Busch Lab

ZMP

slc35c2

Ensembl ID:
ENSDARG00000037517
ZFIN ID:
ZDB-GENE-030131-2202
Description:
solute carrier family 35 member C2 [Source:RefSeq peptide;Acc:NP_997808]
Human Orthologue:
COL20A1
Human Description:
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670]
Mouse Orthologue:
Col20a1
Mouse Description:
collagen, type XX, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1920618]

Alleles

There are 10 alleles of this gene:

Allele Name Consequence Status Availability
sa37677 Nonsense Available for shipment Available now
sa10366 Nonsense Available for shipment Available now
sa18513 Nonsense Available for shipment Available now
sa24303 Missense, Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa37677
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054641 Nonsense 733 1816 18 51
ENSDART00000102963 Nonsense 733 1816 18 50
ENSDART00000109899 None None 362 None 10
ENSDART00000132920 Nonsense 733 1897 18 50
ENSDART00000140219 None None 187 None 6

The following transcripts of ENSDARG00000037517 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 23 (position 20767496)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 20552603
GRCz11 23 20478946
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGGCAGAGTTGAGGCAGGTGGCGTCTGAACCTCTGGAGCTGAATGTGTA[T/G]AAGGTGAATGATTTTCCTCTGCTCAGTAAACTGGTGGGAAAACTAGCACG
Long Flanking Sequence:
GTTTAGTTTCAAGTGTTGTTGACTCATTTAAAAGTACAAATTTCAAGCTTATTTGTATATATTTCTTATGTCTGTGAAGCAAGTATTCGCTGAGATTGCAGTGTGTTTGTTGACCACAAAAACTGTTGTAAAAGCACACGCCTGGTCCAAGATTCTCCTCTGGAGAAACATCAGTCTATAGCGATCAATGATTGGTTCTTGTTTTAGTAGGCGGGGCTTCATTCGCAATATTGACCATTACATTTTTCACCATTCAAAACTGTATGAGTGACATATCTTGTGTATTCTATAGTTTTCGCTATTACATACACTACAGGCCATACCATATAAATAGAGAATTTAAAGCCCAATATTTGGAATATAAAAGCCCAACTTTATTGTGTTTTTTTTTTATCTAAGTTTTCTGTTTGTTTGCTTGTTTGCTCTTGTCCAGGTGTGAAAAATGCAGATGAGGCAGAGTTGAGGCAGGTGGCGTCTGAACCTCTGGAGCTGAATGTGTA[T/G]AAGGTGAATGATTTTCCTCTGCTCAGTAAACTGGTGGGAAAACTAGCACGCATCCTCTGTGGCAAGATTGAAGACCGTATTAAAGCCAAGAGTAGGTCAATCACAAATTTGTTTTCATTAAATTGGCGAATCTGTACCGTACACTCACATTAAAACTAAAAACTGTGTCTTTTGTGAGAAGGAATGGAGCATCCAACTCAGGAACCAGTTCTGTCATTTCCCAGCCCAACTGATCTGCAGTATGTAGGACTGGGCTCCAGAGAGTTGCGTCTGCGCTGGACCGTCCCCAGCAGAAATCCCCAGCAATACAGAGTGGTTTACCACACCGCTGAAGGACAGAGCCTTAATGAGGTGAGACGGAGGTCTAGCATTATCATGGACATTATTTGGTGTTATTTCTCTCACTATTTATTCAATCATGAGCTTTTAAATGCTGCATTTTTACATTTAAATTCTAGTATGTGCTGTGTTATCTTGTCCATATAATGTGCTAGCTTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10366
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054641 Nonsense 1051 1816 25 51
ENSDART00000102963 Nonsense 1051 1816 25 50
ENSDART00000109899 None None 362 None 10
ENSDART00000132920 Nonsense 1051 1897 25 50
ENSDART00000140219 None None 187 None 6
ENSDART00000054641 Nonsense 1051 1816 25 51
ENSDART00000102963 Nonsense 1051 1816 25 50
ENSDART00000109899 None None 362 None 10
ENSDART00000132920 Nonsense 1051 1897 25 50
ENSDART00000140219 None None 187 None 6

The following transcripts of ENSDARG00000037517 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 23 (position 20776106)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 20561213
GRCz11 23 20487556
KASP Assay ID:
2261-7594.1 (used for ordering genotyping assays)
KASP Sequence:
AGACTGCTGCTCACATGTGTTTGATCTTTCAGTRAGGGTTCCAGCTCCAT[C/A]AGATCTGAGGGTCACTAACTTCACCGGCAGTGAGATAACAGTACGATGGG
Long Flanking Sequence:
TTGTTAAGCCTTTAAATTGCGCTTTAAGCTGAATACTAGCATCTTGTAAAATACGATGTGCTGTCATCATGGCAATGACAAAAGAAATGAGATGTTATAAATTATTTATTAAAATTATTACCTTTAAAAATGTGATGACAGACTCTCTCTATTAAACAGCACTTGGGAAATATTAGGAAAAGAAATGCAATATTTATTTAAATAATCTAATAATTTTGTCTTCCAATGTATATTAGATGTTCTACCCAAACATCATTGTGCATAGTTATCTGTATTTCTCAGGTGGAAGTCAGAGGTGTGAACACAGTGTTGCTGCAGAATCTGTCATCCCTCTCCAGGTATCTCGTGTCAGTCCATTCACTCTACGAGAAGGGCCTGTCCAGCCCGGTCACGGCCAATGTTACTACCTGTAAGTCTGTGACGCATATAACTCTGTGACTCTGATTTGGAAGACTGCTGCTCACATGTGTTTGATCTTTCAGTAAGGGTTCCAGCTCCAT[C/A]AGATCTGAGGGTCACTAACTTCACCGGCAGTGAGATAACAGTACGATGGGAAGCTGCAGCTGATGATGTGGTCTTTTATCTCATCAAATGGATCTCGCTCAATGGAGGAGACCTCAGCCAGGTTAGCTCCAACTCAAGTACTTCCTGTGTTCAGTCAAGATTGAAATTCAGTGGTGATCAAATCATCATTTTTTCTGTCGTCTTGTTCAATTTGTCTTACATGAACGACTAAACATTGGGGGACTTGAAATGTCAGATTTGCAATGGCTAGATTCTCTTATTATAAAAAGGAAATCATCTCTCTTTGGATTTAATCTGGACAGCATGCTTTTAAAGGGTTTAATTTATTTTAAAACAGCTCGTCCACTTACAAAGTCGGTAAAAACTGGAAAGTTTAGCCTGTGTCACACTAAAGATTGAGTATGTGGAATTTGGTCAGATGGTGCTCCGAATATAGGCTGGATAATTTGCTTTTTATTTGAAATTTCTAGCACGTTTTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18513
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054641 Nonsense 1051 1816 25 51
ENSDART00000102963 Nonsense 1051 1816 25 50
ENSDART00000109899 None None 362 None 10
ENSDART00000132920 Nonsense 1051 1897 25 50
ENSDART00000140219 None None 187 None 6
ENSDART00000054641 Nonsense 1051 1816 25 51
ENSDART00000102963 Nonsense 1051 1816 25 50
ENSDART00000109899 None None 362 None 10
ENSDART00000132920 Nonsense 1051 1897 25 50
ENSDART00000140219 None None 187 None 6

The following transcripts of ENSDARG00000037517 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 23 (position 20776106)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 20561213
GRCz11 23 20487556
KASP Assay ID:
2261-7594.1 (used for ordering genotyping assays)
KASP Sequence:
AGACTGCTGCTCAYATGTGTTTGATCTTTCAGTRAGGGTTCCAGCTCCAT[C/A]AGATCTKAGGGTCACTAACTTCACCGGCAGTGAGATAACAGTACGATGGG
Long Flanking Sequence:
TTGTTAAGCCTTTAAATTGCGCTTTAAGCTGAATACTAGCATCTTGTAAAATACGATGTGCTGTCATCATGGCAATGACAAAAGAAATGAGATGTTATAAATTATTTATTAAAATTATTACCTTTAAAAATGTGATGACAGACTCTCTCTATTAAACAGCACTTGGGAAATATTAGGAAAAGAAATGCAATATTTATTTAAATAATCTAATAATTTTGTCTTCCAATGTATATTAGATGTTCTACCCAAACATCATTGTGCATAGTTATCTGTATTTCTCAGGTGGAAGTCAGAGGTGTGAACACAGTGTTGCTGCAGAATCTGTCATCCCTCTCCAGGTATCTCGTGTCAGTCCATTCACTCTACGAGAAGGGCCTGTCCAGCCCGGTCACGGCCAATGTTACTACCTGTAAGTCTGTGACGCATATAACTCTGTGACTCTGATTTGGAAGACTGCTGCTCACATGTGTTTGATCTTTCAGTAAGGGTTCCAGCTCCAT[C/A]AGATCTGAGGGTCACTAACTTCACCGGCAGTGAGATAACAGTACGATGGGAAGCTGCAGCTGATGATGTGGTCTTTTATCTCATCAAATGGATCTCGCTCAATGGAGGAGACCTCAGCCAGGTTAGCTCCAACTCAAGTACTTCCTGTGTTCAGTCAAGATTGAAATTCAGTGGTGATCAAATCATCATTTTTTCTGTCGTCTTGTTCAATTTGTCTTACATGAACGACTAAACATTGGGGGACTTGAAATGTCAGATTTGCAATGGCTAGATTCTCTTATTATAAAAAGGAAATCATCTCTCTTTGGATTTAATCTGGACAGCATGCTTTTAAAGGGTTTAATTTATTTTAAAACAGCTCGTCCACTTACAAAGTCGGTAAAAACTGGAAAGTTTAGCCTGTGTCACACTAAAGATTGAGTATGTGGAATTTGGTCAGATGGTGCTCCGAATATAGGCTGGATAATTTGCTTTTTATTTGAAATTTCTAGCACGTTTTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24303
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Missense, Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054641 Nonsense 1807 1816 48 51
ENSDART00000102963 Nonsense 1807 1816 47 50
ENSDART00000109899 None None 362 None 10
ENSDART00000132920 Missense 1808 1897 47 50
ENSDART00000140219 None None 187 None 6

The following transcripts of ENSDARG00000037517 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 23 (position 20796507)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 20581614
GRCz11 23 20507957
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCAGGGTCGACTGGGAAGCAGAGGGATGCCTGGGAAACCTGGTTATCCTG[G/A]AGAGCAAGGTAACCCTTGATACTTGCATTTCTTTGGAGATGCAGGCAAAC
Long Flanking Sequence:
TCCTGGAAGTAAAGGTGAACGAGGAGAGAAGGTGTGTTACAAAATGGCATGTCTAAGGAATACAAACCTTAAAAGAGGTAGTTTTGTTTCGTTGGTTTTAATTCTCTTTCTGTTTATTAGGGCGAGCCACAGTCTCTTGCAATGATCTACCAGCTTGTTTCACAGGCCTGTGAAAAGCTTGTCCACAGTATGTACTACATTACCTACATCCATTTTAATTACAGTAAAGCAGAATTTAAAAGCATCTTTAAATGTAAATCTTGGCCTGAGTAAGAGCCCTTCAATTATCAATTGTGTTATCTTAATTAATTGTGTTCTAGATGAAGTGCTGAAGATGGATGCTTTTCTAAACGAGCTGAATCGGAAGCCAGTGCCCATCCAGGAGCCAGTAGCACCTCCCGGAGAGCCGGGCATACCAGGGGGAAGAGGGGCACCCGGACCCCGGGGCCCTCAGGGTCGACTGGGAAGCAGAGGGATGCCTGGGAAACCTGGTTATCCTG[G/A]AGAGCAAGGTAACCCTTGATACTTGCATTTCTTTGGAGATGCAGGCAAACTCTGATGGTTTTTTACTTGTATCATGTAAGTAATTCTGGGATTAACATCTAGGACGCAGAGGCATGGCTGGTGAGAAGGGCTCTCCCGGAGCAAATGCAGTGGGACCACAGGGAATGAAGGGTTTTGGAGGTAAAAATGTCTTGTATATCACATAGCTGTCTTCACTTTTTTATTTTTTATTATTAGTTTAACATTTTTAGATTTTCCTGTAACAAATGTGACAAAAACATTGCACATTTCTATCATCTTAATCTGTATTTTATCTCATTTTGTAACAAATTTCTTACCATATTTAAACAATATAGCGCTCAGATGCACAATTGCATTGTAGTAATATTGTTTGAAATGTTAAGTACAATTTTTATTTATTTTTTTATTTGTAAGTTTCTTTAAGTTTTAAGTCCTCTGCTAACCAAGACTGCATTTATTTGAAAATGAATTAATAAGTT
Associated Phenotype:
Not determined