ZMP
sycp1
Ensembl ID:
ZFIN IDs:
Description:
synaptonemal complex protein 1 [Source:RefSeq peptide;Acc:NP_001112366]
Human Orthologue:
SYCP1
Human Description:
synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:11487]
Mouse Orthologue:
Sycp1
Mouse Description:
synaptonemal complex protein 1 Gene [Source:MGI Symbol;Acc:MGI:105931]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa8777 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa7330 | Essential Splice Site, Missense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa8777
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000011876 | Nonsense | 87 | 1000 | 5 | 32 |
| ENSDART00000124524 | Nonsense | 87 | 479 | 5 | 18 |
| ENSDART00000127045 | Nonsense | 101 | 946 | 5 | 31 |
Genomic Location (Zv9):
Chromosome 6 (position 48994334)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 49055081 |
| GRCz11 | 6 | 49053734 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACTGTNAATTACCAAGGAGCTTTTTGTTGTTGTTGCATTGTAGACGTCTT[T/A]AAGATCTAGCCAGCTGTACTCCAAACWGCTCGAWGAAGCTGAGAAAAKCA
Long Flanking Sequence:
ACGTTATTTGACCTCTGGCTGCTAAAACTACTGTGTGAGCGTTTAATTGTTGGATGATGCCAGTATTTTTATTTGTAGAGTTATAGTAAGTGTTCAGATATGGAGACGAGCCTGCCATTTCCATCCAAAATGGTGCTTCCTACTAAGTCACCAAGGGCTGGTAAGGTTTAAATAAATTCAAAGGTGTATTGTAATAAATAGTTGGCTTTATGTGAATGTCATTCTTAAAAGCAACATTGGACGTACATTATTCATATTCCTTTATTCTTCAAGAGGGTATGAAGAAGGCTGCAGTCTTGCCAATGGAAAAGGAAGAGGTCTGATTTAATTCTTATTTAATTTTGTATTGAAGTGTATTGCTTAAAAGGTGAATTAAACATTCATTTTATGTTTTACAATGGTTTAAGGCCTGTGTTGTAAATTCATTGCATAATAGAAATATATCAAAGTACTGTAAATTACCAAGGAGCTTTTTGTTGTTGTTGCATTGTAGACGTCTT[T/A]AAGATCTAGCCAGCTGTACTCCAAACTGCTCGATGAAGCTGAGAAAATCAAACTCTGGAAGTTCAGAACCGATTCAGATATTTCACAAAAAGACAGAAAAATTCAGGAGAACAGAAAAACCATAGAGACACAGCGCAAAGCTATTCAGGAGCTGCAGGTAAATTTCATCAGCAAATACAAGTACATTACATGCATTTGTTTTTGCCTGCCTTATACTGAAGAACGAATACTTAATTTATCATGTATGTCCTTTGCAGTTCGCAAATGAAAGTCTAAGCATTAAATTAGAGGATCAACTCAATGAGAATGAAGACCTTAGAAATAAGTATGTACATCTCCTTTGTTAAAATCTATATTACATTTTGTATACTATTGTTTTTATCATGATTATTTTTATTATGCAGAACTAATGCAACCAGAAATTTGTGTAACATACTAAAGGACACATTTGAGAGAACTGCTGAGAAAATGAATTTTTGTAAGTGTGACAGAACATTATA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa7330
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Essential Splice Site, Missense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000011876 | Missense | 806 | 1000 | 27 | 32 |
| ENSDART00000124524 | None | None | 479 | None | 18 |
| ENSDART00000127045 | Essential Splice Site | 761 | 946 | 25 | 31 |
Genomic Location (Zv9):
Chromosome 6 (position 49000308)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 49061055 |
| GRCz11 | 6 | 49059708 |
KASP Assay ID:
554-5445.1 (used for ordering genotyping assays)
KASP Sequence:
GAGAACAACTTGAAAAGCTAAAAGCAGAAAAGGTGGTCCTGAAGACACCA[G/T]TGTCACGTTGTGAAAAAGACACACTTCAGCAGGTATCAAAWCTTGTCAGT
Long Flanking Sequence:
GTATTTATTTGAACTTTTTATGGCCTAACTTAACAACTTGCAATTTAATTTGGTAATCAGAATTCAATTATGAAATATTATTCATAAATCCACATTGTTTTTGTGGCGGTCAAATAAAGTCTGCATAACAGGACTTAGATTCTTTAGTTCAGGGGTGCCCAAACTCCGACCTGTAGGGACGGTGTCCTGCATATTTTAGTTTCAACCCCAATTAAACACGCATAAACCAGCTAATCAAGCTTTTTCTAGCTATACTAGAAACTTCCAGATTGTGTTCAAGGAAGTTGGAGCTAAACTATGCAGGACACCGGCCTTTTAGGTTGGAGTTTGGACACCCCTGCTTTAGTGGTATAATAAAGAGTTTTGGGATTGAAAATATAACTGCTAATAAATGCCTCTAAATTTAGGAACTGGAGCTGTCCCACTTGCAAGTGGAGAATGATGAGCTGAGAGAACAACTTGAAAAGCTAAAAGCAGAAAAGGTGGTCCTGAAGACACCA[G/T]TGTCACGTTGTGAAAAAGACACACTTCAGCAGGTATCAAATCTTGTCAGTTGAAATACCAAATGTGTACATGGCAATTGAAAGAGAACAGTGAAATATAAAAATCTTGTTTTAGATAACTGACAACAAAGCAAAGAAAGGTAGAAACAAAATGTCCAAAACACCTAAAGCTAGCTGCACGAAGAGGAATGTTTACAATCTTTTAAATGATGAAGAAAATGAATCTCCAACAAGCAATGCATCTTGCACTCCTGCTGTAGGTTTCATTCCATTATCATTTTGTATGTTCATATTATTCACATCTACCATCTAACAGTTTCTTTGTTTTATTATTGATGTAAGCGAGAAGTGCAGGAAGTCCTTCATAACCCATTATGGACCCGGAGCAAAGCAACTGGAACAACGCCTCAAATAAAGGTATGGTGCAGCCTGAACAGTTTACGCTAGTCATCATTCATCTTAGGCGTTTATATGAGCCAGTCTATTTTCTGCTTCAGTCAT
Associated Phenotype:
Not determined