line generated	Not yet available

Mutation Details

Allele Name:

sa935

Status:

F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000003441	Nonsense	92	226	2	2
ENSDART00000123722	Nonsense	117	251	3	3

Genomic Location (Zv9):

Chromosome 21 (position 40053335)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	21	41285051
GRCz11	21	41145858

KASP Assay ID:

554-0840.1 (used for ordering genotyping assays)

KASP Sequence:

GNNNNTTTTTTTTTTAAAAATATATATATTTCCTACAGGCCAGGAAAGTCCCTG[T/A]CCTCTCCGCAAGCACAAGACCAATCGCAAACCCCGTACACCATTCACAAC

Long Flanking Sequence:

ATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTACTTTTTTTAACTAATGTAAAATATAAAGGAAATTAATTATGTTTAAAACTTATGTTCAAGAATTATAACAGAAGATTCACTCCTTTTTCTTATTCCTTTTGTTTATTTTTTATTTATTATTATTATTGATAAATTATGCAATATAAAACATTGAATATAGTTTATGCTGTGTTGCATAAAAAACACTTAATTAAACTCAAAAGTAATAAAAAAAACATGAGCTTCCCTTTCCCGTTTTTTTTTTTTCCAAAATATTTAAACAAAATAAGCATTTCATCTTTTTTAAACCTCATTTTAAGTTTTTTTTTTAAAAATATATATATTTCCTACAGGCCAGGAAAGTCCCTG[T/A]CCTCTCCGCAAGCACAAGACCAATCGCAAACCCCGTACACCATTCACAACCTCACAGCTCCTTGCCTTGGAGCGAAAGTTCAGACAGAAACAGTACCTGTCCATCGCAGAGAGAGCCGAGTTCTCCAGCTCCCTCACCCTCACAGAGACCCAGGTCAAGATCTGGTTCCAGAACCGACGGGCCAAAGCCAAACGTCTACAAGAGGCAGAGCTGGAAAAGCTCAAGTTGACTGCCAAACCTGCTCTGCACCCCAATTTCAGTCTGCCTCTTCCTCTTGGGACACAACTTCATTCAGCGGTCTCTCTCTATGGCCAGTCGTACCCTTACCAGAGGCCTTTATTGCCTGTAGCTCCAGTGGGGCTTTATGGGACACCTTTAGGGTACAGCATGTATCACCTCGCATGAGAAGAGCGCTGAAAACTGGACTAGCGGACGTACCTGTGGATGTACAGAAAGACATTGTTTACAATGCCCAATGCCGAAAAAAATAACCCACAAGT

Associated Phenotype:

Not determined