ZMP
si:ch211-241e1.2
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to vertebrate calcium channel, voltage-dependent, alpha 1E subunit (CACNA1E) [
Human Orthologue:
CACNA1E
Human Description:
calcium channel, voltage-dependent, R type, alpha 1E subunit [Source:HGNC Symbol;Acc:1392]
Mouse Orthologue:
Cacna1e
Mouse Description:
calcium channel, voltage-dependent, R type, alpha 1E subunit Gene [Source:MGI Symbol;Acc:MGI:106217]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa8525 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa1803 | Splice Site | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa8525
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000134656 | Nonsense | 332 | 939 | 8 | 24 |
Genomic Location (Zv9):
Chromosome 2 (position 1216225)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 2 | 1162046 |
| GRCz11 | 2 | 1032454 |
KASP Assay ID:
2259-1443.1 (used for ordering genotyping assays)
KASP Sequence:
CTAAAGAGAGAGAGCGGGTGGAGAACAGACGTGCTTTCATGAAACTCAGA[C/T]GACAACAGCAGGTGGAGAGAGAACTGAACGGCTACCGGGCATGGATAGAC
Long Flanking Sequence:
AAATTAAAGCTTTTTTTAAAAACAATACATTTGGCACTCAAATATAGGTTGAATTTAATTGGAAGCTCCACATTCAAGCACATTTTTTTACATTACAGAAAGAGAAATCAACTTATTTTAATATCGTAACTCAATAATTTCATGGTTTGATAATATAACATGCTTATTTTGAAGATGTACAGCCAGTGAATGAATGTGAGAGTGATTAGCTTCTGGTGGGCCTGCAGTCGTGGGTGGGCTGGAAAGCATGCTTGGTTCTCTAGGGACTGATTACTGCACTCCTTCTAAAGTAAATCAGCCTCCACAGAGTTTCTCAGCACATCTATAGGCTTTACAGGTTGTGAAAGGTCAAATCTTAAATAGCATGCATTGTCTTGACCATTTACTGAATTTGTACTGTGTATATGTTTAATGACACTTCATTTGCTTAACGTTTCTCTAGGGAGTTTGCTAAAGAGAGAGAGCGGGTGGAGAACAGACGTGCTTTCATGAAACTCAGA[C/T]GACAACAGCAGGTGGAGAGAGAACTGAACGGCTACCGGGCATGGATAGACAGAGCAGGTACTGACAAATGTTCATCAGTTCAGCTAATCTATGGCGTGCAAACAGTGATAGAAAAAGAACTATCATACTCAAGAGAAAGCACCATTACCATTAAAAACTTTTGTGCAAGTTAAGATGATCTGTTGATGAATGCCTCTGAAACATGACAGTTTCACTTTGTTATGGTTATACATTGCAAATACTATACTCCACAAGTACACAAGCTATGATGACTTTCACCTTGATATTTTAGTGTGGATGTATACCTAGCCGAATTGCACTGTAGGTGAAACGAACCTGTGTGTATTCCTACTGTGAAATTACCACATCAAACGTGACGTGCTAACATGATTGCAGTTTACACGAGTAAATCTAATTAATGTTAGCTCCACGTCTAAATATCAGGTACCTGTACAGTTTATACGTTCCAGTAAAACGCATACAAATAAAATGGAGCGGGT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa1803
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000134656 | Splice Site | None | 939 | None | 24 |
Genomic Location (Zv9):
Chromosome 2 (position 1248735)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 2 | 1194556 |
| GRCz11 | 2 | 1064964 |
KASP Assay ID:
554-1795.1 (used for ordering genotyping assays)
KASP Sequence:
TATATACACTTTGGCATATAAGTATAAAATGCTAACAAACGTATGCTGTT[T/A]GATGCAGATGATTGACCAGGGCCTCATTCTTCACGATGGGTCGTATTTTC
Long Flanking Sequence:
ATTATTGATGAAATTACCCATTATTTGTATTTTATTATCGTCTACCACCAACCCAACCCTCACATTAATGTAAAAACTGTGATTATAGCAATAATTATTGATGAAATTACTAATTAATTGTATTTTATTATCGTCTACCACCAACCCAACCCTCACAGTAATGTAAAAACTGTCATTATAGCAATAATTAGGAAATTACTCATATATAGCCTTGTTTATATTCCCTCTTTATTCTCTTGAACTTAAAGAGGGGGTTTCATGACTGTTTTAGGACTCAAACAATGACTACAATGTAAAGTAATTGACTTAGCAATATGCATATCTTTGTAAATTAAAGTTGTTTACTGTTTGTTCTGCAGGTTCTGCGTTACTTTGATTATGTTTTCACTGGAGTTTTCACATTTGAGATGATCATAAAGGTATTAATGCTTTGTCACTCAATTCCAAACATATATACACTTTGGCATATAAGTATAAAATGCTAACAAACGTATGCTGTT[T/A]GATGCAGATGATTGACCAGGGCCTCATTCTTCACGATGGGTCGTATTTTCGGGACATGTGGAACATTCTGGATTTTATTGTGGTGGTGGGAGCTCTGATTGCGTTTGCATTGACGTAAGTACTTTAATTACATCTGTCTACCTTATTATGTCAGATTTTGCGTTAATGCGTTTGTCAGCTTTAACCATACCTGGGGCTGGATCCAGACTTCAGATCTGGGGCCGGTTGCACTGACAGTATGCAAGTTGCAACGTAATATAATAGTAAATGTTATTAACTGTATTTGTATGAACGTTTGCTTGGCCCACATACCGCAGTGAATTACGGTACATGACTGAACCAAGTCTGGCTTTCATACAAGGGCCAAACATGGACCATTTACTGGGTTAGGTCTCTGTCACGTTCAGGTGAGGGGAAAAAGGGGCGAGGACCCAAGCGCAGAGTCAAATAGTATTTATTTATATTAAAATAAAATAAAAGGCAAAAATAAACAACCCCGA
Associated Phenotype:
Not determined