ZMP

npas3b

Ensembl ID:

ENSDARG00000015876

ZFIN ID:

ZDB-GENE-060503-934

Description:

Novel protein similar to vertebrate neuronal PAS domain family [Source:UniProtKB/TrEMBL;Acc:Q1LXP7]

Human Orthologue:

NPAS1

Human Description:

neuronal PAS domain protein 1 [Source:HGNC Symbol;Acc:7894]

Mouse Orthologue:

Npas1

Mouse Description:

neuronal PAS domain protein 1 Gene [Source:MGI Symbol;Acc:MGI:109205]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa45530	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa6365	Nonsense	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa45530

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > G

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000101511	Essential Splice Site	165	770	5	11
ENSDART00000140213	Essential Splice Site	165	448	5	10

Genomic Location (Zv9):

Chromosome 15 (position 8517354)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	15	8466861
GRCz11	15	8442932

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TTAAATGAAGGCATTGATCCGCGCGTTTGTTTGTGTGTGTTTGGATGCTC[A/G]GGTGGAGTTGACTGGCAGCAGTGTGTTCGATTACATCCACCCTGCGGATC

Long Flanking Sequence:

TTCATCCCCAACTAAACTAACACAACCTACGAAGTGTTACCAAAGTAAAATCCTACATTTGAATGGCATGCGGCTGAGCAAATGAATGAATAGTTTATTTTTGTTTTCATCGTACCTTTCAGACTAATTTGTAGTTCATTATTTATTGATGTAATATTGTGAAGTCTGCTCGACGTGCATGTTTCATGAAGCTCACCTGTTTTGAGATTCTTATAGGCTTTGTAAAATGCAGCAGGTAGAATATTCAGTCTAGGTCATGATACGCTGGAATTAATGTTTCATGTGTAGCTTTGCTGTTATCTCTTTGAAGTTTGTTGCCCTCAGAGCACGACTTAAGCAATAAGTGTGTACATCTGCGCATTACAAATATACCAATAGCAATAGACGATCTTGTGGTTTTCAAGGTCTCTTATTGGTTGGTGCAATATGTTGTGATCTGTGTCATGTTTCTTAAATGAAGGCATTGATCCGCGCGTTTGTTTGTGTGTGTTTGGATGCTC[A/G]GGTGGAGTTGACTGGCAGCAGTGTGTTCGATTACATCCACCCTGCGGATCATGTGGAGATGGCGGAGCGTCTGGGCATCAGGCCACACCTGCGGGCAGAGGCCGGCTGTCAGACGTCCCATGAAAGTGCTTCAAGCTCAGCATCCACGTCCTCGCTGGCTGGCACTCCAGAACCAGGTAACATGGACTTCTTCTGAGATCCAGATTTATTCACTACTAAATTACAGCCTGCAAATTACAAAGTTGAATACATTTACAGCATCTTTTTATTTTTATTTTTTGGTAGTTATTGTTTACACATGAAAATGTTCAGTGTTAATGATTTTCTTTGGAATTTAAAGTAACGTACTGGCAGCAGTTTGCCAGACATTTACTGTACGAGTTTTGTAAATTACACAGTATTTAACTGTTTTATGAACTGTATTTTACTGTTATACAGTTATGTAGTATGTTATTGTTATTTAAAGTTGAATTGTGAACATTTTATACTAAAGAGAAAAT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa6365

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000101511	Nonsense	551	770	11	11
ENSDART00000140213	None	None	448	None	10

Genomic Location (Zv9):

Chromosome 15 (position 8501303)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	15	8450810
GRCz11	15	8426881

KASP Assay ID:

554-4528.1 (used for ordering genotyping assays)

KASP Sequence:

ACCACAATCCCTCCAGCAAACGGGTGAAGAATGAAGAGGGGGCTTCAAAA[C/T]AAGGCAACGGGGCTAACGGAGCAGGTAAGATCCACAATGGCCGTGCTGTG

Long Flanking Sequence:

CAGTCGGCCAGAGCTGGCAGACATGCCTCTGGACTTATTACAACTTCCAGAAAGCCTGAGGGCAGAGCGGCTTCAAGCAAGCTCCTCCCCGCGCGACATGTCTCCAAAGACACAAGGTATGCTCTTAGCCCCATACACAATTATACATCCACACATCGATAATAAGTTACTACGCTGAGTTGTCTCTTTTTCTAGGCTCTACTGGGACGCAACCATTGAAAAGCAGGTCTGAAACAGACCTCAAAGGAAAGGAAGCCTTCTCACACAATACTTCCAGTCAATCAGAGAACACTAGGAAAAGATTGCACCAGACTGACTCTGAGAGTGGGCCACCCGAGGCAAGGAGACGGATGGAGGTGTTTCGTCAGAGAGAGGACAGCCCGTGTACCTCCTCGGACCAAGCCAGTGACAGCGAGGTGGAAGAGGATGATGAGAGGGAGAGCGAGTGGGACCACAATCCCTCCAGCAAACGGGTGAAGAATGAAGAGGGGGCTTCAAAA[C/T]AAGGCAACGGGGCTAACGGAGCAGGTAAGATCCACAATGGCCGTGCTGTGATCCAGCATCTTAAGAGTGTGGTGACCAGTTCCGGATCAAACATTAAGACTGAACAAGAAGTGTTGGGCACAACTGTAGGTGCAGGTTCTGGGAGGCGATGGAGTCAACCTCTGCTTGGCAATGGCGGACCTAATGGCAGCAGTCCACCTTCCCAGCCTCCAAATTCCACCCCGACAGAAGCTCCACCCAAGGGTCTATTCAGCCCACCCTCCCCAACCCTGTCTCCACCCATCCCAGCATCATCCCTACCCAGAGATGACCGGTCCATTCATGGAGGACGTGCTTCCGACTTTGAGCTACTGCAGAGACTAACTGCAAGTGGGGCTGCAGGACGTGTTCTTTTTCATCCCCTGGCTCTCGGCCCGCAGGGACCTCAGAGTCTCTACGCTCCAAGTACGATTCGCTACGCCCCACCTGAGATGCCCACAATTCACACTGAAGGTCACCGC

Associated Phenotype:

Not determined