sema6dl

Ensembl ID:

ENSDARG00000011533

ZFIN ID:

ZDB-GENE-050417-171

Description:

semaphorin-6D [Source:RefSeq peptide;Acc:NP_001017682]

Human Orthologue:

SEMA6D

Human Description:

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;

Mouse Orthologue:

Sema6d

Mouse Description:

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D Gene [Source:MGI Sym

Allele Name	Consequence	Status	Availability
sa43158	Nonsense	Mutation detected in F1 DNA	Not yet available
sa45647	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa8429	Missense, Nonsense	Mutation detected in F1 DNA	Not yet available

Allele Name:

sa43158

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000049171	Nonsense	219	999	8	17
ENSDART00000098788	Nonsense	219	1072	7	18
ENSDART00000098791	Nonsense	219	1018	8	18
ENSDART00000123661	Nonsense	219	999	7	16
ENSDART00000130847	Nonsense	219	1018	7	17
ENSDART00000136588	None	None	68	None	3

Genomic Location (Zv9):

Chromosome 18 (position 38672310)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	40385027
GRCz11	18	40375219

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AGTATGGGAGATGGTTCTGCCCTTCGCACTATCAAGTATGACTCCAAGTG[G/A]TTGAAAGGTACTTAAACTTTTGCTTGTGTGCTTTATTTAATTACTAGTAG

Long Flanking Sequence:

TAGTTTTAATCATGTTCAATTCAAAGATTTTGATATATTTGCAATCTTTCATTTAAAAATGTACAAAATATGTTAATAGGAAATTATCTTTACTTATTATTCTAATTATTTTTGGGGGGCATAAAAGAATAATTGATCATTTTGAATAAAAAATTACCTCTGCAAAATATCAGAAAAGGTCACAGGGTCACAAATATCTTAGCAGAGTGTTACTTTATTTAACCTTCTTGCTTGGACTAAATAGACTCTTCCTCTGTGGTTGTTTGCTTTTCAATTATTTCAATGTTATTATTATGATTTTAGTTTTCTTTGAGTGTGTGGTAAATTCCAAAAACATTGTGTGAATTGTATGTGAAGTGTGTTTTAATCTAACCTATTTGTTTGTCAGATGGTAAGCTGTACTCTGCTACGGTGGCAGACTTCCTGGCTAGCGATGCTGTGATTTATCGCAGTATGGGAGATGGTTCTGCCCTTCGCACTATCAAGTATGACTCCAAGTG[G/A]TTGAAAGGTACTTAAACTTTTGCTTGTGTGCTTTATTTAATTACTAGTAGTTTTATGGTAACATTGGTCAACTTGCTGAACCCAATGCACACCCAACCAACAACCCCTAACCATACTTTAAAAGAAGTGGGTCAGTGTGGGAGAACAGAAAATGGCGGGTGTTGACGTAAAATCCAGTTTCCTGTGGCACAATCTAGGTCAACACTCTGGCGTTCCACTCAGCCAACAAAAACGCATCAAATTTTAAGTTAGGGTCAGCGGCGGAGATGCTAATGCTTCCTTCTTTTTTTCCTTCCAGAGCCACATTTTCTTCACGCTGTGGACTACGGGGATTTTGTCTACTTCTTCTTTAGAGAAATTGCAGCAGAGCACAACAACTTGGGAAAGGTATGCTTCACGATACACAATGCTAACAGATAAACAATGCTAATATTCCTACTAATTCAAGACATACAATGCTAACATTCCTACTGATGCTAAAGTAAGGCATAGTTCACACA

Associated Phenotype:

Not determined

Allele Name:

sa45647

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > G

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000049171	Essential Splice Site	324	999	10	17
ENSDART00000098788	Essential Splice Site	324	1072	9	18
ENSDART00000098791	Essential Splice Site	324	1018	10	18
ENSDART00000123661	Essential Splice Site	324	999	9	16
ENSDART00000130847	Essential Splice Site	324	1018	9	17
ENSDART00000136588	None	None	68	None	3

Genomic Location (Zv9):

Chromosome 18 (position 38673712)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	40386429
GRCz11	18	40376621

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TTAATGGGGTGCCTTCTGTGGTTGGAGTTTTCACCACTCAGTTAAACAGG[T/G]AAAATAAATTGTCACAGTGACCTCCCACAAAAATCTCCACATGGAAACAG

Long Flanking Sequence:

CCTTAAACAGCTTCTTGGTAGCACAGATGAATGAATATTTAGGTTTAGTTATTACTGTAGTCAACACCTGCACTGAGAGCAGATTTTACAGTGGTAAATTATTAAGACGGTTACACGCTGCTAATTCAAGCCCTCCAGCACGTTGCAGTTTGGTACTATCTAAAAGTGAAAAAGAATGGTTTCTCACGTATATTTAGATTCAACTCTGCCACCAGGGAGATAGATCTATTATTTAGAAAGCGATGCTGACTTTTTTTCCCACTATTTTTCTCTCACTGCAGGCGGTTTACTCCAGAGTGGCTCGGATCTGTAAAAATGACATGGGAGGGTCTCAGCGGGTGCTGGAAAAACACTGGACATCTTTTGTTAAGGCTCGGCTGAACTGTTCCGTTCCTGGAGAATCGTTTTTCTACTTTGACGTCCTTCAGGCCATTACCGATATCATCGACATTAATGGGGTGCCTTCTGTGGTTGGAGTTTTCACCACTCAGTTAAACAGG[T/G]AAAATAAATTGTCACAGTGACCTCCCACAAAAATCTCCACATGGAAACAGATTGAATAGTGGTGAATTTCTTATACCTTCAGTATTCCTGGATCTGCAGTGTGTGCCTTCTCCATGGTGGACATTGAGAAAGCCTTCCGCGGCCGTTTCAAAGAGCAGAAGACGCCAGATTCAGTGTGGACGCCATTTCCAGAGGAGAAACTGCCCAAGCCCAGGTTGGTGCACGCACTAGTGCGTGACGGGCTAATCATTGAGAGATTAATAATTAACAAGCGATAATTGGACATGCTGCATATTTAACCTGTGTGTGCAGTGGCCATATGGAGGCGGGTATAGATTTACAGGCATGTGGCACATGGCTCTTTGCCCTATTTCCCTCAACCGGAACTGCATGTGTGCGCGTTTTGTCTTTTCAGACCTGGCTGCTGTGCAGGACACGGTTCAGCAGAGTCCTACAAAACCTCCATCGAGTTTCCAGACGAGACCCTTCAATTCATCAAG

Associated Phenotype:

Not determined

Allele Name:

sa8429

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > A

Consequence:

Missense, Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000049171	Nonsense	569	999	16	17
ENSDART00000098788	Nonsense	571	1072	15	18
ENSDART00000098791	Nonsense	569	1018	16	18
ENSDART00000123661	Nonsense	569	999	15	16
ENSDART00000130847	Nonsense	569	1018	15	17
ENSDART00000136588	Missense	12	68	1	3

Genomic Location (Zv9):

Chromosome 18 (position 38678226)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	40390943
GRCz11	18	40381135

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GGTTATGAGCAAGATGTTGAATATGGCAACACTGCTCMCCTCGGGGATTG[T/A]CACGGTAAGCTTATTAACACGWATCTCTTTTCAAAAACATAAGTTAGTAG

Long Flanking Sequence:

CTGGCTAAATTTGCCCACTGATCTCTGTCCATTATGGCCTCTAACCATCCCCATATGATAATTGGCTTCAACACTTTGTCTCCTCTCCACTAATTATGGGTTATGGCTGCCGTCACGTCATAGTGGATGCTGCACACTGGTGTTGAAAGAGTAGATTCCCCACAATGAGGAGAGGGGTCTGGCTGCAGACCTGGTGCAGTGCAATCTGGGCTGCCTCCGATGCTTTTTAATGGGCTCACCTAACCCTACCCATCACAGTGATGTCACTAGCTCCATTTAAGTGCATTGTGTCTGACATTGCATCTCTGAGTGATGCAGTCTCAGCTTGCATCATAAAGGCTGCATCCAGATACTATTGACAATGAGTAAAGCGCTTTGAGTGTCCAGAAAAGCGCTATATAAATGTAAGGAATTAATTTTTTTTTTCTTTTTGTCTCTTTTTGCAGAAGTGGTTATGAGCAAGATGTTGAATATGGCAACACTGCTCACCTCGGGGATTG[T/A]CACGGTAAGCTTATTAACACGTATCTCTTTTCAAAAACATAAGTTAGTAGTTCTCACGTGAATAACCCACCTCACACTCTCAGCTGTTGGAAATTAACACATCACACGCACATCATACTAATTCCTCTGACAATTAAACATGTACACACACACATTGTTTAGGCCTGAACATTACAGTTAAAGAGCGATACAGCATAAACCAGAGGAAAACACTTTTTTTGGTTATTATTTTTGTAAATTAAACAAAACAGCAGTTTTACAGTTTTATAATTTCTAACTTTTCTTTTTGTTATTTCATAATGATTTCCTGTTCCTTTAATTCTTTTAGAATTTTTGGCCACTACATCAGCGCCAGATTTCAAATCATATGGCGACCCAACCTCTGGTTAGTTTCCTGTACTGCACTGATTTCCTTCCTTGAGTTCATCATTCTCCAAATCTCCCTTTCTTTTCTCCTCTACTGCTGCCACCTGCTTTTAATCCTGTGCTTTTCATCATGC

Associated Phenotype:

Not determined

ZMP

Alleles

Mutation Details

Mutation Details

Mutation Details