ZMP
si:dkey-60a16.3
Ensembl ID:
ZFIN ID:
Description:
Novel protein [Source:UniProtKB/TrEMBL;Acc:Q5RGW7]
Human Orthologue:
ARID1B
Human Description:
AT rich interactive domain 1B (SWI1-like) [Source:HGNC Symbol;Acc:18040]
Mouse Orthologue:
Arid1b
Mouse Description:
AT rich interactive domain 1B (SWI-like) Gene [Source:MGI Symbol;Acc:MGI:1926129]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa8523 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa43376 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa8523
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000138818 | Nonsense | 126 | 1840 | 2 | 20 |
Genomic Location (Zv9):
Chromosome 20 (position 5081485)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 4996852 |
| GRCz11 | 20 | 5039765 |
KASP Assay ID:
2261-3924.1 (used for ordering genotyping assays)
KASP Sequence:
TCTCAGATGTATGGGATGGGCAACARTCCCTAYTCYCAGCAAGGAACTTA[T/A]GCCGGACAGCCATACGGATCACCCACTGCTCACCGATATCCAATGGGAAT
Long Flanking Sequence:
TGTGTGTGCGCGTGACTGCAGAGCACTCTGGCGTGACTGCTGACGCTTAAAATGTTCATTTATAGTGGCCTCCCAGGCTTTCTCAAATTGGTCACATTTTCTGTAAGTGCTGCTTCAATTGGCCTGAATTTGGCAGTGACATGAGAAGATTAGCTTGGATGGCTCTCAGTCTTTTCTGGCAAAGATGAGACACTTGAGAGAAAACCTGAACCCACCCCCCACTCACCCCCCAATATCAGTCGATGGCACATTGCCCTGAATCTCTCCATTTACCGAGGCGCTCAACCTTATGATTACTATTTGTATTCCAGTCTGCTCAGCCATAATAGTCACATAAATGTGTTCACACAGACTGCCTTACATTGGAAATCACCGTCGATGTTCCTCATGCTAAAGTGTTGACATCACTCTCAACAGGTGGCAACTATGGACCCTATGACCATGAAGCGTTCTCAGATGTATGGGATGGGCAACAATCCCTATTCCCAGCAAGGAACTTA[T/A]GCCGGACAGCCATACGGATCACCCACTGCTCACCGATATCCAATGGGAATGCAGGGCCGTGGGCAAGTTGGCATCGGAGGAATGCAGTACTCTCAGCAACAGGTAGAAACAATGAGTGTTACTAAAGATTACTCAGAAAACAAAGCTCTTTTTAAAGCTGTACAGTAGGGCTGCATGATACTTTGAGGTTTTGCAATGTTTTGGTGCTCTGAGATTATATATTGCAATTAAAAATACAGATTCGCCAGTTGATTTTGAGCTCTTTTTGGAAACAATTCATAATTTTACAATGATTGGGATGATTTTGTAGGGGAGTGTATCTGCATTAGTAATAATAAACAAATTACTTGCATAGATAAACACATTAGAGCAAAGATACAAATGAAATAAAGCGCTTTATTGATTTTAAGAGATTAAAGGCTGATTTATACTTTCCGCCACGTCGCTAAACTCTGCTGACTGTGCATGCACCTCGTGAAATAGACAAGGCTTTTAGAGCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa43376
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000138818 | Nonsense | 777 | 1840 | 13 | 20 |
Genomic Location (Zv9):
Chromosome 20 (position 4960623)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 4875990 |
| GRCz11 | 20 | 4918903 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCGGAGAAGAACCTCCACCTGATGCGTTCGCTATGGGCGATGGCAAGAAG[C/T]AGCAACAGCAAGCCAAGATCCAGCCACCATCGCCTGGTAAAACATTTTTT
Long Flanking Sequence:
TAACCAAAGACCCCCCCTGTTAAAGACCACTGCTTTAAACAAAGCCTTTGTTTACCTCCAGCTTTCTGTGGGCGGTAACAGCGCAATGCTAATTATTTCTAGCTAACAGCGATGTTGTTTGTGAATAACGCACATTCTATAATGAGGCTCATTTGCATAGAAAAGAGGTATGTTTATTTAAAAAACACACAAACGCAATGGATTGCTTTTAGAAGTATGTAGCACCTGGTTATGCTAAAGTGTGAGTCGATCAGTCATAGGATGAGATGGAGGATTTGATTGTTTGTGGTGTGGTTTTTGATTGAGCATCTCTCCTCAAACAGGTAAATAAGAACAAGAAATGGAGAGAGCTGTCCACCCACTTGAATGTGGGGACGTCCAGCAGCTCGGCCAGCTCCCTTAAGAAACAGTATATCCAATACCTGTTTGCCTACGAGTGCAAGGTGGAGCGCGGAGAAGAACCTCCACCTGATGCGTTCGCTATGGGCGATGGCAAGAAG[C/T]AGCAACAGCAAGCCAAGATCCAGCCACCATCGCCTGGTAAAACATTTTTTCAATATCATTTTAGACAGAACACACAACTTTATATTAAAAACATAGTTTACCCCAAAATTAAAATGCATTTACCTCTTCAGCCAATTCAAGCTGTTTGGAGGGCAAAACAAGAATAACTACGAGTTGTACATCATTCATGGAGCTTTACTTTTTTTTATATTATATAGCTAAAAAAAATGCTAATTTGTCAGTTTCTGTCTTTGTTGATATTAGTAGAAAAATTTGTGGTATAATATATATATATATATATATATATGTGTGTGTGTGTCTATGTATGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTAAGGGTGAAACGATACCCGTATTTGTATTGAACCGTTCGGTACGTGACTTTCGGTTCTTTACGGATTAGAAACCGAACGACTAACATCTGAAAAGGTAAAGGAGAA
Associated Phenotype:
Not determined