ZMP
si:dkey-85a20.2
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Source:UniPro
Human Orthologue:
TARBP1
Human Description:
TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:11568]
Mouse Orthologue:
AC151908.1
Mouse Description:
TAR (HIV-1) RNA binding protein 1 [Source:RefSeq peptide;Acc:NP_001153379]
Alleles
There are 4 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa22365 | Nonsense | Available for shipment | Available now |
sa18458 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa22365
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113259 | Nonsense | 199 | 1578 | 1 | 29 |
ENSDART00000132198 | None | None | 396 | None | 10 |
ENSDART00000133636 | None | None | 581 | None | 13 |
Genomic Location (Zv9):
Chromosome 13 (position 39837782)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 13 | 39151883 |
GRCz11 | 13 | 39277773 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATAT[G/A]GGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCA
Long Flanking Sequence:
CACAGAGAAGATTGAAGCTCTAACTGTTTTGATCAAGGAGCTCTCCATTAAACCACAAGAAGAGCGCTTTATCCGTAAAATACAGTCAGTGTTATGGAATCAGTGCATGCCGGTAATACAAACCATCTTGAGATCAGAAGATGGAGGAAAGAATCTGCTCAATGCTGTCTGTGGACTGTTTGCAGTTTGTGTCAACGTTTGTCAGAGCAGCGATGTACCTGAGCAGATCCTTCAAGCTCTTCTACCTGTGCTGATGACGAAAGATGACGCCAACCATGAAGCCAATAGAGCTGACATTGAAGTCGCCATCGAAGCCATCGGAGTTTTGTTATCCAGCATCTCAAATGACAGGTCCATCATCTCCAGGACTCTTTCGAGCACCCTTAACTGTGTTAAACATCTATCTGACTCCATAATCTCCAAAATCATAGTGCGCATCTGGTTCACCATGCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATAT[G/A]GGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCACTCGGGTTTTGTTGTGTCTCACTGCTCTTTCTGACCATCTCTGCTCTTCTGAAACATCTCCAAACCGACCGGACCCTAGAAGGTCTCAGAGGTTCTTTAGGGCGGTTCAAGATGGATTGACGCACAGGGATAGTGTGACCCGCAAACGGGCGCTTTATTTGCTTACCAGGTGTGTGTCACTAGCAGAGATGAAGAAAGAAGAAGTGGTTAGCATTGAGGAACATGAAACAGGTGAGTCGATGTTGGATATCTGTCATATTGTCTGAGGTATTTTGTGATTTTTGTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTCAGATGGACACCAGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTATGCTTTAGTTTTAGAGACTCTAGAGGAAAATCAGGTAAGGAGATTTCATGTGGAGCTTCAAATTGATGAAAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18458
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113259 | Nonsense | 393 | 1578 | 4 | 29 |
ENSDART00000132198 | Nonsense | 9 | 396 | 1 | 10 |
ENSDART00000133636 | None | None | 581 | None | 13 |
Genomic Location (Zv9):
Chromosome 13 (position 39842510)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 13 | 39156611 |
GRCz11 | 13 | 39282501 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGTTCATCACCTGTTACAGCTGAAAGCRCTGCATCAGCCTGCTTTTGCTT[T/A]GGCCTTTTCACAGGTATCCTTYCTTCCTTCCTTTATTTYTTCCATCCACC
Long Flanking Sequence:
TGTCACTGCAAATACACAATGTTGCCAAAAGTTGTGGCGTTTGCATTAACAGATCCAAAATGATAACATGAGGAAAAACTAAAAAAATGTCCATAGAAACATACAAGGGTTAAATCAAAAGTTGATGCATGTGCAGTCCAGATCTTTATTAAAATATAATTTATTTTTTGTTATTGGTGTAGATATTCATTCAAACTGTTTCTTTTTCTTTTTCTCTCATATAAAGATTCATGTGATTCGACCTGTACTCAACAGAATAGACATGCTCGTTGAGACAACCACAACTGACATTCAAGGTTGGTCAGATTCCTTTATTGGGAGCACATGCAGGAATATGAGTTAGTCTGATTGTATCTCTCCATCCTCAGGAGGGCTGTTTTCTCCATCATGGCTGCTGTGTGTGTATCAGCGCATGTTTCACAGCGAGAACAAAGCCGTCATGAAGGAAGGAGTTCATCACCTGTTACAGCTGAAAGCACTGCATCAGCCTGCTTTTGCTT[T/A]GGCCTTTTCACAGGTATCCTTTCTTCCTTCCTTTATTTCTTCCATCCACCCTTTCACCGTCCATCCCCCCCATCCATCATTTTATCCTTCCTTTTATCCTTCCTTCTACCCTTTCATCTTCCATACACTTTCATCATCCATTCACCCTTCCTACTTTTATCTTTTCCTTTCATACATCATGTCATCCGTCCTTTTATCCATCCATCCATCCATCCTTCCTTCCACCTTTTCATCTATCGATCCACTCTTTTATCCATCCTTCCTTCCTTTCATTCTTCCTTTTATCTATCATTTTGTTCATTCATACGTTTTCATCCTTTCCTCCTTCCATCCTTCCTTTTGTCTATCCTTCTTCCTACCATCATTCTTTCCCACCATCCATCTTTTCATTCATCCTTCTTTTTATCCATTCATCCATCCATCCTTCCTTTCACCCTTTCGTCTATAGACCCACCCTTTTATCCATCCTTCCTTTCATCTATTATTTTATTCATATGTTT
Associated Phenotype:
Not determined