ZMP

si:dkey-87m23.1

Ensembl ID:

ENSDARG00000012593

ZFIN IDs:

ZDB-GENE-041105-6, ZDB-GENE-081104-44

Description:

Novel collagen protein [Source:UniProtKB/TrEMBL;Acc:B8JL13]

Human Orthologue:

COL5A1

Human Description:

collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:2209]

Mouse Orthologue:

Col5a1

Mouse Description:

collagen, type V, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88457]

Alleles

There is 1 allele of this gene:

Allele Name	Consequence	Status	Availability
sa23852	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa23852

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000027425	Essential Splice Site	793	2024	15	65
ENSDART00000139598	None	None	126	None	2

Genomic Location (Zv9):

Chromosome 21 (position 6595655)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	21	6716747
GRCz11	21	6638998

KASP Assay ID:

2261-5206.1 (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CTCGTGGTCCAATGGGATCTGCAGGCCCTACCGGAAAGCCTGGTAGAAGG[G/A]TAGGTTTGCATTTCGCTGAAATCCCCCAGGCTGGTGTGATTGTTATTATA

Long Flanking Sequence:

AAATAATGTACCAAAACAAAACTATACAAAACAAAAATATCTAGAGATATTTAAATGTTAATATAATTCCTATAATATACAGTGCATATATATTTTATATCTAAATATAAATAAAACATTCATAACAAAAATTAAACAGATAAAACATTGTAATTAATCGTTGCCCAGTGCTATTTTTATTTAATAATCCTATCGCTGCAGCTATTAAACTATCCCTATCTTTTTTTTACAAAACTATTTAATCACTTTTGTATAATAAACATCATTAAAACCTCATTAAACCTAAATTTGCTGCAATATAAAGATGTTTCCAGTCACTACCCTTTTATTTTCATTTTACCACTACCCACAACTACCCTTGGCTCATTTGTCATTTAAGGGGAGAGGCTTATTGATAATGTAGGTCGATTACACAAAATTTACAGACCTGTTTTTGTGTGTTTTAGGGTCCTCGTGGTCCAATGGGATCTGCAGGCCCTACCGGAAAGCCTGGTAGAAGG[G/A]TAGGTTTGCATTTCGCTGAAATCCCCCAGGCTGGTGTGATTGTTATTATATAGTAATGATGTTTTGTGCGTTTTTAGGGTCGACCCGGCTCAGATGGAGCCAGAGGGATGCCTGGACAGACAGGACCCAAGGTAAACCTAGAGAGATTTACAATAAACAGACTGCTTTTAGCATGACACACAATGATGAATGTGCACAGTAAGATGAAAGAAAGGAAGCAGATGGATTATAATTGGGAATAATTGTCTCTAAAAATGTAACTGTCCTGTAATTAGGAACTGTTTTGTGTCTGTGTCTCACAGGGAGATCGAGGATTTGATGGTCTCGCTGGTTTGCCCGGTGAAAAGGGACACAGGGTAAACATGGTTTTTATTTTTCATTTTTTAATTTAATTTTTTTCTTTTATTTATTTATTTTATTTTAATTATTTTTTATTTTTATTTTTTATTTAATTTTAATTCATACAATAAAAATTATTTATGATTATTTTAAGCAGGGTA

Associated Phenotype:

Not determined