Busch Lab

ZMP

C0H5V7_DANRE

Ensembl ID:
ENSDARG00000074731
Description:
Collagen type XXVIII alpha 1 b [Source:UniProtKB/TrEMBL;Acc:C0H5V7]

Alleles

There are 11 alleles of this gene:

Allele Name Consequence Status Availability
sa10206 Essential Splice Site Available for shipment Available now
sa14346 Essential Splice Site Available for shipment Available now
sa11556 Nonsense Available for shipment Available now
sa16583 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa10206
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079675 None None 806 None 24
ENSDART00000113637 Essential Splice Site 35 491 1 17
Genomic Location (Zv9):
Chromosome 6 (position 3446367)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 3477591
GRCz11 6 3638411
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGACGTAAAAGTAAACCAATCACCTCAAATGTGATCCCCAAAAACAAAGG[T/G]AAATATCACATGCTCTTCAGCACAAATGCTWTTTAAAACMCTCATTTTCA
Long Flanking Sequence:
CTCACAGCAAGAAGGTCGCTGGTTTGAGTCCCAACTGTGTGGACTTTGCATGTACTCCCTTTGTTGGTGTGGGTTTCCTCCAGGTGCTCTGGTTTTCCCCTCAGTCCAAGGGACTAAGTCGAAGGAAAATGAATGAATTGCATGCAACTTATACAACTTATATCCCTAACTTGCATTATAACCCTAAAATATGTACATGTAATCAATTAGTTAGTAAGTTTATGAATACACACAAGGACACCTTAAAATAAAGTTTGACCAAACAAAAGTGTAGCCATGCCTAATATTGAATATGCATCTGTTTGTCACTTTCCTGCTGTAGTGATGCTGCGGCTGTGTGTGCGTTGGCTGGTTTTGCTGTCGGCAGCGCAGCTTGTTTTGGCTCAGCTGAAGGATTTTGATGATGAAGATGAAGATCCTGAAGATTTTGTAGAAGACAATAGGAATGGAAGACGTAAAAGTAAACCAATCACCTCAAATGTGATCCCCAAAAACAAAGG[T/G]AAATATCACATGCTCTTCAGCACAAATGCTTTTTAAAACCCTCATTTTCAAAACACATTCATTTTATTTTAAAAACTCTAGTCATGTTTTATCTAAGCGGGTGGTGTGAGATAATCAGATTTCATTCTTGTATCTGTTTTTTTGGTTTCCAACAAATGAAACTGATTGAAATACTTCTCAAGAGCTAGAAGAAAAGTTCCTGCATGCAGTCTGCTGTGCTCTCCAGGGCTCCTGAGTTTGATCTAAACCCTGCTTGCTGTCCTGGGGCAAATTTCCTCTTTGACATGTTTCTTCTTTTTCTTCATAAATGTGATTTACTGTAGACCGGGGCCGTTTCAGCTGGTTCACATTTATCTTTAACATTACGTTTGGTTTTGACAGCCACTTTGAGGTATTTGCCTTGATTTTATTTGTATAAATAATCAAACAGTTGTCAAATTATTCATGGCAAATAAAAATCAGTGGCTGACCTTTTTTAATGAAAAAAAAAAAACAGAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14346
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079675 None None 806 None 24
ENSDART00000113637 Essential Splice Site 264 491 5 17
Genomic Location (Zv9):
Chromosome 6 (position 3464235)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 3491922
GRCz11 6 3652742
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AAAGGGTCGTCCTGGAGATGACGGAAGTCCAGGCCCTAAAGGTCAAAAGG[T/C]CAGAGTTTWCTAAAACAACCATAAATAATTCAGAAATAATGTGTCMMCAT
Long Flanking Sequence:
TCTGTCTTCCAGTCATTTTGATCAAAGAGACAAAACACCCATCAAACGGTAACTGTAATTTGCTGGACATATTAGAATTTTTGCGTTTTATTAAAAATGTCAAAAAAATTATTTGCTCAGCCAACATTTTTTGCACGTATTTTTCTTTTTTGTCACACAGCTGTTGATCATACAGCTCCAATAAGGAACATTAAAGAGAAAAAACAAGCCTGTGATATAGACTTTTACACTATACAATAAATGTAAATATGGACAAAAAAACTGTAGTCGCACTAAATATATAATTCAGATACTGATAACATTTAAAAACAAAATTAAATTCTAGCATACATTAATTTTAATAGGTCTAAAAAGGAACATATAAACACTATTTCTATATGTTATCAGAATTAAATGCCAGTTTGAATCATTATTATTGTTAATGCTCTTCCGCTGAGAACTGCAGGGTAAAAAGGGTCGTCCTGGAGATGACGGAAGTCCAGGCCCTAAAGGTCAAAAGG[T/C]CAGAGTTTTCTAAAACAACCATAAATAATTCAGAAATAATGTGTCCCCATCTAAAACGAGCCGTTTGTCCTGCAGGGAGAGGGCGGTTCGAGCGGTGCTCCTGGACGAGATGGGACAGAGGTGAAGCTGACCAGAAAGAGGCCTCAATTCACAAATGTTTGACATTGTATGATTGCTCTTTTTCAGCATGTGTGTGTTTTTTTGTAGGGGAAAACTGGATACAAAGGAGAAAAGGTAAAATTATACCATAAACTGAGAGATTTATAATTGGAAAACAAGTCAAACATGATTCTAGCATGAGGCTGAATTGCCAAATAATGTATGAAACTTTGAAATGTATGAAAAAATTATTATAAAATTGTCTACAAAATGCACAAGGGTCAAAGACTTGACTAAATTTAGAAATGTAATGAAATTATAAGTGATTTTTTACAGAGCAAGCACAGTATGTGCAAATACATTGTCTACTTTAAGCTTTAATGTATAAAATATTGGTGAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11556
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079675 Nonsense 701 806 22 24
ENSDART00000113637 None None 491 None 17
Genomic Location (Zv9):
Chromosome 6 (position 3482392)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 3510075
GRCz11 6 3670895
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTGAGAGAGGCAGAGGAGGCACGTTTGCTTCAACAGCTGGTCCAGACATT[A/T]AACAGGTTAGTGCAGACATGATTATGAAATGAGCYTTTGGTTTGTGTATT
Long Flanking Sequence:
AGAACATGCAAACTCCACACAGAAATACTAACTGATCCAATAGGGACTCGAACCAGCAACCTTCTTGCTGTGAGGCAACAGTGCTAACCACTAAACCATCGCGCCCATTATTATGTTTAAAAATGTTTTAAAATCTTTCTATCAAACAGCTCTTTGGAGATATTAATAAAATAATAATTAAAATTAATATAAATTTTGCCTTCAACTGTATTTCTCTAATAAATATCCTTCCTCTATTTTTAATCTCAGCTCTGGAGTCCAAACTAGTCAATCAGCTCTGCGAAGATGAAAGTAGAGCGCTTATCTTCAACCGCATTAATGATTTTGAAAACGGATATGGTCTGAACGGAAACCGCATCAATGGTAACGGCGGGCATAATTTCGACACCAGCACATATAAAGGCAGCAGAGAAAACACAGGAACACCGTCTGCCACCAACACCGTGATCACTGAGAGAGGCAGAGGAGGCACGTTTGCTTCAACAGCTGGTCCAGACATT[A/T]AACAGGTTAGTGCAGACATGATTATGAAATGAGCCTTTGGTTTGTGTATTGATTATGGTTTGTTTCATTAACATTTTGTCAGGAGGTTGAGCGTGTACCTAAAACACCAGACATAAGAGGAGCTCCTGCAGTCACTGGGACATCCACACCTAGCAAACCTTCATCAGGGACAACAACATCATCATCATCTGTGAACACATATTCAACTTCAATGCAGTTTATAGCAGCACCACGACCACCTTTACCTAAAGGTACAAACGAAACACACTCGCTAACTTACCGCAAAACATATTTTGAGTCTAGGATTTATTTTGTTGAAAGAAATTCATACTTTTATTTGACAGGGATCCATTAATTCAATCTAAAGTGACGGTAAAGAAAGGTATTGGGCCCTATCATACACCCGGCGCAATGTGGCGCAAGGCGCGGCGCAATACTCTTTTGCTACTTTTAGCTCGGCGCAAGGGTCATTTTGAGGTGTTGCGCCACGCTGTTTAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16583
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079675 Nonsense 783 806 24 24
ENSDART00000113637 None None 491 None 17
Genomic Location (Zv9):
Chromosome 6 (position 3485204)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 3512886
GRCz11 6 3673706
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGTAAGCTGCTCCTGGATCAGGGWCCTTGTCGAGAATATAACATYCGATG[G/A]TACTAYGTACCACAAGCCAACGCCTGTGCACAGTTCTGGTACGGTGGCTG
Long Flanking Sequence:
AACGTGGTAAAAATCAGGCAAGGGCCTTTTCTTTTCTTTTTTGGATTGCTTTTTTACAATTGTTGGTTGGGTTTAGCAAAGTGGCTGGGCGGGTCAATCCGTGCTTTTTAAAACACTATTGGTTGGGTTTAGGGAAGGAGGAGGGTGGATCAGTCGTCGCTCAGTCAGTCAACAGTGACCTCTGGTGGATTCACGAAAACAAAAACTGCAATAAAAAAAACAAACAAAAAAAAAAACGTACCTCCTGGGATGTATTTGGGGCTCTCCAGAAATGTATATAGGGGTGCATTTTCAGAATGAGCCTGCGTTGGACTGAAACTAATATCTTAAATTTCTTATTTGAATTTCACTGGACCTTCTAATAATTACATTAATAACATTTTAGTTGACTCTTGCTTAATATTTTATATTTTTTATCTGTGTTCAGAGGTTGTGCTTTTGGACCCCCTTTGTAAGCTGCTCCTGGATCAGGGTCCTTGTCGAGAATATAACATCCGATG[G/A]TACTATGTACCACAAGCCAACGCCTGTGCACAGTTCTGGTACGGTGGCTGTGAAGGAAACCGTAATCGCTTTGACACAGAAGAAGAGTGCAAGAAGACGTGTGTGGTCGTGTGAGCAGGTAAAACACACACCTGAAAACCTTTCGCTGGTAAATATTACTGCAAATGAAAAGGGACAGTAGTTTTTTCCTTTTGGTCACGGTTGTTTCTTTGCATCCAGGGGGCTGACATCCATTATGGACAAATTTACCTTTGTCTGTAATTCCTCATTCTCAACTTCAATGGACCTGCACTGAAATAAACAGATGTTAAATAAATTGACGTCTGCAAGAAACTAGTGGTCCTGCTTTATATTAAGTGGCCTTAACTACTATGTACTTATATGTAAATTAATCATGTAGTACAATACTTATTTGTAATAATATTAGTAAAATAAGAATATTAGTACAATACTTTTGTGTAATAACAATTGTGTAAAAACACTTTATTTAAAAGGCTTTT
Associated Phenotype:
Not determined