Busch Lab

ZMP

vps13d

Ensembl ID:
ENSDARG00000017986
ZFIN ID:
ZDB-GENE-050912-1
Human Orthologue:
VPS13D
Human Description:
vacuolar protein sorting 13 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:23595]
Mouse Orthologue:
Vps13d
Mouse Description:
vacuolar protein sorting 13 D (yeast) Gene [Source:MGI Symbol;Acc:MGI:2448530]

Alleles

There are 15 alleles of this gene:

Allele Name Consequence Status Availability
sa16971 Nonsense Available for shipment Available now
sa24315 Essential Splice Site Available for shipment Available now
sa24314 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa16971
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000046613 Nonsense 1530 4361 19 68
ENSDART00000145408 Nonsense 1525 2099 20 25
ENSDART00000148128 None None 2233 None 44
Genomic Location (Zv9):
Chromosome 23 (position 22048121)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 21827428
GRCz11 23 21753979
KASP Assay ID:
2261-7661.1 (used for ordering genotyping assays)
KASP Sequence:
AGAAAGTCCCTGWTGACGAAAACTCTACCTTTACCTTTTTGTCTTGTGAT[G/T]AACCTTACCAGAGCACAGGGATATTAAGAGTAGAAGGCAAATTTGTTAAC
Long Flanking Sequence:
AGAAAGCCTGGTCACCCTGAGCTGCTAGTTGGACATTTAGGGAGCATACAAATTCAGAACTTTGTTACAGGGCAAGACTCAGAAAGGGAGAAACTACAAGTTGAAGTAAAAGATATAAGACTTTATTCAGTGAACACAAGCAACTTGTTTTTAAAGAAAGGAGCAAGACTCAACAGCAGCACCACTTCCGGACCCTCACCTTCTCATGGTGGCAACATTAGTTTGAATGAGCCACAGTTTACACGACATGACTTCTTTGAGTACATTAGCAGAGGAAAAGGTAAGTTTTTTTGTTTGTTTTGTTTTGAGTTAAATTTTGGGAATTCACTAAACCTTATTTTATCCTTTATGTTTTAATATATGCTTTAAGGCATTTAAAACTGTTTCTATGTTTTCTTTGTTTTTCAGCATTTCACATTTTAAAAGATGCTACAATCCAGCTCACTGTCGAGAAAGTCCCTGTTGACGAAAACTCTACCTTTACCTTTTTGTCTTGTGAT[G/T]AACCTTACCAGAGCACAGGGATATTAAGAGTAGAAGGCAAATTTGTTAACGCTGTTCAGGTAAAGAACCACAAAATAGCACAACAGCTGAATATTTGTCATATACACAACTTTGATATTTAATTTGACATATTTTCCCTCAGGTATGTCTCTGCAAGCCTGTGTATGAACAGGTCCTTCAGACTCTCGATAATCTCTCCTTCACTGAAGATCAACGAGTAACCCCAAGTCAACCACCTACCCCACCACCTCCCACACCCTCCTCCACTAAACCACACAGATTCCCTGATCATCAAGGTGGGCTCTTTGCCCGAGACCCTCCTCATGGTGGAGTGTCTTATTCTACACTGTCATCATCTCTTTCAGCAACACTTCCACTGCATAATGAGAGCCCTCCTCTCCAGCCTCCTTCTTTTACCCAAGTGAGGGCCACCTTTCGAGTCTCTGAGCTGCAAGTGCAGTTAAGTGGAGACCTCAGCCAAGGATCTCAAGGGTTGGTTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24315
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000046613 Essential Splice Site 3317 4361 47 68
ENSDART00000145408 None None 2099 None 25
ENSDART00000148128 Essential Splice Site 1189 2233 23 44
Genomic Location (Zv9):
Chromosome 23 (position 22026609)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 21805916
GRCz11 23 21732467
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTTTGAGCCCATTGCTCTTCTGCTACACTGACAAAGAGCAGCCCAATATG[T/C]GAGTTCAAAAGAAAAGGCTCTCATCAGATGCTTTTGAAAATCTAACTTAA
Long Flanking Sequence:
TTTATACACTGATTAAAGGTTTAATTTGAATTTAGGACTTAAAGGGATAGTTAACCCAAAAAATGTAATTAACTCATCCTCAAGTGGTTTAAAACCTTTGTGTTTCTTTCTTCTGTCAATCACAAAAGAAGTTATTTTGAAGAAAGCTGAAAACCTGTAACTATTGACCTGCATATTATGAAAAACAAATACTATAGAAGTCAATGGTTACAGGTTTCCAACATTTTTCAAAATATCTTAGTTTGTGATTAACTTAAGAAAGAAACTAATAAAGGTTTGAAACAAACAAAGGGTGAGTAAATGATGACAGAACTTTCTCTTTAACCTGAACACACAAACACATCTGTAATATTTACATTATTGTGTGTCCAGGGCTGCCTCTGATTTTCCGTCAGGACAATGGAAAAACGGATGCCGCTGGACAGTTTGAAGAGCACGAGTTAGCCAGGAGTTTGAGCCCATTGCTCTTCTGCTACACTGACAAAGAGCAGCCCAATATG[T/C]GAGTTCAAAAGAAAAGGCTCTCATCAGATGCTTTTGAAAATCTAACTTAATGAGCCTGCATAATTTGCACCACCACAGTCATTAATTTATTACTCAACACAGCAGAAGTGTAATTTACCTACATAGCTACTGGAGTTCTCTAAAGTCTTGTCCTCTTTGATCAGGTGCACCATGCGGATCGGGAAAGGAATCCACCCAGATGGTGTTCCAGGATGGTGTCAGGGTTTCTCTCTGGATGGAGGGAGTGGAGTGAGAGCAGTCAAAGTCATCCAGCATGGCAACAGACCTGGACTTATCTATAATATTGGTAATAAGGAATGCATATTCTCTTTTAAGAAACCTTTCCCTTGCATTGTGGGATCTGCTAATTCAGACATCGTTCTGAAGATTACTAATGGATTGAAATGTCTCATTGTAGGAATAAATGTGCGAAAAGGGAAAGGGCGCTATCGTGACACACATATTGTGACTTTTGCTCCACGATACCTGCTTGACAATCG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24314
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000046613 Nonsense 3909 4361 60 68
ENSDART00000145408 None None 2099 None 25
ENSDART00000148128 Nonsense 1781 2233 36 44
Genomic Location (Zv9):
Chromosome 23 (position 22016470)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 21795777
GRCz11 23 21722328
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTGATCATAGATGTTGCACTCTGATTCACAGCATCTGATGGTCACAGCT[C/T]GACGCTACACTGTAATCATAGAGGAGAAGCTCTTAATGAAACTGCTGATA
Long Flanking Sequence:
GATTAGGGATAGTTCAAGATGGTTTACCGAACTGTGATGTTGACTAGTTTTTCTAGATTTGTCAATGTACTTGGGACATCAAAGTTTAATCCAATAGTCAGGGATCAGATCTGGCAAAGATCCCTTTTTAGCTCATTCGTTTTCTTTTCCAACAAAATTTTCAGTCTCAAGCTAATGCATTTCTGACAGATTTGTTTCTTTTCTCTCGTCTTTCCCAGGTGGACAACCAGCTTCTGGGCACCACTCACCCTGTGCTACTATGTGTGACTCCAGGCTCCTCTGAAAGTACTGCATTGGATTCAGGTCCTGCTCTGCAGGTCAACGCTGTGAAAGTGCCCAGCAGGCTTATGCTCACAGACCTCTTTAAGGTGAAACTGATCAACCTACAGGTTCTCTTTCTGACCAGAAATGCTTCAGGCCTGTTTGTACGTGTGCCTTTAGCTACAAAAGCTTGATCATAGATGTTGCACTCTGATTCACAGCATCTGATGGTCACAGCT[C/T]GACGCTACACTGTAATCATAGAGGAGAAGCTCTTAATGAAACTGCTGATATTCTTTGGCTACGGTCAGACAGAGGGAGGTGTGTAATGTTTATCCCTCTAGAGTGCAGTATAGAAAATGACACTATTATCTCCTGCTGTAAAGTGCATGCTTTTGTGTTACAGAGATGGAGAAGCTGGATGAGAACATCTATGAGAAAGCCAGTGAAGATCCAGGAACACCAAAGCGCTATTATTTTGAGAACTTGAAAATCAGTCTCCCTCAGGTCAAGCTTAGTGTGTTCACCTCTCACAAGCTGCCCCATGACCTTAAGGTAAAAGAGCCACTGTAGAATCGACCACAGTATTTTCAAGCTTGCATTATGTTATGATTTGGCTACTCGCTGTATAGTCAAGTGTTGTTTTGCACAGGCCTTGAAGGGAACCCTTGGCTTCCCACTCATTCGGTTTGAAGATGCAATCATCAACATGTACCCCTACACTCGAGTTCATCCCTATGAGA
Associated Phenotype:
Not determined