ZMP
ccdc40
Ensembl ID:
ZFIN ID:
Description:
Novel protein [Source:UniProtKB/TrEMBL;Acc:B0S566]
Human Orthologue:
CCDC40
Human Description:
coiled-coil domain containing 40 [Source:HGNC Symbol;Acc:26090]
Mouse Orthologue:
Ccdc40
Mouse Description:
coiled-coil domain containing 40 Gene [Source:MGI Symbol;Acc:MGI:2443893]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa8996 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa13373 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa8996
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000002617 | Nonsense | 314 | 941 | 8 | 19 |
| ENSDART00000140156 | None | None | 101 | None | 3 |
| ENSDART00000145154 | None | None | 261 | None | 5 |
Genomic Location (Zv9):
Chromosome 6 (position 19639851)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 21799220 |
| GRCz11 | 6 | 18270541 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCAGCCTCTTAATGATGAAGAGGAGGGATGAGGCTTACACTGCCATGCAA[G/T]AGGAACTAAGGTAAACATAATGCTCATGATATCTGTGTGAATGACTCAGA
Long Flanking Sequence:
TTTTGTTTAAGCTAGATAAAATGTCATCATTGAAAGAATAACCACAAATTTCTTAAATACATAATAGAGGAATAGTTTGATAAGGAAGTACATTAAAATGCAAAAGAAGTATATCATGTTCAACTATTCTATTCTTTTTTTTTTAAATTTTTTTGAAATACAACTTTGATTAGAAGTTTTTTTATGGTTGATTTTAAAGCTGAATTTTATTCAGTGTCACATTGTATAAATAAAATGCTGCATATTTATTTGCCATCTATGCTCAAATTTACTTAGATGGAATTTCAAAATCCTTCTAAATTCAGTTCTAAATATTACATTATCCTGCAAGTCATATGCTACAAAAAAAATAATAATAATTTAAATAAGCCTGTGTACATGTATCATAGGCACAGCTGGAACTGGACTCGGTGATTGTTGAGCATAGACAGTTACTTCAGCAATGGAAAAGCAGCCTCTTAATGATGAAGAGGAGGGATGAGGCTTACACTGCCATGCAA[G/T]AGGAACTAAGGTAAACATAATGCTCATGATATCTGTGTGAATGACTCAGACAACAGTATTTATGTGTATTGATGGCCCCTCCTCCAGACAAGCCAATGATCAGATGCTCTCCCTGGACACAGAGATTGAGAGCTATAAAAAGTCCATCACACAAGAAGAAGAACAGAATGAATGCCTCACTTTGCGTCTGAACCGAGGCCAGACTGATTGCACCACTTCACGTAAACTCATCACACACTCCCAGAACCTTCAGGAAGTCCTGCAGGCCCAGTTAAGCACGTATACACGAATATTGCAGGAGACAGAGAACACCCTTAGCACGTTGCATGGGGTACTTAATTCACATCAGTCTATGGCAGAGATATTTTACCTGACTTATGTTTCCTGGTTAATGAGTAGTGGTCTGATGCCTGAATATGTGATATGTTTTTATTTCTCTCCCATTAAGAACCTTGAGATGCATCAGTCTGCGCTTAAGGCTCTTAGGAAGCAGATGGAGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa13373
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000002617 | Nonsense | 427 | 941 | 10 | 19 |
| ENSDART00000140156 | None | None | 101 | None | 3 |
| ENSDART00000145154 | None | None | 261 | None | 5 |
Genomic Location (Zv9):
Chromosome 6 (position 19639318)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 21799753 |
| GRCz11 | 6 | 18271074 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTAGGAAGCAGATGGAGAAAGTGTCWGCAGTGCGTTTGGACCYAGAAAGC[C/T]AGATCATGAACAAATTGCAGGAGCAGCTTACTCACAATAATGCAGCAAAA
Long Flanking Sequence:
CTGTGTGAATGACTCAGACAACAGTATTTATGTGTATTGATGGCCCCTCCTCCAGACAAGCCAATGATCAGATGCTCTCCCTGGACACAGAGATTGAGAGCTATAAAAAGTCCATCACACAAGAAGAAGAACAGAATGAATGCCTCACTTTGCGTCTGAACCGAGGCCAGACTGATTGCACCACTTCACGTAAACTCATCACACACTCCCAGAACCTTCAGGAAGTCCTGCAGGCCCAGTTAAGCACGTATACACGAATATTGCAGGAGACAGAGAACACCCTTAGCACGTTGCATGGGGTACTTAATTCACATCAGTCTATGGCAGAGATATTTTACCTGACTTATGTTTCCTGGTTAATGAGTAGTGGTCTGATGCCTGAATATGTGATATGTTTTTATTTCTCTCCCATTAAGAACCTTGAGATGCATCAGTCTGCGCTTAAGGCTCTTAGGAAGCAGATGGAGAAAGTGTCTGCAGTGCGTTTGGACCTAGAAAGC[C/T]AGATCATGAACAAATTGCAGGAGCAGCTTACTCACAATAATGCAGCAAAATACTCACGTAGAATGAATGATAAAACTGCAGTTTACAGGAGAGAGAAGGTAGGATGCCATCAGCTAACCTAGAAATGCTGACTTATGAATCTCACTGTTATTTGAATAATTTTTATTCATTTTATGCATTTGCTCAATATCACCAAACTTAAATGTGCTGAAAGTGTTTGTGGATGAATAACAGGGTAGCCAGGTCATATTTCATGTCAATATCTAAAGAAAAATATTAGATGTTATAGATTTTATGTTTGTTGCCTCACAGCAAAAAATGAAAGAGTGTATGGTGTTTCCCGGCAGCACGGTGGCTCAGTAGTTTGCATTGTCACCTCACAACAAGAAGGTCGCTGGTTCAAGTCCTGGGCCGGGCCAGTTATCATTTGTGGAGCTTGCGTTTTCTTCCCATGTTCTCATGGGTTTCCTCTGAGTGCTCTGGTTTTTCCTCACAGTCCA
Associated Phenotype:
Not determined