Busch Lab

ZMP

chd2

Ensembl ID:
ENSDARG00000060687
ZFIN ID:
ZDB-GENE-050419-256
Description:
Novel protein similar to human chromodomain helicase DNA binding protein 2 (CHD2) [Source:UniProtKB/
Human Orthologue:
CHD2
Human Description:
chromodomain helicase DNA binding protein 2 [Source:HGNC Symbol;Acc:1917]
Mouse Orthologue:
Chd2
Mouse Description:
chromodomain helicase DNA binding protein 2 Gene [Source:MGI Symbol;Acc:MGI:2448567]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa23307 Nonsense Available for shipment Available now
sa36653 Essential Splice Site Available for shipment Available now
sa15642 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa23307
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085735 Nonsense 132 1694 3 35
ENSDART00000127730 Nonsense 128 1813 3 37
ENSDART00000136434 Nonsense 127 148 3 4
Genomic Location (Zv9):
Chromosome 18 (position 24765191)
Other Location(s):
Assembly Chromosome Position
GRCz10 18 24994964
GRCz11 18 24981496
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAAGATCCAGTCGCAGTAGACAAGAGCCTGCACGCCTTAATATTGGAGCT[G/T]AGGTAAATAATAATTCAACCCTGACCTCTAGTGGTTGCTTTCAGTCTTTC
Long Flanking Sequence:
TGCACTCTTGAGGTATTAATATGAACTTTTTAGGTACAGATTTGTATCTTTTGAAAAGGTACCACCCCAGTGACAGCTTTCCTTTACCTTTCCTTTTCCTTTCCTTTTTTACCTTTATTTCTGAGAGTGTAGCTTCCTATTAAAAATATGAATTTAAAAGATACATTTGTGAGGGATGTACTTATATATGCTGAGCACTGTATATCTGCATAATATATTAAGCACACATATTATTAAAATGCAAACTTTTATTTTGGATGTGATTGCAATAAATTATTTGATAGTATCAAAATAGATAGCTTGCTTGCTATTATTGTCATAATATTATGGTTTAAAATATGTAAGTGCAAATGTCTGACAGGTGACAGTTAATTGGTTGCAAGCTTTTAAAAAGAATTTCTCCCTGCTTACCGTAGATGTGGGAAGAACATCCTGATGTTTATGGTGTGAGAAGATCCAGTCGCAGTAGACAAGAGCCTGCACGCCTTAATATTGGAGCT[G/T]AGGTAAATAATAATTCAACCCTGACCTCTAGTGGTTGCTTTCAGTCTTTCACATCCTCATTTCACACTCGTCGGAAGAGTTGACGATCAGCGGGTTCTGCTTCTGAAGGAATTATTACAGTCATGGTTAATTAGTGGAGCATAAACACTCTATGTTTGGATTCGGAAGTGATCAGGCTTTGCAGTCTTGACTTGTGTAAACATAACCCTGTGTGCTGAAAGCTTTGTTTTCTTGAGTAATCTAAAACATTATGCTCTCATGCTGTTTGATCTAGCTTGTTCCTTGTATTCTAAATGGATTTTCATGGGTTTTAATTTTTAGGGCAGCAGTGATTCAGAGGGAGAAAGTTCCAAACGAAAAAGCTCTCGGCAGAAAAAGAAAGAGTAAGTGTAATGGAAGTCTACAAACAGGTCTCTCGTCCAACTTTTTCCATGTGTATGTATAGATTTGTTGTGCTTATGATTTCCTTTTAGTCTTCATGAATGTCAGTATTTATAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa36653
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085735 Essential Splice Site 496 1694 11 35
ENSDART00000127730 Essential Splice Site 506 1813 12 37
ENSDART00000136434 None None 148 None 4
Genomic Location (Zv9):
Chromosome 18 (position 24754317)
Other Location(s):
Assembly Chromosome Position
GRCz10 18 24984090
GRCz11 18 24970622
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGATTACCAGCTAGATGGAGTGAACTGGCTGGCACACTCCTGGTGCAGG[T/C]ATGTAACGCACCAGAGGTGTTATGAGTGTGAGTGTGTCTAAATGAGTGTG
Long Flanking Sequence:
GAAATCTCAGAAGTAGATTTCAGATCTACTTTTTCGGTAGGGATGTTTACTACTTTAATCATCGGCTGATATGTTTCAACAGCTCATAAAAGCAGCTCTGGTGAGCCCGAGTACCTGTGTAAATGGATGGGTCTGCCGTACGCTGAGTGCACATGGGAGGACAGCGCTTTAATCAAAAAGAAATTTCAGGCCTGCATTGACAGTTTCCACAACAGAAACAGCTCCAAGACTGTCCCTTCCAAAGACTGTAAGGTGAGTCTGCGCAGATGGAGCTTTGATTTCTTCTTATCACTGTTATGTTTTGGGAAAGGGTGTTGAAGCACTGCTCTGGTATGTTATGTAAGCCCTGTTATCTTTTTCTGTTTAAATGGAAGGTGTTGAAGCAGAGGCCAAGATTTGTGCCCTTAAAGAAGCAGCCATCGTACATTGGAGATGAGAATCTTGAACTCAGAGATTACCAGCTAGATGGAGTGAACTGGCTGGCACACTCCTGGTGCAGG[T/C]ATGTAACGCACCAGAGGTGTTATGAGTGTGAGTGTGTCTAAATGAGTGTGTTTGGGTGTTTCCCAATAGTTGCAGCTGGAAGGACATCTGCTGCGTAAAACATATGCTGGAATAGTTGACGGTCCATTCCGCTTTGGTGACCTCTGAAATAGAAAGCATGTTTTTCTGTCCTTAAAATAGCAAAAGTGGATCTGAACACGCCTTTAATGCTTTTGCGCCATGCGTTTTAGACTTTGAGCCTAGATTGTTGAAATCGAGCCCCCTAGACTTTCTTTGCATTTGGACTTCATTTAATTAAAGCCTTATTAATAATTAAATTATTAAATAATCAACAATATTGACATAAAAATAATAACTGTCCTAATATACAATGCTATCTGGATGCATGATTAAATATAATTGTTTAATCTAATTATATGTTATAATAACAATAATAATAATACTAATAATAATATTAATAATAATAATAATAATAATAATAATAATAATAATTATTATTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15642
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085735 Essential Splice Site 662 1694 14 35
ENSDART00000127730 Essential Splice Site 672 1813 15 37
ENSDART00000136434 None None 148 None 4
Genomic Location (Zv9):
Chromosome 18 (position 24752301)
Other Location(s):
Assembly Chromosome Position
GRCz10 18 24982074
GRCz11 18 24968606
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AACTCCCTCAAAGAGCTRTGGTCCCTTCTGCAMTTTCTGATGTCTGACAA[G/T]TAGGTACTCAYWGTTAGGGTYACRTCTTTAGATGCAAATATAGATTCATA
Long Flanking Sequence:
ATGTACTGCACACTGACCATTTAAAAAATGAACAAGCGTAATAAGGTCACTTTAAAGGAAGTTGCTCTCATGATTCACTTAAATCACCATGGTATGTAGGAAGGTGGATTACAATTTCTTATCATTACAGATCCGAGACTATGAATGGATCAATCCACAGACAAAAAGGATCAAGTTTAATGCACTTTTGACCACATATGAAATTCTACTGAAGGACAAGGTATGAGAACCACATCTTTGATTTAATCGTTTGTTGTCATTTTTCAATAATCGGACATTATTGAGTTGAGTCTTGTTGTGTGTGTTCAGGGAGTGCTGGGGAATATAAACTGGGCTTTCCTTGGAGTAGATGAAGCTCACCGGCTTAAGAATGACGACTCGCTGCTGTATAAAACTCTGATCGACTTTCGATCCAATCACAGGCTGCTTATTACCGGGACTCCTCTGCAAAACTCCCTCAAAGAGCTGTGGTCCCTTCTGCACTTTCTGATGTCTGACAA[G/T]TAGGTACTCATAGTTAGGGTTACGTCTTTAGATGCAAATATAGATTCATAAGGAGTGGAAAATAAAGAGAAAGACCATTTTCTAAATGGCCTCAAAGTATTAATTCTAAATTAGGGATGCACCGATACCATTTTTTTGGGTTTGATCCTGATACCAAAATTGTGTGTATCAACCGACACGGATCCGATTCCTATACTGTGCTGTTTTTTTTTAATGCTTTTTAAAGCATAATACAGTTTTTTATAGTTCTGGTAATAATATATCTATATCATAATATATCTTCTTTAGCAAAAGTAACCGACCTACAATCTAGCTTAAACATGATGTGTGCTGTTAGCTAGGCTACATTATTTGAGCATTTGTTATGATATTGATCTGTTGTGGTCCAGCTTATGTTTCCTTTGAAACCCTAATCAAAACACAAACTGTTAAATAAATTATTAATATCAATAAAATTACAGTCAAATATTCACAGTTTCATAGTAGCCTATATTAGGCTA
Associated Phenotype:
Not determined