ZMP
si:ch211-15e22.3
Ensembl ID:
ZFIN ID:
Description:
polypeptide N-acetylgalactosaminyltransferase-like 6 [Source:RefSeq peptide;Acc:NP_001139074]
Human Orthologue:
GALNTL6
Human Description:
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 [Source:HGNC
Mouse Orthologue:
Galnt10
Mouse Description:
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 Gene [Source:MGI
Alleles
There are 6 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa39647 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa10501 | Essential Splice Site | Available for shipment | Available now |
| sa18048 | Nonsense | Available for shipment | Available now |
| sa5940 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa25626 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa39647
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000058574 | Essential Splice Site | 128 | 600 | 3 | 12 |
| ENSDART00000139448 | Essential Splice Site | 128 | 600 | 4 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 38273882)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 37145338 |
| GRCz11 | 1 | 37864516 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGCAACAATATCGCTCTGGATCGCTCGCTTCCTGACATCCGACATCCAAA[G/T]TGAGTAGAGCTGATTCTTCACCGCCTCCAGAGCTGCACAGCTTGAGCGAG
Long Flanking Sequence:
ATTTTCACTTGAAAAAATTCCTTCAAGTAATGAAAAGTAGGGTTTCCATCAACTTTGGCAGGCAGAGGTAGCGAACAGACCATAATGTGCTCTGCAGAGCCAGCAACTCCGTCAGCATGTTAAGCCTTAGTATTGGAGTGTGTCTGGTCAGCATTCACTGGTTAAGCTGCTTCAGCTGTTCAGTCATAAAATAATAATAATAATGAAATAAACTGTCAGTTCTCGCAGTGGTGCTTTCTATCTTTGGAGTGCCGATGTGTGTCATTGTTAGTACACACATGCTCACCTTGCCAACAATCCTGTTCGTGCTCTGAATGCTTATTGATGTCTGACTGCATCTGTTTTATTTTGGTTTTTTTAGGAAAAGGAGAGCATGGAAAGCCATACCCGCTTGTTGAGGATGAGTGTGATGACTCTGTGTACAAAGAGAATGGTTTCAACATCTACGTCAGCAACAATATCGCTCTGGATCGCTCGCTTCCTGACATCCGACATCCAAA[G/T]TGAGTAGAGCTGATTCTTCACCGCCTCCAGAGCTGCACAGCTTGAGCGAGACATCAGTGTTTTAACCATCCGTGACAGGCCACATTTGCGCAATGTGTTTTAATTAATGATTTTGTCCTAAATGAGGAATGAATCTAATTAGGATTAATTAGCTTGGTGATTTCAAGGCTGATAGATTTTTTTTTCTATACATTTGCTGTCATATAAAAGCAAGTGAATACAGGCAAAATATTTAATAAAAAAGGTTGCTCTGTACTGTAAATAAACCTGCTTTTGTGACTTGTGTCATTTTAGGAGTATGAAACTATATGTTGTATAAAAATAATATATAGGAGTACAGTGCATCCACAAAGCATTCATAGCGCTTCACTTTTTCCACTTTTTTTTTGTTTTTTTGTTACAGCCTTATTTCAAAATGGATTAAATTTATTTTTCTTCCACAAAATTCTACAAACAATACCTCTTAATGACAATGTGAAAAAAATAGTTTTCTAATTGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa10501
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000058574 | Essential Splice Site | 246 | 600 | 5 | 12 |
| ENSDART00000139448 | Essential Splice Site | 246 | 600 | 6 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 38470186)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 37341642 |
| GRCz11 | 1 | 38060820 |
KASP Assay ID:
2259-0828.1 (used for ordering genotyping assays)
KASP Sequence:
CTGGATTCTCATTGTGAAGCCAACATCAACTGGCTGCCACCCTTGCTTGG[T/C]GAGTCCAGWTATACAGTATATATNAAAAAAGAAAGAAAAATACCAACCCTG
Long Flanking Sequence:
ACTGAATGCAACTTAAGATAATATATTAACGCTGGGTCTGTTTGTCCTGATTAATATTCTAGAAACAGAGGACATTCACCGATTCATTTAAGTGTTAACAGCGGTGGAATCTTACGGGGTGTTAAACATTAATGCCCTTGAATTGGGCCGGCAGAATGGAGCAACAATTCGGAGATTAAATTACCGCACCACTGCACCGCGATCAATCTCCCTTCCCTTTAACTGAACACAAACCAAGACTTATGCCATTTCCTTTTTTGTATCAAGTGTGTGCTTTCTAGTAATTTTTACTCTGTTTTTTTTTTTTTTTCAGAGCACCTGAAGGCACATCTGGCGGAGTACATGTCCAGATTTCCTAAAGTCCGTATTGTGCGCACTAAGAAGCGAGAGGGTCTAATCCGCACACGACTTCTGGGAGCATCTGTGGCCAGAGGAGAGGTCCTGACTTTTCTGGATTCTCATTGTGAAGCCAACATCAACTGGCTGCCACCCTTGCTTGG[T/C]GAGTCCAGATATACAGTATATATAAAAAAGAAAGAAAAATACCAACCCTGGCAGCAACATGTACCCACAGATTTCTCTATTTTTCATGCCTATCACTGTGAGAAAACACAGGCCGCTGAAAATCCCACGGAATGTTCGTTGTGCTTATCTTTCTCTTTTGAATCTAGCAATTTCAAAATTCAATTGCTTTTTCGCATCCAAAGTCTTTGCCCCTGCAGTTGGTTGATTAAAAAAACAAAACGAATCCTCCATCTCCTTGTTTCTTGTCCGTGGCTTGTTCCTTTTATCACTGGAAAAAAAAAGCTTTTTTTATTTTCAGACTCATTGAGGATAGAATCTATAGTGTTCCCCACTGCGCCGCATAAGCATTGCAAATCCAGACAGCTTTTGATGTGCGTGGTCCTGTTATAAGATCTTTTAAAATGTCTACTTCAGCAAATGTTGCGCACATATTGACGCTCATTGATCTGATACCAGCTCATAGGCTTGATCTGTCTGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18048
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000058574 | Nonsense | 543 | 600 | 11 | 12 |
| ENSDART00000139448 | Nonsense | 543 | 600 | 12 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 38535158)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 37406614 |
| GRCz11 | 1 | 38125792 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCACGCTCTATGACTGCCATGGCATGAAAGGCAACCAGCACTGGAGCTA[C/A]AGGAAGGYAAAGCAAATWATCTGCTTGTCAATATTTTGTGACAGAAAGAA
Long Flanking Sequence:
AGACTAACCTTGATGAATCCCTCTGCAACTTAAGGATGCCATTCAACAAATCTATTTCTCTATTTCTCTGTCCACAGATTCGTAACGCAGCATCTGGCTTATGCGTCGACTCTAAACATGGCTCTACAGGCACTGAGCTCCGATTGGACAATTGTCTGAAAGAGGGCGCAGAGCGAACATGGGCACATGAGCAGGTACAATAATCTGCAATGCACATCACATATTTCAGTCAGAAATTTTCAGGTCTGAACCGCATTAGATGGCTGACTATGAATGTACACTCTACACTGATATGCGTGTTGACATGATACAGAGCTTCTTGAAACTGAGAGTATTGCTGTTCCCTGTGGTGGACAGATTTTCACGTTTGGCTGGAGAGAGGACATCAGGCCTGGAGATCCACTGCACACCAGAAAATTCTGCTTCGATGCTATTAGCCAGAACAGCCCTATCACGCTCTATGACTGCCATGGCATGAAAGGCAACCAGCACTGGAGCTA[C/A]AGGAAGGTAAAGCAAATAATCTGCTTGTCAATATTTTGTGACAGAAAGAATTTCAGGTTTAAGTCTATACTTATTTGAGTGGAAAAGCTCAACTCCACTCAAATCCCAATAGCATCCATGACCACTGTTTAGTTGTGTTACAAATTAAAGCAAATCTTTTACAGTTTATAATGTAACAACAGTTTCTGGATAAAAGATTAAGCAGTGTCTGACAAAAAGCCAACACCAAATAAAGCTGACTTCTCTCGATGTGGAGGAGCAGTGACTCTACTCCGAGCTCCTCCCACGTGACAGAGTTCCTCGCCCTGTCTATAAGGGTGCGCCCTGCCACCCTTCGGAGGAAACTCATTTCAGCCGCTTGTATCCGAGATTTTGTCCTTTCGGTCATGACTCAAAACTCATGACCATAGGTGCGAGTAGGAACGTAGATTGACCGGTAAATCGAGAGCTTTGCCTTTCGGCTCAGCTCCTTCTTCACCACAACGGACCGGTACATCGAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa5940
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000058574 | Essential Splice Site | 545 | 600 | 11 | 12 |
| ENSDART00000139448 | Essential Splice Site | 545 | 600 | 12 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 38535166)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 37406622 |
| GRCz11 | 1 | 38125800 |
KASP Assay ID:
554-3851.1 (used for ordering genotyping assays)
KASP Sequence:
CTATGACTGCCATGGCATGAAAGGCAACCAGCACTGGAGCTACAGGAAGG[T/C]AAAGCAAATWATCTGCTTGTCAATATTTTGTGACAGAAAGAATTTCAGGT
Long Flanking Sequence:
CTTGATGAATCCCTCTGCAACTTAAGGATGCCATTCAACAAATCTATTTCTCTATTTCTCTGTCCACAGATTCGTAACGCAGCATCTGGCTTATGCGTCGACTCTAAACATGGCTCTACAGGCACTGAGCTCCGATTGGACAATTGTCTGAAAGAGGGCGCAGAGCGAACATGGGCACATGAGCAGGTACAATAATCTGCAATGCACATCACATATTTCAGTCAGAAATTTTCAGGTCTGAACCGCATTAGATGGCTGACTATGAATGTACACTCTACACTGATATGCGTGTTGACATGATACAGAGCTTCTTGAAACTGAGAGTATTGCTGTTCCCTGTGGTGGACAGATTTTCACGTTTGGCTGGAGAGAGGACATCAGGCCTGGAGATCCACTGCACACCAGAAAATTCTGCTTCGATGCTATTAGCCAGAACAGCCCTATCACGCTCTATGACTGCCATGGCATGAAAGGCAACCAGCACTGGAGCTACAGGAAGG[T/C]AAAGCAAATAATCTGCTTGTCAATATTTTGTGACAGAAAGAATTTCAGGTTTAAGTCTATACTTATTTGAGTGGAAAAGCTCAACTCCACTCAAATCCCAATAGCATCCATGACCACTGTTTAGTTGTGTTACAAATTAAAGCAAATCTTTTACAGTTTATAATGTAACAACAGTTTCTGGATAAAAGATTAAGCAGTGTCTGACAAAAAGCCAACACCAAATAAAGCTGACTTCTCTCGATGTGGAGGAGCAGTGACTCTACTCCGAGCTCCTCCCACGTGACAGAGTTCCTCGCCCTGTCTATAAGGGTGCGCCCTGCCACCCTTCGGAGGAAACTCATTTCAGCCGCTTGTATCCGAGATTTTGTCCTTTCGGTCATGACTCAAAACTCATGACCATAGGTGCGAGTAGGAACGTAGATTGACCGGTAAATCGAGAGCTTTGCCTTTCGGCTCAGCTCCTTCTTCACCACAACGGACCGGTACATCGACCTTATTAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa25626
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000058574 | Nonsense | 580 | 600 | 12 | 12 |
| ENSDART00000139448 | Nonsense | 580 | 600 | 13 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 38540458)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 37411914 |
| GRCz11 | 1 | 38131092 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACGATAAGCGGATTTTCATGAACAAGTGTGATCCCAAGTCTGAAACACAA[C/T]AGTGGATCTTCCAGAAAGTCAACGCCACCGTTCTGGACAAATTCAACAGC
Long Flanking Sequence:
ATCTTAAATTTATTTTAAGCATGCCATAAAATACTGATCTTCATGTAAGTGATTTCTCCCCACTAAATTCAAATGGTTTTATCTGAATATATCTAGATTGATCAAATTTCCTGAAGAGATACTGCCCTTTACCATCTCCCGTCCATCATTTCTCAATCTCTCAGGTTCCACTACCAACCTTAAGGCATGAAATGAAGTCAGCTTTTTCTGATTAGCTTATTCAGTGTTTTGCTTCTTCAGTTTTCACCCCTGTAATCTGACTGAAGGCTAGCGGCAGATAAAGCAGGATTAAACCTCCGCCAGAGTCACGGTGACTGTTTTTTGCTTATTTATTTGTATTTCACCCTCTTCCCCCCTCTCTCTCTCTTTTTCTCCTTCCCATCTTCTTCTCACTCCAGGATAAGTCTTTGTACCACCTGGTGAGCAGCGGTTGCATGGACTGCAGCCCGAACGATAAGCGGATTTTCATGAACAAGTGTGATCCCAAGTCTGAAACACAA[C/T]AGTGGATCTTCCAGAAAGTCAACGCCACCGTTCTGGACAAATTCAACAGCGCCGCCAGCTCTTAGGACCTGGGGTTGTGGTCAAGCCAATTACAAAGAATAATACTAATCTGGCTTCCACACATAAACACACCTCCCACAATCCTTCACGTGGGCCGGGATGTTCTTGGTTTCTGGTTCCTCTCGAGGTTCTACTGAAGACTGAGCAAAAATGAGGGGACTGGAAACAACCGAGAGACTCAAGGCTGGTGGAAAACATTTCCACAATGAGCACCTTGCTGGTCGAGGAGAATACAGACAGCCTGGACTCTCTCACGGGGGTCTAAATTGGGCCCTAACCTTGGGAAGAAAAAAAAAACAGAGCAGCTTTAGGACTTCGGAAATGGAGTCCAGTGAGAGACTGTTCTGTAGCAGATTGCATGGGGGATTTGTACAAAAAGCAGAAACTGGAAAGAGTTTGCTCCTGGTTTTTATTTTTATTTAATTTGTATGGCTATTTAT
Associated Phenotype:
Not determined