Busch Lab

ZMP

si:dkey-229d2.1

Ensembl ID:
ENSDARG00000056386
ZFIN ID:
ZDB-GENE-060526-261
Description:
Novel protein similar to vertebrate transmembrane channel family [Source:UniProtKB/TrEMBL;Acc:A2BFV3
Human Orthologue:
TMC1
Human Description:
transmembrane channel-like 1 [Source:HGNC Symbol;Acc:16513]
Mouse Orthologue:
Tmc1
Mouse Description:
transmembrane channel-like gene family 1 Gene [Source:MGI Symbol;Acc:MGI:2151016]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa11855 Nonsense Available for shipment Available now
sa807 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa11855
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000098446 Nonsense 557 720 17 20
ENSDART00000131515 Nonsense 511 733 13 17
Genomic Location (Zv9):
Chromosome 5 (position 27302864)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 25058162
GRCz11 5 25658315
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTGTTAATCTGTGTGTTTGTTTCAGGATGGGTGCATTCTACGCWCCATG[T/A]CTTCCAGCACTAAATCTTCTTCGTCTTCACGTGTCTATGTACCTGCAGTG
Long Flanking Sequence:
AACAGAATAAAAAAATTCACAAGGTTTTGATGGTGAGTAAATGGTGAGTACCTTTTAATTTTTGGGTGAACTATCCATTTACATTAACATCTCTTATTTCTACAGGAGTTTGTTCGTCTTATCATTTCTGACACAATGACGACTTACATCACTCTGCTGATTGGGGATTTTATGCGTGCCGTACTGGTGCGATTCCTGAACAACTGCTGGTGCTGGGATCTGGAGTATGGCTTTGTGAGTGAGTGTCCACCACACATAGCAACATATGCATCACGACTTCCATAATTACATTTGCTTTCTTCATTAGCCATCCTACTCAGAGTTTGATGTTAGTGGGAATGTTCTGGGGCTGATCTTTAACCAGGGAATGATCTGGTAAGAATTATCTCCATATTATGTTGCATTTGCTTTCTCCTTTTTCAGAAATGAAAACCAGCATATAATCAAATCTTTGTTAATCTGTGTGTTTGTTTCAGGATGGGTGCATTCTACGCTCCATG[T/A]CTTCCAGCACTAAATCTTCTTCGTCTTCACGTGTCTATGTACCTGCAGTGTTGGGCAGTGATGTGCTGTAATGTGCCTCAGGAACGCGTCTTCAAAGCTTCAGGCTCCAATAACTTCTACATGGCCATGCTGCTGGTCATTCTTTTTCTCTCTACATTACCAGCCATATACACCATTGTCTCCATTCCTCCCTCCTTCGACTGCGGGCCCTTCAGGTTCTGAAATCAATTAGTTTATATGCATTAGGAAAGTAGTGTTTGACATATTGGTCATTTCAAACATGTCAATTATTTTAAAGTATGGAGTAACAGAGGTGATGAAAAAGAAGTTGAGGGATGTTTCCAATTCCAAGTTTTGCAATCGGTAAATCTTAACACTAGGGTGCAGTAGAGGGCAAGTGTTAGAGGTTCTCACATCCTTATTTCTGCTCATAATTGTTAGTTATTTTATATAATAAATATTATTATATAACTATTACATATATATAACTATTAACTATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa807
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000098446 Nonsense 698 720 20 20
ENSDART00000131515 Nonsense 652 733 16 17
Genomic Location (Zv9):
Chromosome 5 (position 27298017)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 25053315
GRCz11 5 25653468
KASP Assay ID:
554-0712.1 (used for ordering genotyping assays)
KASP Sequence:
AAAAANTCAACAGGTCATGTTTAGTCATATATCCAATTTTGTATTGACAG[C/T]AAAATGAGGAAAACAAGAAAAAGAACAAACTTGCAGCCTTAAAAGCAGCC
Long Flanking Sequence:
TGTGTGATGGTTTGATTGTTGATGGTCACAGGCCTATGGAATCTAGTAAAATATTATGTACTGTCATCATGGCAAAAAAAAAAAAAATAAATCGGTTATTAAAACTATCATGTTTAAAAATATGTTGAAAAAATCTTCTCTCCGTTAAACAGAAATAAGGGAAAAATAAACAGGGGGACTTGTAATTCTGACCTCAAAATATTTAAAACACACACACACACACACACACACACAAAAACACACAAAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATTATGACAAAACAAACTAATTAATCTTGACCCAGCACTAATATATAAATAAATAAATTGCAGCGCTGAACTTTGATCTCTTTGCTACTGTTAAAAAAATCAACAGGTCATGTTTAGTCATATATCCAATTTTGTATTGACAG[C/T]AAAATGAGGAAAACAAGAAAAAGAACAAACTTGCAGCCTTAAAAGCAGCCAGTGACTTGGAGCAGGCAAGAAAAGCTGGAGAGCAACGCAGAAACAGCATCTCAGATTTGGGTGAGAGCACACAGGATGGGTCACAGCTCCCATCAGTCAATGCACTAGACAGCAGCTTGGAACCGATGCAGGGAAACTTTCCGTTAATGTTGAAGTGTCAATGTGCTTTGCTTAGACAACGGGCCACAGTCTTAAATCAACATGCCCCTGTTTCTTTATATAAGTTAAAGGTCTCTTTGTGTCTACTCTTTCTCAGGAGTGAATGAAGAGAATCCTGAATCTCACGTTTCCTCATCCCACACATCCAGACCCCCTGCGTCCCGTGGCCACACATCATCTGGACATCTTCCAGGTCACCCGCAGCAGCCACAGAAAAATTCGAAGAAGAGATAAAAATCACACATAGATTTCAGTGTGTTTGTCACAATCACAACATTTAGCACTTATTT
Associated Phenotype:
Not determined