ZMP
chd2
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to human chromodomain helicase DNA binding protein 2 (CHD2) [Source:UniProtKB/
Human Orthologue:
CHD2
Human Description:
chromodomain helicase DNA binding protein 2 [Source:HGNC Symbol;Acc:1917]
Mouse Orthologue:
Chd2
Mouse Description:
chromodomain helicase DNA binding protein 2 Gene [Source:MGI Symbol;Acc:MGI:2448567]
Alleles
There are 7 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa23307 | Nonsense | Available for shipment | Available now |
sa36653 | Essential Splice Site | Available for shipment | Available now |
sa15642 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa23307
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000085735 | Nonsense | 132 | 1694 | 3 | 35 |
ENSDART00000127730 | Nonsense | 128 | 1813 | 3 | 37 |
ENSDART00000136434 | Nonsense | 127 | 148 | 3 | 4 |
Genomic Location (Zv9):
Chromosome 18 (position 24765191)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 18 | 24994964 |
GRCz11 | 18 | 24981496 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAAGATCCAGTCGCAGTAGACAAGAGCCTGCACGCCTTAATATTGGAGCT[G/T]AGGTAAATAATAATTCAACCCTGACCTCTAGTGGTTGCTTTCAGTCTTTC
Long Flanking Sequence:
TGCACTCTTGAGGTATTAATATGAACTTTTTAGGTACAGATTTGTATCTTTTGAAAAGGTACCACCCCAGTGACAGCTTTCCTTTACCTTTCCTTTTCCTTTCCTTTTTTACCTTTATTTCTGAGAGTGTAGCTTCCTATTAAAAATATGAATTTAAAAGATACATTTGTGAGGGATGTACTTATATATGCTGAGCACTGTATATCTGCATAATATATTAAGCACACATATTATTAAAATGCAAACTTTTATTTTGGATGTGATTGCAATAAATTATTTGATAGTATCAAAATAGATAGCTTGCTTGCTATTATTGTCATAATATTATGGTTTAAAATATGTAAGTGCAAATGTCTGACAGGTGACAGTTAATTGGTTGCAAGCTTTTAAAAAGAATTTCTCCCTGCTTACCGTAGATGTGGGAAGAACATCCTGATGTTTATGGTGTGAGAAGATCCAGTCGCAGTAGACAAGAGCCTGCACGCCTTAATATTGGAGCT[G/T]AGGTAAATAATAATTCAACCCTGACCTCTAGTGGTTGCTTTCAGTCTTTCACATCCTCATTTCACACTCGTCGGAAGAGTTGACGATCAGCGGGTTCTGCTTCTGAAGGAATTATTACAGTCATGGTTAATTAGTGGAGCATAAACACTCTATGTTTGGATTCGGAAGTGATCAGGCTTTGCAGTCTTGACTTGTGTAAACATAACCCTGTGTGCTGAAAGCTTTGTTTTCTTGAGTAATCTAAAACATTATGCTCTCATGCTGTTTGATCTAGCTTGTTCCTTGTATTCTAAATGGATTTTCATGGGTTTTAATTTTTAGGGCAGCAGTGATTCAGAGGGAGAAAGTTCCAAACGAAAAAGCTCTCGGCAGAAAAAGAAAGAGTAAGTGTAATGGAAGTCTACAAACAGGTCTCTCGTCCAACTTTTTCCATGTGTATGTATAGATTTGTTGTGCTTATGATTTCCTTTTAGTCTTCATGAATGTCAGTATTTATAAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa36653
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000085735 | Essential Splice Site | 496 | 1694 | 11 | 35 |
ENSDART00000127730 | Essential Splice Site | 506 | 1813 | 12 | 37 |
ENSDART00000136434 | None | None | 148 | None | 4 |
Genomic Location (Zv9):
Chromosome 18 (position 24754317)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 18 | 24984090 |
GRCz11 | 18 | 24970622 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGATTACCAGCTAGATGGAGTGAACTGGCTGGCACACTCCTGGTGCAGG[T/C]ATGTAACGCACCAGAGGTGTTATGAGTGTGAGTGTGTCTAAATGAGTGTG
Long Flanking Sequence:
GAAATCTCAGAAGTAGATTTCAGATCTACTTTTTCGGTAGGGATGTTTACTACTTTAATCATCGGCTGATATGTTTCAACAGCTCATAAAAGCAGCTCTGGTGAGCCCGAGTACCTGTGTAAATGGATGGGTCTGCCGTACGCTGAGTGCACATGGGAGGACAGCGCTTTAATCAAAAAGAAATTTCAGGCCTGCATTGACAGTTTCCACAACAGAAACAGCTCCAAGACTGTCCCTTCCAAAGACTGTAAGGTGAGTCTGCGCAGATGGAGCTTTGATTTCTTCTTATCACTGTTATGTTTTGGGAAAGGGTGTTGAAGCACTGCTCTGGTATGTTATGTAAGCCCTGTTATCTTTTTCTGTTTAAATGGAAGGTGTTGAAGCAGAGGCCAAGATTTGTGCCCTTAAAGAAGCAGCCATCGTACATTGGAGATGAGAATCTTGAACTCAGAGATTACCAGCTAGATGGAGTGAACTGGCTGGCACACTCCTGGTGCAGG[T/C]ATGTAACGCACCAGAGGTGTTATGAGTGTGAGTGTGTCTAAATGAGTGTGTTTGGGTGTTTCCCAATAGTTGCAGCTGGAAGGACATCTGCTGCGTAAAACATATGCTGGAATAGTTGACGGTCCATTCCGCTTTGGTGACCTCTGAAATAGAAAGCATGTTTTTCTGTCCTTAAAATAGCAAAAGTGGATCTGAACACGCCTTTAATGCTTTTGCGCCATGCGTTTTAGACTTTGAGCCTAGATTGTTGAAATCGAGCCCCCTAGACTTTCTTTGCATTTGGACTTCATTTAATTAAAGCCTTATTAATAATTAAATTATTAAATAATCAACAATATTGACATAAAAATAATAACTGTCCTAATATACAATGCTATCTGGATGCATGATTAAATATAATTGTTTAATCTAATTATATGTTATAATAACAATAATAATAATACTAATAATAATATTAATAATAATAATAATAATAATAATAATAATAATAATTATTATTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15642
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000085735 | Essential Splice Site | 662 | 1694 | 14 | 35 |
ENSDART00000127730 | Essential Splice Site | 672 | 1813 | 15 | 37 |
ENSDART00000136434 | None | None | 148 | None | 4 |
Genomic Location (Zv9):
Chromosome 18 (position 24752301)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 18 | 24982074 |
GRCz11 | 18 | 24968606 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AACTCCCTCAAAGAGCTRTGGTCCCTTCTGCAMTTTCTGATGTCTGACAA[G/T]TAGGTACTCAYWGTTAGGGTYACRTCTTTAGATGCAAATATAGATTCATA
Long Flanking Sequence:
ATGTACTGCACACTGACCATTTAAAAAATGAACAAGCGTAATAAGGTCACTTTAAAGGAAGTTGCTCTCATGATTCACTTAAATCACCATGGTATGTAGGAAGGTGGATTACAATTTCTTATCATTACAGATCCGAGACTATGAATGGATCAATCCACAGACAAAAAGGATCAAGTTTAATGCACTTTTGACCACATATGAAATTCTACTGAAGGACAAGGTATGAGAACCACATCTTTGATTTAATCGTTTGTTGTCATTTTTCAATAATCGGACATTATTGAGTTGAGTCTTGTTGTGTGTGTTCAGGGAGTGCTGGGGAATATAAACTGGGCTTTCCTTGGAGTAGATGAAGCTCACCGGCTTAAGAATGACGACTCGCTGCTGTATAAAACTCTGATCGACTTTCGATCCAATCACAGGCTGCTTATTACCGGGACTCCTCTGCAAAACTCCCTCAAAGAGCTGTGGTCCCTTCTGCACTTTCTGATGTCTGACAA[G/T]TAGGTACTCATAGTTAGGGTTACGTCTTTAGATGCAAATATAGATTCATAAGGAGTGGAAAATAAAGAGAAAGACCATTTTCTAAATGGCCTCAAAGTATTAATTCTAAATTAGGGATGCACCGATACCATTTTTTTGGGTTTGATCCTGATACCAAAATTGTGTGTATCAACCGACACGGATCCGATTCCTATACTGTGCTGTTTTTTTTTAATGCTTTTTAAAGCATAATACAGTTTTTTATAGTTCTGGTAATAATATATCTATATCATAATATATCTTCTTTAGCAAAAGTAACCGACCTACAATCTAGCTTAAACATGATGTGTGCTGTTAGCTAGGCTACATTATTTGAGCATTTGTTATGATATTGATCTGTTGTGGTCCAGCTTATGTTTCCTTTGAAACCCTAATCAAAACACAAACTGTTAAATAAATTATTAATATCAATAAAATTACAGTCAAATATTCACAGTTTCATAGTAGCCTATATTAGGCTA
Associated Phenotype:
Not determined