Busch Lab

ZMP

pcdh18b

Ensembl ID:
ENSDARG00000052494
ZFIN ID:
ZDB-GENE-080804-1
Description:
protocadherin 18b [Source:RefSeq peptide;Acc:NP_001108571]
Human Orthologue:
PCDH18
Human Description:
protocadherin 18 [Source:HGNC Symbol;Acc:14268]
Mouse Orthologue:
Pcdh18
Mouse Description:
protocadherin 18 Gene [Source:MGI Symbol;Acc:MGI:1920423]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa10255 Nonsense Available for shipment Available now
sa22533 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa10255
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074362 Nonsense 326 1161 1 4
Genomic Location (Zv9):
Chromosome 14 (position 44410366)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 41806312
GRCz11 14 42173566
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGCCAYATCACTCTTATTAAGAAAGTTGMCTACGAAACCACGTCTTCATA[T/A]GAAATAGATGTGCAGGCKCAGGATATGGGTCCCAACTCCATTCCAGGCCA
Long Flanking Sequence:
ACACGCTTCCCTCTGGATAGCGCGGTAGACCCGGATGTCGGGGAAAACGCGCTGCACACCTACTCGCTCACTCGGAATAACTTTTTCAAAATCGATATCAGGACGCGAACGGACGGCGCAAAGTACGCGGACCTTGTTGTAATGAGAGAACTTGACAGGGAAACACAGTCCAGTTATCAACTACAACTCACAGCTTCAGACTCTGGCGTACCGCCGAAATCTGGCTCAACTCTGCTTAAAATCAGCATATCTGATTCCAACGATAATAGCCCGGCGTTTGACGAGCAGGCTTACGTGGTCAACCTCCTGGAAAATTCATCACTGGGGACGCTCTTGGTAGACTTGAACGCTACAGACCCGGATGAAGGCAATAATGGCAAAATCGTGTATTCTTTCAGCAGCCACGTGCCCCCCAAAATCCTAGAGACTTTCAAAATTAACCCAGATAATGGCCACATCACTCTTATTAAGAAAGTTGACTACGAAACCACGTCTTCATA[T/A]GAAATAGATGTGCAGGCTCAGGATATGGGTCCCAACTCCATTCCAGGCCACTGTAAAATAATAATCAAAGTGGTCGACGTCAACGACAACAAGCCAAAAATCAACATCAACCTCATGACTCAGGGGAAAGAGGAGGTGGCCTACATCTCAGAGGCCTCCCCTGTTGATACCTTCATCGCATTAGTGCGAGTGGATGACAGTGACTCGGGTATAAACGGTGAGGTTGTGTGCCGTCTCCATGGCCATGGGCATTTTCGCCTGCAGAAGACCTACGAGAACAACTACATGATTCTCACAAATGTGTCTCTGGACCGTGAGAAACGCTCTGAATATAGCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATCAAACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTTGAAAAGAGCCGATATGAAATCTTCAAGTCTGAGAACAATTCCCCTGGGGCATACCTGACGTCAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22533
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074362 Nonsense 455 1161 1 4
Genomic Location (Zv9):
Chromosome 14 (position 44410751)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 41806697
GRCz11 14 42173951
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATC[A/T]AACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTT
Long Flanking Sequence:
TGTATTCTTTCAGCAGCCACGTGCCCCCCAAAATCCTAGAGACTTTCAAAATTAACCCAGATAATGGCCACATCACTCTTATTAAGAAAGTTGACTACGAAACCACGTCTTCATATGAAATAGATGTGCAGGCTCAGGATATGGGTCCCAACTCCATTCCAGGCCACTGTAAAATAATAATCAAAGTGGTCGACGTCAACGACAACAAGCCAAAAATCAACATCAACCTCATGACTCAGGGGAAAGAGGAGGTGGCCTACATCTCAGAGGCCTCCCCTGTTGATACCTTCATCGCATTAGTGCGAGTGGATGACAGTGACTCGGGTATAAACGGTGAGGTTGTGTGCCGTCTCCATGGCCATGGGCATTTTCGCCTGCAGAAGACCTACGAGAACAACTACATGATTCTCACAAATGTGTCTCTGGACCGTGAGAAACGCTCTGAATATAGCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATC[A/T]AACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTTGAAAAGAGCCGATATGAAATCTTCAAGTCTGAGAACAATTCCCCTGGGGCATACCTGACGTCAGTGGTGGCCACCGACCCAGATTTGGGGCCTAATGGACAGGTGACCTACTCAATTGTGGAAAGCCAGGTCCAGGGCAGCTCCATTTCAACTTATGTTACTATTGACCCATCCAACGGGGCTGTGTATGCACTCCGAAGCTTTGATCGGGAAGAAGTTGGCCGGCTTTCGTTCACCGTGCAGGCGCGGGATGGCGGAAGCCCAGCCTTTCTGAGCAGCAACACCACTGTGTTGCTCACCATCCTAGATGAAAATGACAACCCTCCTATTATTGTTGCCCCACTGCTAAGTAACCACACAGCTGAGGTACCATTATGGCGGCACGCCGAGTCTGGTCATCTGGTGACAATCATTAAGGCGACAGATCGTGATGCAGGAGCCAACAGCGAG
Associated Phenotype:
Not determined