ZMP
col11a1a
Ensembl ID:
ZFIN IDs:
Description:
collagen, type XI, alpha 1 [Source:RefSeq peptide;Acc:NP_001077313]
Human Orthologue:
COL11A1
Human Description:
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Mouse Orthologue:
Col11a1
Mouse Description:
collagen, type XI, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88446]
Alleles
There are 9 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa13850 | Nonsense | Available for shipment | Available now |
sa8893 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa32491 | Essential Splice Site | Available for shipment | Available now |
sa44162 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa24520 | Essential Splice Site | Available for shipment | Available now |
sa39459 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa11965 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa13850
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | None | None | 231 | 2 | 67 |
ENSDART00000042065 | Nonsense | 78 | 1736 | 2 | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29808990)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28807306 |
GRCz11 | 24 | 28886465 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CKTCAGGATTCTGCACAAACCGAAGAGCATCACAGCCAGACGCGGCCTAC[A/T]AAATCAGCAAGAATGCCCAGCTCAGTGCCCCGACCAAGCAGCTTTTCCCA
Long Flanking Sequence:
AGGGAAGGCTAAACTGTCCGTGGTGTATGTGTGTGAATGAGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGAATCCACTGTTTAAAACATATTTTGGAGTAGTTGGCGGTTCATTCCGCTGTGGCGACTGCTGATAAATAAAGACTAAGCTGAAGGAAAATGAATGAATGAATGAATAATATAATTCATTCCAATGTTTTTTTTTTTTTTTTTTTTTTGTTATTGTAAGTGTGGATGTTAGAATGTCATTCTGTTGAAGCTGAAGTTAACTGCAATATAATAACGTTAATCATTTGCTAAACATTTGTAAATAACAATATTTCTAATGTATTTCCCACTATTATTTATCTGCTGACATTTTGCATGTCTTTTCTACTCTGTTCAGCAGAACCCGTGGATGTCTTAAAAGTATTAGAATTTCCCACTGTCCCAGAAGGAGTAGAGAAAACGTCAGGATTCTGCACAAACCGAAGAGCATCACAGCCAGACGCGGCCTAC[A/T]AAATCAGCAAGAATGCCCAGCTCAGTGCCCCGACCAAGCAGCTTTTCCCAGGTAAGCTGAACCCCACGAACATGTCTCCATATCCTGCCTACGTTCAGCTGCGTTTAAATGTGCCCTTTGTTACGGTTGCCAAGGCTTTTGACAGGAGATGCCATCCCTGATTGTGCGGGGCCATGTTTCACTCAGACGCTTGTATTGTTAAGCGCTCGGAGAACTTGGCTGAAATCTCTTGACCGCAGCATGGCTCGTCTGCTTAGTTGCATAAGAAATGAACAAATGGTTTTAAAGAGAAAGTTCACCCACAAATAAAATAATCACCCTTATGACTTCTTTCGTTAGGGAAATGCAAAAAAAAAGATGTTTAGCAGAATGTTCATGCTGCACTTTTATGTGCAAAAAACAACTAATGACCATTCATACAAATGTAGCATTCAGCTTGTGCATTACATTCCCAGTTATCTGAATGTATCTGATACCTTCAAGATGCATGATGCCAGGGG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa8893
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | Essential Splice Site | None | 231 | None | 67 |
ENSDART00000042065 | Essential Splice Site | 262 | 1736 | None | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29779598)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28777914 |
GRCz11 | 24 | 28857073 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGACGTCCCTCACAAGGACACACTGCAGGCACAGGAGCCCGGAGAGGAGG[T/G]CAGTAWATAGACCATGAGCCTTTTGGACTAGCTGACAGAGGAAATAGCAT
Long Flanking Sequence:
AACATGTGCTCTTTGTAGATGTGTGCATGTTTAACATGTTGTTGACCTGAAGGTTTTATGTACTGTTGCCCAACCATTGTTAGGCACATTTTATACGAGAGCAGACTTCCTTTGTGGGTTTCTGTTCCCAAGGTGTTTCGTGATGAAACATGTTTTATTTACCTGCTTATAAAGCAGCAATTTCCTGAACCTGTGTTTCTCATTGAGAAAGTTGTTGATGATTTGTTGTTTTGTTCCAACCCTGCCTTCCAGTCCTTATTTTTCTACAATGCACAGTCAATTTGATCGATTAATGTTTAATTTGTGTTAATGTTTCAGTAGTAATATTTCAGCACATGTATCTCATGTATTGCTCTGTTTTTGGTCTCCTCAGGGTGATATACAACAACTGCTGATTGTGGCTGACCCTAAAGCAGCTTACGACTACTGTGAACATTACAGCCCAGACTGTGACGTCCCTCACAAGGACACACTGCAGGCACAGGAGCCCGGAGAGGAGG[T/G]CAGTATATAGACCATGAGCCTTTTGGACTAGCTGACAGAGGAAATAGCATTTCCTTCAGTACTCAGAAGACTAAACGCTTCTGGACGTCTGACATGCTGTCGATACTTTTGACACCTACAGTCAAATGACTGGACGGACAGACTCATACTTTATTGTTGTTTTTCCACATGTTAGAATAATTGAAATAATATTATAGAATAAACTTTGAAAAACACAAACAAAAAGTGAAATATTACTGAAGTGCATGAATTATGTTGTAGCCAATAATATTACAGATAAAACTATATTGTTTTGAATGAAAAGCTTTCAAATGCATTTGTTATTAGTAGTATTGCTTTACTTGACAGATACTTTAATAGCATGTTTTCTTCATTTATTAGTATTATTAATAGTAGAACTCATCATAGTAGAAGATTTATAAACACACAAAATATTTTTAGAACTTGATGAGTGGCGAACAAATAAATTGAGATTTATTTTTGTGATTTTTAATTTATTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa32491
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | Essential Splice Site | None | 231 | 8 | 67 |
ENSDART00000042065 | None | None | 1736 | None | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29771915)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28770231 |
GRCz11 | 24 | 28849390 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCCCTCCATTGCTCAAACTCCCTTCCGCCGCATTGCTTTGGGTGTAATA[A/C]GGCCATGGAAGAGGAGAATTTTGGTGATTATATCACCGAGACGGCCCAGG
Long Flanking Sequence:
TTTATTTTATTTTATTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTATCCAAAAAACTAAACTCGAGAAAGCTTGTCCATTTGCTTATAAAGTAATTATAGTTTATACTGAGCTAAAAAATACCTTGTGGCTTTATGTTTAAACATTTTAAGCCATTAAATCTCCATTACTATTTCCTATTGCTGTAAATTGTACAATGTGATTTACTTAACCAAATTTAATTAACGCCTTACACTCTCTTAATCCACCTATGAATCAATGCAATTCGAATCACTTCAATGGGACAAAGAAGTGTTACCTTGTTGCCAGCCAAAATCGATGGCCATTAATCATGCAATTCATTTTGCTCTTGCTTTGCTTTAGATACAGTAGTAATTGCTTTAACTGCTAAAACTAACATCCATCTTCCCTCCATTGCTCAAACTCCCTTCCGCCGCATTGCTTTGGGTGTAATA[A/C]GGCCATGGAAGAGGAGAATTTTGGTGATTATATCACCGAGACGGCCCAGGCTGGTCTGGATCCGACCGCTGCCTCAGAAGCTGTGCTGCCCAGTGGCACCGCTGACCCCATCGGAGTGGACTCGTATGACTTTAAGGAGTATGATCTTAAGGAATATGATGTGACTGGGCTTGACAAAAATCAGTATGAGTATGGGCCTTATGATGAGTTTGGCAATGTGGCTCCAAACCCAACATCCAATTACGAGGACACTTTTGGGCCTGGGGTTGCGGCCGAAACCGACATCGCTGAAACAGACGTAAGTATTGAGCCCTGAAATGAGCGTGTCGTCCAAGCACTGGGATTGTTGGATATGGAAATCTAGCATGTGTTGTTGACTCTACAGTGTACTATTCTGCATGGGGTCTGTCCGTTTTATTCTCTCCTCTAGAATGCATTTCTTCTCTTTTATCCACATTAGTGTACTCTTTCTTTCGTCTCCATCACACTGATTCACAGAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44162
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | None | None | 231 | 10 | 67 |
ENSDART00000042065 | Nonsense | 375 | 1736 | 9 | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29770174)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28768490 |
GRCz11 | 24 | 28847649 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTAATTGTGATTTTGGTGTGATTCAAAGGGAATGCTGATCGAGGGACCTT[C/A]AGGACCACCTGGACCTGCTGTAAGCAACTAGCATATTTACCTGCATCAGT
Long Flanking Sequence:
TCTATCTATCTATCTATTTGTCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCACCCACCCACCCACCCACCCACCCACCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCTGTCTGTCTGTCTGTCTGTCTGACCTGTATTGTGTGTTTTCAGCTGGGTGGAGGTGCTGCTCTTGGTCAGAAAGGTGAGAAAGGAGAGCCTGCAGTGATTGAACCAGTGAGTAAAAAGTGAATTTCTTATATGCATCAACATGGGGACGATATTAATCTGAGTTTATTACATAATTTGATCATGCAATCTGTCAGTAATTGTGATTTTGGTGTGATTCAAAGGGAATGCTGATCGAGGGACCTT[C/A]AGGACCACCTGGACCTGCTGTAAGCAACTAGCATATTTACCTGCATCAGTTTTACTGTAACATTCAGTTTTCAACCCATGTGCTCTGACCAGAAAAAAAAATCACTAAGGTCTAATCTTTTGTTATTTGGCTTATCTTTACGCTCAAACCTATGTTTGTTTGTGCTGTCTTTGTCTTTAGGGTCTTCCAGGTCCTCCAGGTTTACAAGGCCCCCCTGGTTTGGCTGGAGATCCTGGTGATAGGGTAGGACTTTTTTTTCCCTCTCTGACTTTATGCTTTATTAATATCCGATTGAGTGGTTTCAGGACATTGACATGTTTAGTTGAGATTCAGGTCTTCATCTTCTGTCATATTTCAGCTTTAGTTTGTAGAAAGTGAATTTGTTATTGTCAGGGTTAAAATATTAATCAAAAAAACTTGAGTCTGAGAAAACTGTCAGTCCTGAGAAATCCTTGCATTCTGGAAGCTTAGAAAAGGCATAGATGGCTGTTGTAAACAGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa24520
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | Essential Splice Site | None | 231 | None | 67 |
ENSDART00000042065 | Essential Splice Site | 528 | 1736 | None | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29759750)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28758066 |
GRCz11 | 24 | 28837225 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCTGGAGCTGATGGTGCCCGAGGAATGCCTGGAGAGTCTGGATCTAAGG[T/A]ATGGAAAATGTTTATTTGACCTTTTCATGCTCACATATAAGTTATGCTGT
Long Flanking Sequence:
TACACCAAGATAATGGGGACATTACCTATGTCTGCCAGAAAAGGAGAAATTGACTCAAAATCAGTCTGATTATCTTGTGGTGTGTGTCCTGTTCTTCCCCATGAGCGTTTGAGTGTATGGTTAAAAACTAGCTTAGAGGGTTATCTGCTGTCAAAAACAAAGCCCAGCATCTTATCAAGAGTGAATAGAGATGCAGTTAGAAAATCTCAGAATAGATTTAGAATTGATATCTTGAACATTTTTCCCCCCTCAGCTCTAATGTTAGCCTATCCACGGAAGCATATGTAAAAGAGAGCTCAGAATTTGCCCACTAAAAGAAAGATGGCATTGTTTCAGATATATTTTATTATCAAAACATTACCTAAATATGAATACTTTTGACAACAATAGTTTGGTCACATAATAGTTCTCAAAAATAGTATAATGCCTGATTGATGTGTGACAGGGTCGTGCTGGAGCTGATGGTGCCCGAGGAATGCCTGGAGAGTCTGGATCTAAGG[T/A]ATGGAAAATGTTTATTTGACCTTTTCATGCTCACATATAAGTTATGCTGTACTGCTTAACATATTGCTTGATTATCTTACTTGGTCATCTTCAAAGGGTGACAGAGGTTTCGATGGGCTTCCGGGTCTGCCTGGTGAGAAAGGACACAGGGTGAGTAAACAATTGCAAGTAGATGCAAGTTGGTGATAATTAATTAGTTTTTGCTGAAGACACAAAGTATTGAGTGATTTAATTTGGCACAGCAAACAATAAAGAAACTCAATCTAATAAGGAATTTAGTTATTAAATGTCTAAATATATTAAAAGGAATTTGCATAAAGACACTACAATATATGTATGTTCTTAAACAGGGGTTTTCAACCTTTTATATGATTTCAGATGATCCTAATTTCTAAATTGTTTTCAGGCACAATCCTTGTATGAGTTTAGAAAGAAAATGTGTTCTTATTTATTTGTATTGTTACTACTAATGCGTTGACTATTATTTATTCCTCCAAATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa39459
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | Essential Splice Site | None | 231 | None | 67 |
ENSDART00000042065 | Essential Splice Site | 579 | 1736 | None | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29757764)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28756080 |
GRCz11 | 24 | 28835239 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAGGGAGAAGATGGTGAGATCGGACCAAGAGGACTTGCTGGTGAGAGCG[T/C]AAGTGTGTCTTGCATTGACTAAATGCTTTATTTCTTGTTGGCCACCAGGG
Long Flanking Sequence:
CATTCAAATTGATTCATGAAAATGGTAAAAAATTTGCAAGGAAGTTACAGGATTAGTTACAAGGAGGTAAAACTTGCAGCATTTAGAAATTATGCTCTTCATTGTAGTAATATATAATACATTATAAATCCGAGAAGAATAATGAGCTCTTCAAAGGTGAAATTATTCATTAAAAGTCAGATATTTCCTTTCGGTTCCCATGTCAACACAGGTAATAATTACAGGATTCAAAATTACTCCGTAGATCAGAGATATAAAGCAAGGATTTTATATTAAGTCGAATGTAATAAAGAATGATGCTTCCTCTCTTTTTTGAAAGGGTGAGACCGGCCCTGCTGGACCCCCGGGACCAACTGGAGAGGATGGACCAAGAGTAAATTTTTTTTTCATTCACCTTCTCTCAATATATTGGTTCACTCACTAGAAAAAAAAGTAACTTCTTTCTTCTTTACAGGGAGAAGATGGTGAGATCGGACCAAGAGGACTTGCTGGTGAGAGCG[T/C]AAGTGTGTCTTGCATTGACTAAATGCTTTATTTCTTGTTGGCCACCAGGGGGCAGAATCTCCCAAAAGCCTATTAGTATTCCTATTAAAATTCAGATAAGAGAACTTGCACATTTTAATCAAAGCCTTTTTATCTCAGGGGCCGCGAGGTCTTCTCGGCCCAAGAGGCCCTCCTGGACCTCCTGGACAACCTGTGAGTGTGTTTTTAATGTGTAATCTGCAAATCTGAAGCTGATTGCTCTCTTCTAATCTTGCGCAATTGATTTCTGCAGGGCATTGCTGGTGTTGATGGTCCGCAGGGTCCCAAAGGAAACATGGTAAGAGACATGGATCTCTAAAACATGGCATTTTGTAGATAAAGTCATGCTGATAATACTTGTTGAGTCAATCACCGTGGGTTCTGCACATATTTGTTCAATACCAATATAAAGCTGTATAATGGGAGGTTTAAGGTGAGACCCTAAAGGCAAGAAAGATTTTTCATGCATCTGACATTTTAGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11965
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000003503 | Essential Splice Site | None | 231 | None | 67 |
ENSDART00000042065 | Essential Splice Site | 1258 | 1736 | None | 66 |
Genomic Location (Zv9):
Chromosome 24 (position 29717060)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 24 | 28715376 |
GRCz11 | 24 | 28794535 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AATTGTCAAGTTNNNNNNNNNNNNNNNNNCTGTNNNNATCTAAAATCCTC[A/T]GGGAATAGATGGAGGCCCAGGAGAGAAGGGAGAGGATGGAGAGTCTGGTC
Long Flanking Sequence:
GGGTGCTCCGGTTTCCCCAACAGTCCAAAGACATGCACTATAGATAAATAGCCAAATTGAATAAACTAAATTGGTTGTATGTGTATGAATGTGAGAGTGTATGGGCATTTCACAGTACTGGGTTGCGGCTGGAAGGGCATCCACTGCATAATACATATGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCTGATAGATAAAGGGACCAAGCTGAAGAAAAATGAATGAATGCATGAAGATGCCAGTCTGTTAAATTGTGTGTTCAATCTTTTTTTCTATAGGGCCCTGTTGGTTTTCCTGGAGACCCAGGTCCACCTGGTGAGCCAGGTGTTGCTGTAAGTGCCGAAATCCATCAATTAAACAACTGTAACTTACTTTTCTATAAATAACTTTTCCATGTACAAACACCTTGTAACTAGATAAAGACATTTGCTTATTTTGTCAATTGTCAAGTTATTTGCCTCTAAAATATCTGTTTGTATCTAAAATCCTC[A/T]GGGAATAGATGGAGGCCCAGGAGAGAAGGGAGAGGATGGAGAGTCTGGTCAGCCTGTGAGTATTAACAGCATTTCGAGGCCATGCTTTTGACTACAGTTTATAATTTCCTGCGCTATGCATACTTAGTCATTTAATTCAGGCAACAATTAACTAAAATATAACTATTTAAATTGTTTATTTGCCATTGCATAAGTATATGTACATGCACAGTGCAGAAAGATTAATAAATGGTGATTGGATATAGGGAAGTCAAATATAATTGACTGAGCCTACAGTGGCAGCTCATAAATTGCAGTCCTTATTAACATTTATTATAGTAATTTGAATTTTCCACTGCAGGGAAATTGGTTAATTTACCATTAAATTCAGTGTATCGGAACTCCAGGTTTGCAAATGTGAACATCTAGCATTGGGAGTCTCTCTGCAAGGCCCATTGATAAGCTACAACTCTCCATGAAAGTTTAATGAGGGGAGATTTGTTTACAGCAGCAAACTTTCA
Associated Phenotype:
Not determined