Busch Lab

ZMP

pdcd6ip

Ensembl ID:
ENSDARG00000025269
ZFIN ID:
ZDB-GENE-040426-2678
Description:
programmed cell death 6 interacting protein [Source:RefSeq peptide;Acc:NP_998525]
Human Orthologues:
AC011767.1, AC055876.3, PDCD6IP
Human Description:
programmed cell death 6 interacting protein [Source:HGNC Symbol;Acc:8766]
Mouse Orthologue:
Pdcd6ip
Mouse Description:
programmed cell death 6 interacting protein Gene [Source:MGI Symbol;Acc:MGI:1333753]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa5928 Nonsense Mutation detected in F1 DNA Not yet available
sa43338 Nonsense Mutation detected in F1 DNA Not yet available
sa9404 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa5928
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028592 Nonsense 576 873 13 18
ENSDART00000122296 None None 465 None 12
ENSDART00000135164 Nonsense 569 866 13 18
Genomic Location (Zv9):
Chromosome 19 (position 44471185)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 43298953
GRCz11 19 42868390
KASP Assay ID:
554-3779.1 (used for ordering genotyping assays)
KASP Sequence:
AGCTGGCGCAACTGGATGAGGTCAAGAGGGAACGAGAAGTTCTGGAAGGA[G/T]AGGTGAAGTCAGTGACCTTTGACCTGACGGCAAAGTTTCTTACAGCACTG
Long Flanking Sequence:
CAATTTAATTATTAGTTAAAAATGTATTCAATAAAAACCTGTTTAATTTTCATAAAAAACTGTTGAAAGTGATTCAAATATTTAGATACAGTCATTCATTCAATGCAATTACTCATTTTTAAAGTTAGTCATGGTACAATTTCTTGTGCTTGAGTGCTTTCAAAATCATTATACCGTCACAGGCATCAAAAGCACATACAAATGACAAGTTATAATACAGACTGAAGATTGCAGATAGTGTGATGTGACTATTGCGAATGATCACATTGCGATATCAGTGCTGAAACGATATATTGAACAACCCTAGTATAAACAATTATACTATTAAAATAGGTGTTAATATTAAAAATGCCTAAATGGTATATAACACCAAAAAACACACACTAACCAAGCTGTTATACTAATGCCAAGTCTCATCTCCTGCACAGGTGGTAAATGTGTTGAGGTCTCAGCTGGCGCAACTGGATGAGGTCAAGAGGGAACGAGAAGTTCTGGAAGGA[G/T]AGGTGAAGTCAGTGACCTTTGACCTGACGGCAAAGTTTCTTACAGCACTGGCTCAAGATGGCGCCATCAATGAGGAGGTCATGACCAGCAGTGAGCTTGACGCTCGATACGGCTCACACAATCAACGCGTTCAACAGAACTTACGCAGACAGGAAGAGCTGCTGTCACAGATACAGGTGCGTAATAAATAGATTATAAATAGCGTAATAAATCTCTTAAATAGATTCCGAGGTTACTTTATACATTACAAATATTCTGCTTGCATTGAACCTGAAATAATCATTATTAGTTAACTAAAAAAAGGTTTACGCAAATTACAAGAGTGTTCACAGTGAGTTATGTTTACATTAATATAATCTCTGCTGGTAAAAACTAGCCCAGAACCCCTTCTGCTGTTTAAAAACTACCCTTGAGCACCATCTGCTGTTATAAACCAGCCTAGAACGCCATTTGCTGTTAAAATCTAGCCTAGAACGCCATCCGCTGTTTAAAAACTATCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa43338
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028592 Nonsense 799 873 17 18
ENSDART00000122296 None None 465 None 12
ENSDART00000135164 Nonsense 792 866 17 18
Genomic Location (Zv9):
Chromosome 19 (position 44475284)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 43303052
GRCz11 19 42872489
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCGCCCCAATGGCTCCCGGCAGCTCTAATCCTCCACCTGTTGCACCCACT[G/T]GACCCTCACAGGCTCAAGGGCCACCATACCCCAGTTATCAAGGCTACCCA
Long Flanking Sequence:
TTATTATCATTAAACCAGCACAAATATACACTCAGGAAATATTAAATGTTTTACAAAAAAACATTAAACACTCCTGGTGTCCACAGAATAACAAATCATAATGGCTTCAAAATCCTCATTTCTCACCAGGCAAATGATTGGCTGATAATTGTCTCATTTTACAGGGAGCTGCAGCAGAGTATTGCTCGAGAGCCAAGCGCTCCTTCATTCAGCGTCCCGTCATACCAGTCCAACACCCCTGCCCCTGCAGGAGGCCCGACCCCTGCGCCCAGGACTGTGTTTGTGAGTTCACACGCACTGATGACAGATATAACACTTGATCGCATGCAATAGTCTGATGTATATCTGTTTTCCAGTCACAGCAGCAGCCTCAGGCTAAGCCCCAGCCGCCGGCGAGACCCCCACCCCCCAGCATCGCTCCTCAGGCAGCCAGTGCTGCCGTTCCAGTCAGCGCCCCAATGGCTCCCGGCAGCTCTAATCCTCCACCTGTTGCACCCACT[G/T]GACCCTCACAGGCTCAAGGGCCACCATACCCCAGTTATCAAGGCTACCCAGGGTAAATAAAGACATTCAAGAGTGCATGTGTCCTCAGTGTTAGGTACAGTTGAAGTCAAAATTATTAGCCCTTCTGAATTATTAGCCCCTTTGAATGTTTTTTTTTCTCCAATTTCTATTTAAATTAATTGGGTTAATTAGGCAAATTATGGTAATGAGGCAAGTCATTGTATAACAGTGGTTTGTTCTGTAGACAATTGAAAGAAAACATTGCTTAAGAGAGCCAATAATATTAACCTTAAAGTGGTTTAAAAACTGCTTTTATTCTAGCCGAAATAAAACAAGACTTATAAGGCAAGGCAAATAAGTTTTCAACTCGATGGGTGTTATAGTCTATGCTTTAAACTAGCGTTTCTCAACCATGTTCCTGAAGGACCACCAGCTCTGCACATTTTCCATGTCTCTTTAAGCATACACACCAGATTCAGATCATCAGCTCATTAGCAGAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9404
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000028592 Nonsense 839 873 18 18
ENSDART00000122296 None None 465 None 12
ENSDART00000135164 Nonsense 832 866 18 18
Genomic Location (Zv9):
Chromosome 19 (position 44476418)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 43304186
GRCz11 19 42873623
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCYTATAATCCCTATGCATACGGGCAGTATAATATGCCCTACATGCCCTA[T/A]CAAGCTCAGGGCCAGGCTGGATACCCTGGAGCCCCTGCAAYACAGCAACC
Long Flanking Sequence:
AGGGTGTAAATACACAGTACAGTTACGATCTTATTGCCAAATTATATTGTTATAATAGCATAATATAGGCCTTCAGTGATTTCCTGAAGATAAATGACAAAAAATAACACAACTGTAATAAGTACAGCAGGCGCGATCGATCATCTGATCTCATATGAGGCAAGAGCTCACGATGACATATGATGGCCTGTGCAGGTGCTGTAGTGATGTCCCAATTTCTTAGGGGTAAATTTTAAAGCTCTTCCCCTTCACACTCTTTTTCAAGGGCCAAAGGCAAGAGGAAGGGGTACAAAAATAGAACTGGGATTGGGCCTTAATAATTACTACTTAATCAAATTTTTCAGCAGCAGAAAGCTCACTAGGTTTTACAACACTCTGCATATTACAGAAGCATGACTTTTGTATATTTCTCTTTTTCTCCTCTCTTTTAGGTATTACCAGATGCCAATGGCCTATAATCCCTATGCATACGGGCAGTATAATATGCCCTACATGCCCTA[T/A]CAAGCTCAGGGCCAGGCTGGATACCCTGGAGCCCCTGCAACACAGCAACCCTACCCCTACCCTCAACAACCACCCCAACAACAGCCCTATTACCCCCAACAGTAGAGCAACAACCTCCGCGACTACAGCCACACTCATTCCTGTAAACTAGCACTCTTCTTACTGCACTTATCTATTAACACTCCTGCACTCACACGCACTCGATCTCTACTTAACATCCCATTGGATCTGGGCGGGGTTTAAGACACAAGCCACACCTTTTATACAGTAGGGCGGAGTTTAGAATGTAAGCCACACCCTTTAAATAGGAGGGCAGTTTAGAATGCAAGCACTGCGTCTTCTATGGGAGGGTGGGGTTTAGATCTTAAACCACACCCCTTGTATAGGAGGGCGGAGTTTAGAATGCTAGCTCTGCCTCTTGTTTGGGGGCGGGTTTAGACAATAAATCACACCCCTTGTATAGAAAGGCGGGGTTTAGAATACGAACTCTGCCTATTGTA
Associated Phenotype:
Not determined