Busch Lab

ZMP

cdh5

Ensembl ID:
ENSDARG00000075549
ZFIN IDs:
ZDB-GENE-040816-1, ZDB-GENE-040816-1
Description:
cadherin-5 [Source:RefSeq peptide;Acc:NP_001003983]
Human Orthologues:
CDH1, CDH13, CDH15, CDH2, CDH26, CDH3, CDH4
Human Descriptions:
cadherin 1, type 1, E-cadherin (epithelial) [Source:HGNC Symbol;Acc:1748]
cadherin 13, H-cadherin (heart) [Source:HGNC Symbol;Acc:1753]
cadherin 15, type 1, M-cadherin (myotubule) [Source:HGNC Symbol;Acc:1754]
cadherin 2, type 1, N-cadherin (neuronal) [Source:HGNC Symbol;Acc:1759]
cadherin 26 [Source:HGNC Symbol;Acc:15902]
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:1762]
cadherin 4, type 1, R-cadherin (retinal) [Source:HGNC Symbol;Acc:1763]
Mouse Orthologues:
Cdh1, Cdh13, Cdh15, Cdh2, Cdh26, Cdh3, Cdh4
Mouse Descriptions:
cadherin 1 Gene [Source:MGI Symbol;Acc:MGI:88354]
cadherin 13 Gene [Source:MGI Symbol;Acc:MGI:99551]
cadherin 15 Gene [Source:MGI Symbol;Acc:MGI:106672]
cadherin 2 Gene [Source:MGI Symbol;Acc:MGI:88355]
cadherin 3 Gene [Source:MGI Symbol;Acc:MGI:88356]
cadherin 4 Gene [Source:MGI Symbol;Acc:MGI:99218]
cadherin-like 26 Gene [Source:MGI Symbol;Acc:MGI:2685856]

Alleles

There are 8 alleles of this gene:

Allele Name Consequence Status Availability
sa21048 Essential Splice Site Available for shipment Available now
sa34151 Essential Splice Site Available for shipment Available now
sa10732 Nonsense Available for shipment Available now
sa21049 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa21048
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108766 Essential Splice Site 75 767 None 12
ENSDART00000111441 Essential Splice Site 75 767 None 13
Genomic Location (Zv9):
Chromosome 7 (position 45444542)
Other Location(s):
Assembly Chromosome Position
GRCz10 7 44117442
GRCz11 7 44456667
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCGTATGAGGAAACACGACCTAAAAACCCACCTGAAAAGATTGGAAAGG[T/C]AGACGGTCTTGTAAACAAATGGATCACACTTTAATTTGGAGAGATCCGTT
Long Flanking Sequence:
AATGGTCTTTTATATTTGACATATGTCTGTATTATTGATTATGTTACAGTGTGTTTGCATCATTGTTTTATGTTATTTCCCTCTTTAATAATGTAAAGCTGCTTTTGAAATTGCTGGTGTTTACATTTTTTATATAATTATGACTTTTGCAATAATGTCTTTCTTTCTTTCCAACATTAAAGTGTATGTACTGTATGGGTAAAGAAACCATCAACACTGCAGCACTACAAGGCATGAATTATCATACAGATATTTGTTTTGTTGTTTTCTGCAGATGATGAAACAGTGTGCCAGAAGGCAGATGACTGAGCCTGTCTTCAGGGTTGCTGTCCTGCTCGCATTATGTAGCCTCAGTATCGGAGTCGATGTCCACCAAGCTCAGAAAACACCATCTATCTCGAGTGCAGCACTTCAAAGACATAAAAGAGATTGGAAATGGGATAAACTGTATGCGTATGAGGAAACACGACCTAAAAACCCACCTGAAAAGATTGGAAAGG[T/C]AGACGGTCTTGTAAACAAATGGATCACACTTTAATTTGGAGAGATCCGTTCACACAATTAGCTGTGATTTCTTCCACAGACAACATTACATTTGCTGTGCAATAATAGTTAATTAAAGGATTAAAGGTGACATTGGATGCTCATTTTACACAAGTTGATTCTTTAGGTTCTTAGCATATCCCCAACAGGCACACAACGTCATATGATATAGGTATTTGATTATATTTTGGTCACGATGTCAGGGGAGCAAAGTCCAATGTCAGTTTAACGTCAAATAAAGTCATAATAAGACGTCAATACAACGTAAGTATAAGTATCAGTAGACGTTGATCTTTGGCTGATTTTAGGTTGTGAAATTAACTAACCAAAGTCATCTTAACATTATAATGTGGCATCCATACACCATCTAGGTCTAACAACAGTAGATGGTGATCTTTGGTTGGTTAAAATTTGTAGCATTAACTAACCAAAATCCAACATCATATTAATGTCAGAATGAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34151
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108766 Essential Splice Site 208 767 4 12
ENSDART00000111441 Essential Splice Site 208 767 4 13
Genomic Location (Zv9):
Chromosome 7 (position 45446520)
Other Location(s):
Assembly Chromosome Position
GRCz10 7 44119420
GRCz11 7 44458645
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GACTTCAAACTACTAAATGGCACAGACCTCTTCAAAATCAAGCCCAATGG[T/C]AACACCAAGACTGTATTTATTTGATTAGGAATGCAATATAGACAGTGATT
Long Flanking Sequence:
TTGCAAAGCTGGACCGGGAAACACAAAGTGTCTACAATCTCTCAGCTTCTCTCCTCAACATACATACTGGAGAGTTAGTTGACAAAGATGAATCATTTGTAATAGTAGTACTGGATATTAACGACAACATCCCCGTTTTCGATTCTGACCAATCTGGATCCATCAGCGAATCCTCTAGAGCAGGTAACAGACTAACACAAGCATGTGCTTGTCCATTGATGCATGTTGCTTTCTGTGTTGGCAGCATTTAGAATAATATGCAGTATTGACAAAAAAATTAACAAGAATAGACAGTTATCTGAATTAATGCAAGTAAAAAAAAAAGAATGTATCAAAAATGAAATTGTTTTTTTTTTTTCATTTTTCAAATACATTGACTTTGTAGGAACAACTATAATGAAAGTAAAAGCAACAGACGCTGATGATTCCTCCACTGAAAATGGAAGGATTGACTTCAAACTACTAAATGGCACAGACCTCTTCAAAATCAAGCCCAATGG[T/C]AACACCAAGACTGTATTTATTTGATTAGGAATGCAATATAGACAGTGATTTTACACCTATATAAAGTACATAAATAAAGTAACTGTCTAAAGTTACTTTTTTAGGTTTTATTTAAAGAAAAACTGATCTAAATTAACACATTTACAGACTTTTTTGTTTATTCATTTGAGCTACAACATACAAACAGACTGTTAGATTGAGATTGACTTAATTTAATTGTCATAAATTATTAATATGGTATTCAGTGGATGACAATATTTTGTAGGGGTTTTTTTTATTCAACTAAATAAATACACATTTGTCAATAAGCATGTATAAGATTTAATATTTCAGTACATTAAAATCAAGCACTTTTACATTTCGACTGAATTGAAACGGAGAACATCTTGATTTGTGTGCTTTGTTTGCCACTGTTTTTTTTTTTTTTTTAGGTGACCTAATAGCATTGAAAAGTGACCTCGACCGTGAGAAACAGAGTCAGTATCTTATTGCTGTTCAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10732
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108766 Nonsense 484 767 9 12
ENSDART00000111441 Nonsense 484 767 9 13
Genomic Location (Zv9):
Chromosome 7 (position 45449312)
Other Location(s):
Assembly Chromosome Position
GRCz10 7 44122212
GRCz11 7 44461437
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATTAATGACAATGCACCAGAACTAACCAATGGGAGCTACGTGTATGTCTG[T/A]GAGAATGATAAACCTAACACAGTAAGGAGTTGTTCTAATGCATTTCATAT
Long Flanking Sequence:
TGTATAGTGGAAGAATCACAGGCATGCTGAATTAGTGCTGGCTAAATGGTCTGTTAATCGTGAATTCGCTTCAAGAAACCCATAAGAATAGGACTTCTGGGAACTGTTTTGTTTGCAGTGCTAAATATTATGTATATTTGTATAATTATAATTGTTAAATATTATAATTTTGTTATTATATTATATATTTTTTTAATCTTTACTTTTTTTATACATTAATTACCAAAGAACCCTAACTAAACAATGGTAAGATGTAAACTTATGGAGTACAAATACTGTATGTTGGTAGAATACTATTGTTGGTACAATAGTAGCATGCTGTGTATGAGACAAGATTAATAATCATCATCCACAGATGATTTATATGTCTTTATATCTTATATATTAATTTTTTGCTCTGAATCCGCAGGTCTTAAATCCTCTACTATGGTTAGCCTGAAGGTTCTGGACATTAATGACAATGCACCAGAACTAACCAATGGGAGCTACGTGTATGTCTG[T/A]GAGAATGATAAACCTAACACAGTAAGGAGTTGTTCTAATGCATTTCATATGAACACATGTATAACGATTGACCTTTAGAAAATATCTGTATTCATTCATTGCTCTCTTGCAGATAATTGGGACTATTGGTGCCTCCGACAAGGATGAAAATTCAGGCAGGTTTCGCTTCACTCTTGCAAGAAAGAGCTCAAACTTTTCCCTCTATGATAACCAAGGTGGGTTACTAAAGATCATTCACAGAGTGCTTATAAATTGTTACTATAACTGTAATCAATCACATTATAGATTGCTTAATTTGAATAAGTGTGAATGCAGCTATCCCACTCTTAGTGTGCAAACAGACCAAAACCACTAAAAAGATGGATCTTGCTCTGTTTAATAGGAAGTCTGGATTGGTTTAATAGAAATATAAATGCAAAGCATATCAAATACATAAAAGTAGACCAAAAAACAACACAGGAAGTCACATATTATTACATATACGGATTTTTATTTATTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21049
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108766 Essential Splice Site 492 767 10 12
ENSDART00000111441 Essential Splice Site 492 767 10 13
Genomic Location (Zv9):
Chromosome 7 (position 45449424)
Other Location(s):
Assembly Chromosome Position
GRCz10 7 44122324
GRCz11 7 44461549
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAACGATTGACCTTTAGAAAATATCTGTATTCATTCATTGCTCTCTTGCA[G/A]ATAATTGGGACTATTGGTGCCTCCGACAAGGATGAAAATTCAGGCAGGTT
Long Flanking Sequence:
TTGCAGTGCTAAATATTATGTATATTTGTATAATTATAATTGTTAAATATTATAATTTTGTTATTATATTATATATTTTTTTAATCTTTACTTTTTTTATACATTAATTACCAAAGAACCCTAACTAAACAATGGTAAGATGTAAACTTATGGAGTACAAATACTGTATGTTGGTAGAATACTATTGTTGGTACAATAGTAGCATGCTGTGTATGAGACAAGATTAATAATCATCATCCACAGATGATTTATATGTCTTTATATCTTATATATTAATTTTTTGCTCTGAATCCGCAGGTCTTAAATCCTCTACTATGGTTAGCCTGAAGGTTCTGGACATTAATGACAATGCACCAGAACTAACCAATGGGAGCTACGTGTATGTCTGTGAGAATGATAAACCTAACACAGTAAGGAGTTGTTCTAATGCATTTCATATGAACACATGTATAACGATTGACCTTTAGAAAATATCTGTATTCATTCATTGCTCTCTTGCA[G/A]ATAATTGGGACTATTGGTGCCTCCGACAAGGATGAAAATTCAGGCAGGTTTCGCTTCACTCTTGCAAGAAAGAGCTCAAACTTTTCCCTCTATGATAACCAAGGTGGGTTACTAAAGATCATTCACAGAGTGCTTATAAATTGTTACTATAACTGTAATCAATCACATTATAGATTGCTTAATTTGAATAAGTGTGAATGCAGCTATCCCACTCTTAGTGTGCAAACAGACCAAAACCACTAAAAAGATGGATCTTGCTCTGTTTAATAGGAAGTCTGGATTGGTTTAATAGAAATATAAATGCAAAGCATATCAAATACATAAAAGTAGACCAAAAAACAACACAGGAAGTCACATATTATTACATATACGGATTTTTATTTATTTTTTTTATCCTTAAATCAGGTCATTGAAAACAGTAAAAATTAAGAAATGAACTTCATGTGTGAGCACAGCGTAAAATTTAAATCCATATTCCCTGTCCTTCTGCTCATCATAGT
Associated Phenotype:
Not determined