Busch Lab

ZMP

sec22c

Ensembl ID:
ENSDARG00000063387
ZFIN ID:
ZDB-GENE-060227-2
Human Orthologue:
SEC22C
Human Description:
SEC22 vesicle trafficking protein homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:16828]
Mouse Orthologue:
Sec22c
Mouse Description:
SEC22 vesicle trafficking protein homolog C (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:2447871]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa37875 Nonsense Mutation detected in F1 DNA Not yet available
sa8381 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa7516 Missense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa37875
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000092591 Nonsense 33 305 1 6
ENSDART00000142848 Nonsense 33 303 2 7
Genomic Location (Zv9):
Chromosome 24 (position 21268446)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 20515575
GRCz11 24 20659994
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCCTCTCTCCGCCTCCACTGATTTCCTGCATAACAAGGAACTTCAGGAG[A/T]AAAAGCAACAGATTAAAATCATCTCGAAATCCTTGAATGTCTTACCAGAG
Long Flanking Sequence:
GATTTAATAAATGTTTCTACCTGAAGGCTAATTATGCTTTTAAATGTTTAAAATTAGTTTCTTAGATGCATATAATGAGTATACATATTCCTACATATAAATTCTGCCGTTGTATGATTTAATTCTTTTGATTCAGATATAAAAAAAAACATTCATGACTTTTATATACAACAAAAGACTATTATTATTTACAGAAAAAAACATATAGTTTAAATAATTTATTTGTTTTAAAATCAATATCATTAGATCGATACACACTTCAGAAGTATTATTTATTGTTAGTCCTTGTTAACTCATGTACTTAACAGGGAATAATAAGGTGAAAAACACATTTAAAAATAACTATCTGTTTCTCTCCTGTGCTGTGTGTTCAGGATGTGTTCTCATAGAGCTTCACGAGGAGCATGTCACTGATCCTGTTTGCTTTTGTGGTCCGGGTCAGGGACGGACTCCCTCTCTCCGCCTCCACTGATTTCCTGCATAACAAGGAACTTCAGGAG[A/T]AAAAGCAACAGATTAAAATCATCTCGAAATCCTTGAATGTCTTACCAGAGAGAGGGACAGTCAAGGGCCATGAGCTCAACATTCAGTAAGTGCACTATAGTGTCTTGAGCTTAAGTCACCCCATATTATTACCCTAATGATACATGATAAATTGCTAAAAATGCAGAAGAATAAAGAGGATATGTGAATTATGTAAGGGTATAACTGTTCACCGTTTCTCAATATATTGCAACTGCAGTGACGCAATGTGCATTAGTGCTTCAGCAGTTTTTCTGTTACAGAATATTTTCCTATAGGCATTTAAAAAAAAGAGTCTTAGTTAAAGTGTTATACGCCATGAAGAGAAACAAAAAGCTACAAGGAGCTATAACATTACAATTTTTGATTTTTAAATCAGAGCAGTATATAAAAATCAGTCAGCAAAGGTACAAAACTTATAGCATACAAATGTTTAAACACAGTTACGTAAAAAGGAAATTGTTCAGAGTTAAACTATCCAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8381
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000092591 Essential Splice Site 61 305 1 6
ENSDART00000142848 Essential Splice Site 61 303 2 7
Genomic Location (Zv9):
Chromosome 24 (position 21268532)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 20515661
GRCz11 24 20660080
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AATGTCTTACCAGAGAGAGGGACAGTCAAGGGCCATGAGCTCAACATTCA[G/A]TAAGTGCACTATAGTGTCTTRAGCTTAAGTCACCCCATATTATTACCCTA
Long Flanking Sequence:
ATTCCTACATATAAATTCTGCCGTTGTATGATTTAATTCTTTTGATTCAGATATAAAAAAAAACATTCATGACTTTTATATACAACAAAAGACTATTATTATTTACAGAAAAAAACATATAGTTTAAATAATTTATTTGTTTTAAAATCAATATCATTAGATCGATACACACTTCAGAAGTATTATTTATTGTTAGTCCTTGTTAACTCATGTACTTAACAGGGAATAATAAGGTGAAAAACACATTTAAAAATAACTATCTGTTTCTCTCCTGTGCTGTGTGTTCAGGATGTGTTCTCATAGAGCTTCACGAGGAGCATGTCACTGATCCTGTTTGCTTTTGTGGTCCGGGTCAGGGACGGACTCCCTCTCTCCGCCTCCACTGATTTCCTGCATAACAAGGAACTTCAGGAGAAAAAGCAACAGATTAAAATCATCTCGAAATCCTTGAATGTCTTACCAGAGAGAGGGACAGTCAAGGGCCATGAGCTCAACATTCA[G/A]TAAGTGCACTATAGTGTCTTGAGCTTAAGTCACCCCATATTATTACCCTAATGATACATGATAAATTGCTAAAAATGCAGAAGAATAAAGAGGATATGTGAATTATGTAAGGGTATAACTGTTCACCGTTTCTCAATATATTGCAACTGCAGTGACGCAATGTGCATTAGTGCTTCAGCAGTTTTTCTGTTACAGAATATTTTCCTATAGGCATTTAAAAAAAAGAGTCTTAGTTAAAGTGTTATACGCCATGAAGAGAAACAAAAAGCTACAAGGAGCTATAACATTACAATTTTTGATTTTTAAATCAGAGCAGTATATAAAAATCAGTCAGCAAAGGTACAAAACTTATAGCATACAAATGTTTAAACACAGTTACGTAAAAAGGAAATTGTTCAGAGTTAAACTATCCATTTAAAGTTGTTGGTTGCATCTGTAGAAACAATATACACCACCTGACAAAAGTCTTGTCACCTATACAAGTTATAGGAACAACAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa7516
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000092591 Missense 109 305 2 6
ENSDART00000142848 Missense 109 303 3 7
Genomic Location (Zv9):
Chromosome 24 (position 21270518)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 20517647
GRCz11 24 20662066
KASP Assay ID:
554-4143.1 (used for ordering genotyping assays)
KASP Sequence:
GGAATTCACAGCATGCTTTGACAACTCTGCAGTGGCCATGGCAAACAGGC[C/T]GTACCCATTTCTGGAGTTTGGTAGGGTGATTAAAATKTTAATGGATGTAW
Long Flanking Sequence:
AAAAATGAGTTTTCTTATAGAAATAAAATAGTTTTTATTTTTTAAATCTAAATATGCACCATGTTTATGTGTCATAAGTTTTGGATGGAGAATAAACATATGCATTTAATGTAATTCTGTATATTTAAACAAATGTTTAGAAAATTCCTTAAACATAATAATAATAAAAATATATATATCATTAGTTCTATATCGTGTTATCCGGAGCTGCATTCAAGTGTTGCCGTATCAGATTCAGGAACTATAAGAAAGCGCCTGACATTGTTTGCCTCCATTCCAGAGTCCAAGATAAGCCAAGGAAACCGGTGGCCGCCCTGTGAAGTCATTTGTCAACTAATTGGTCTCTCTGTGTTGTAGCTTCCTCTCATGTGAGGGTGTGTCCTACATGAGCGTATGTGCCTGCACGCTCCCTGCTGCCACGGCCTTCTGCTTTTTGGAGGACCTGCGCTGGGAATTCACAGCATGCTTTGACAACTCTGCAGTGGCCATGGCAAACAGGC[C/T]GTACCCATTTCTGGAGTTTGGTAGGGTGATTAAAATGTTAATGGATGTATAGGCTTAAGATGATTTAGGAGTAATGGGTGTATTTTTTTATTTTTATTTTTAAATATTTCCCAAATTATGTTTAACAAAAAGGAGAAACTTTTACTTGTTTTATTTTGGCTAGACTAAAAGCAGTTATTATTTTTTTAAAACCTTTTTAAGGTCAAAATTATTAGCCCCTTCAGAGCCGTTACTCGCTGCAGAAGTTGGGACTTTCTCAACTTTTCAGATCGCTGTATGCAAATACACCAGCTCAGACATTGGCCTATTGCTGACTAATTTCATTGGCTGACGCTGCTATGATGATTGCGTTAGCCCACACTTCAGACACGCCCTCTGGAAGCCCTGTGTGAATTGGGCGTTACACATCAAGTTATTTATGAAATCAAAATTTGCAATATTTATTTTGCTTGCACACATTGTTAGATTTAAGTTGAAGTTTTTCTGTGAAAGGTAATCCC
Associated Phenotype:
Not determined