ZMP
cxcr3.2
Ensembl ID:
ZFIN ID:
Description:
C-X-C chemokine receptor type 5 [Source:RefSeq peptide;Acc:NP_001007315]
Human Orthologue:
CXCR5
Human Description:
chemokine (C-X-C motif) receptor 5 [Source:HGNC Symbol;Acc:1060]
Mouse Orthologue:
Cxcr5
Mouse Description:
chemochine (C-X-C motif) receptor 5 Gene [Source:MGI Symbol;Acc:MGI:103567]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa5887 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa253 | Nonsense | Confirmed mutation in F2 line | Not yet available |
| sa8709 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa5887
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000060137 | Essential Splice Site | 12 | 378 | 2 | 3 |
| ENSDART00000145727 | Essential Splice Site | 12 | 219 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 16 (position 13569805)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 11928896 |
| GRCz11 | 16 | 11819798 |
KASP Assay ID:
554-3896.1 (used for ordering genotyping assays)
KASP Sequence:
TCTGAAGCTCATCATGGACAACTCAACAACAGCCRCAGAGGTCTCAGCGG[T/C]GAGTTTTAGTTGCCATTAAACTAATACTTTTAAGGGTCCCACTTTATATT
Long Flanking Sequence:
TACACAATAAACATTTGATGTTTTACTATAACTTTTTTACAAACTTTTAGATTTACCAATCTGTCTCAACCTCTTAGAGCTTTCAAAATGTCAAGATGTCTTCGATAAAAACTAATTAATTCAACAAACTTGTAGAAAGAAAAAAAATGTCTGCACTCAACAAATTAAGGATGTTAATTTTACTGTCTGTTTGTTTTTAATCAAAGGAATGCAGATTTTAGTTTTTCCTGCTCATGCAGCTTTCAGTTCCACATTTTAGGCTTTTGTTGTAGCTTGACAACGTGGGATTCAGTTTCTGTGGTCTAACGTTTCACTCTTTGTCCCTCTATTTTTTTCTTTTTGTGTGTGTTAATTGTCCAATAGAAAGAAGAGACATATAGACAAGATAGCTTGAGAGACGAGACGTGCCTAACATCTCGTGCCCACTATTTTATTTGTATGTCTCACTTCTCTGAAGCTCATCATGGACAACTCAACAACAGCCGCAGAGGTCTCAGCGG[T/C]GAGTTTTAGTTGCCATTAAACTAATACTTTTAAGGGTCCCACTTTATATTAAGTGTCCCTAACTACTATGTACTTACATAAAAAAAATAAATACAATGTACTTACTGTGTTTATAATGTATTTGAGAACACTTGTGGTGCTCTTGAGTTGGGATAGAGGTTGGGTTATGGACAGGTTTGGTGGTATGGGTAGGTTAAGGGTGGGTTAAGGTGTAAGGGATGGTCAACAGTGTATTTACAAATGTAATTACAAAAGTTATTTACAGATGTAATTACATACATGTATTTAATCAAGCATAAGTACACAGTAAATACATGTATTTACACAATAAGTACATTGTAACAAACTATTAATTCCTTGGTAAGAACATATTAGTTAAGGCCACTTAATATAAAGTGGGACCCTTTTAAGGGATCATTTACCTGAAATTCATTTACTCATTTTCAGACCATGTTAGATAGATGACATTTTTCTTTAGTAAATAATTAAAGTAGAAACTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa253
Status:
Confirmed mutation in F2 line
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000060137 | Nonsense | 75 | 378 | 3 | 3 |
| ENSDART00000145727 | Nonsense | 75 | 219 | 3 | 3 |
Genomic Location (Zv9):
Chromosome 16 (position 13573797)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 11932888 |
| GRCz11 | 16 | 11823790 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAGTGGGTAACATACTTGTGCTTTGTGTTATCCGCCGATATCGCCAATCT[C/T]GACACAGTCCCTGCTCCTTCTCACTGACAGACACCTTCCTGCTACATTTG
Long Flanking Sequence:
TAAAAAAATCTGTAATTTTGCTGGGGTGCCAGAAAAAAAAAAAGTAAAATAACGTCCGTTAAATTACAGAAATAACTGTAAAATAATGGACATTAACTTACAGAAATTTACTTAAATAAAAAATGTTGGTAAATTTCTGTAATTCAACCTCTGTTATTTTACAGTAAATTTCTGTAATTTAACAGCCTTTATTTTTTGGTTTATTTCCGGCACCCCAGCTGCCAGGAATAAACCATGAAATTACAGATTTTTTTACAGTGTACTTTAAGATGCTGAAATGACCAAGATATTGAAAGGCATCTTTTTTGTTACAGCCTACAGATTATGACTACAACAGTACTTCCTATGATGATGATAATCCTTACGCTGCCCCCTGCAGTCTGACAGAAACATGGAATTTTCTTGGTCGCTTTGCACCTGTGGCTTACATCCTGGTGTTTATCCTGGCGCTAGTGGGTAACATACTTGTGCTTTGTGTTATCCGCCGATATCGCCAATCT[C/T]GACACAGTCCCTGCTCCTTCTCACTGACAGACACCTTCCTGCTACATTTGGCCGTCTCAGACCTTCTTCTGGCTGCAACATTGCCATTTTTCGCCGTCGAGTGGATCAGCGAGTGGGTGTTTGGCAAGGTCATGTGTAAAATAACTGGAGCTTTGTTCTCGCTGAATGTTTATTGTGGGGTGCTCTTCCTGGCATGTATCAGCTTTGACAGATACCTGGCTATTGTCCACGCCATCAATATCAGCTGGAGACGCAAAACCTGCCACGCTCAGCTGGCCTGCGCCTTCATTTGGGTCATCTGTTTGGGATTGTCCATGGTGGACATGCACTTTCGTGACTTAGTGGAAATTCCTGGCATGAATCGAATGGTGTGCCAAATAGTTTATTCTGAACAATACTCCAAGCAATGGCAGATTGGTATGCAGCTGGTAAGCATGGTTCTTGGGTTCATACTTCCTCTGTTGGTAATGCTGTATTGCTACCTTCACATTTTCAAAGCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa8709
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000060137 | Nonsense | 206 | 378 | 3 | 3 |
| ENSDART00000145727 | Nonsense | 206 | 219 | 3 | 3 |
Genomic Location (Zv9):
Chromosome 16 (position 13574190)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 11933281 |
| GRCz11 | 16 | 11824183 |
KASP Assay ID:
2260-9308.1 (used for ordering genotyping assays)
KASP Sequence:
TGSAAATTCCTGGCATGAATCGAATGGTGTGCCAAATAGTTTATTCTGAA[C/T]AATACTCCAAGCAATGGCARATTGGTATGCAGCTGGTAAGCATGGTTCTT
Long Flanking Sequence:
GGAATTTTCTTGGTCGCTTTGCACCTGTGGCTTACATCCTGGTGTTTATCCTGGCGCTAGTGGGTAACATACTTGTGCTTTGTGTTATCCGCCGATATCGCCAATCTCGACACAGTCCCTGCTCCTTCTCACTGACAGACACCTTCCTGCTACATTTGGCCGTCTCAGACCTTCTTCTGGCTGCAACATTGCCATTTTTCGCCGTCGAGTGGATCAGCGAGTGGGTGTTTGGCAAGGTCATGTGTAAAATAACTGGAGCTTTGTTCTCGCTGAATGTTTATTGTGGGGTGCTCTTCCTGGCATGTATCAGCTTTGACAGATACCTGGCTATTGTCCACGCCATCAATATCAGCTGGAGACGCAAAACCTGCCACGCTCAGCTGGCCTGCGCCTTCATTTGGGTCATCTGTTTGGGATTGTCCATGGTGGACATGCACTTTCGTGACTTAGTGGAAATTCCTGGCATGAATCGAATGGTGTGCCAAATAGTTTATTCTGAA[C/T]AATACTCCAAGCAATGGCAGATTGGTATGCAGCTGGTAAGCATGGTTCTTGGGTTCATACTTCCTCTGTTGGTAATGCTGTATTGCTACCTTCACATTTTCAAAGCTCTGTGCCATGCCACACGTAGGCAGAAACGCCGCTCACTGAGGCTCATCATCTCCTTAGTCATCGTGTTCGTGATCAGCTGGGCGCCTTATAATGCTCTGCGGATGACTGACAGCTTGCAGATGTTAGGCGTCATTGTCAAATCCTGCGCATTGAACAATGTGTTGGATGTGGGCATTCTGGTGACAGAAAGTCTGGGCTTGGCACATTGCGCTTTAAATCCTCTACTTTATGGGCTTGTGGGAGTGAAGTTTCGCCGTGAGCTTGCCCAGATGTGCAAGGCTGCTTTAGGACCCCAGGGGTGCCTCGGGTTGGTGGGATGGGCAAACGGTCGAGGATCAAGCACCCGGAGGCCTACTGGATCATTCAGTTCAGTGGAGACCGAGAACACTTCG
Associated Phenotype:
Not determined