Busch Lab

ZMP

limch1

Ensembl ID:
ENSDARG00000079060
ZFIN ID:
ZDB-GENE-030131-9210
Description:
LIM and calponin homology domains-containing protein 1 [Source:RefSeq peptide;Acc:NP_001108201]
Human Orthologue:
LIMCH1
Human Description:
LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:29191]
Mouse Orthologue:
Limch1
Mouse Description:
LIM and calponin homology domains 1 Gene [Source:MGI Symbol;Acc:MGI:1924819]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa45509 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa13111 Essential Splice Site Available for shipment Available now
sa10987 Nonsense Available for shipment Available now
sa35656 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa45509
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110570 None None 1020 None 26
ENSDART00000126283 Essential Splice Site 3 975 1 26
Genomic Location (Zv9):
Chromosome 14 (position 14661753)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 16601776
GRCz11 14 16907429
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGAGGGCGGCTGTTTGTTTATCCCCGTCTCTCTGAAGTAGTGGTCTGAA[A/G]TAAGCAGTTGGGATAAGCTTTGATTTTGTCTGTGTCATAGAATGTCATTT
Long Flanking Sequence:
TTGCATTATTGGCTTTGTTTACTTGGCAAAACATTAAAAAAATATGTTTTTTTTATGGCAGAATTGTGTGTTTTAAAAGACTGTCCTGTGTTTTTGTGGTGTGTTTTGTCTGTTACCCCAAATCATATGACTGAAGTGTAAATTCTAGCTTAAATCTCCACCCAAGTTGTTCTTTCTGGACGCATATAAAAGAGTTTAGTAGAACATGGCTATTTTGACAAAAGATTGTAAAATAAACTAACTGTTTTATTCCGTAATAATTAAAGCACAATAAAACTGAATGCGTAACCTGCTTATGTCTTTTGCCTCTGAGGAAGGAAAACACAAGCAGCACAGAAGGTAAATCCCAAATGTCAGGAATAATTAGCACGGATACTCGCCTGAGAAAGAGATTTAGCCAGGATGACGGCTGCTTACGACAAGCCTGTTAGCTTTGTGTTGTCAGAAAGAGAGAGGGCGGCTGTTTGTTTATCCCCGTCTCTCTGAAGTAGTGGTCTGAA[A/G]TAAGCAGTTGGGATAAGCTTTGATTTTGTCTGTGTCATAGAATGTCATTTCCTGTTGTGTTGTTGATTTTCATCTTCAATTTTCTCTCTTGTAATGCCAGAAATTGCTCTGAGAAACTCTGCTGTAAACTTCAAACTACACACTGGTGCTTTTTAGACCTTGTAAATCTTGCAGAAATAAAGTGTTGTGGCTGAGCTGGTGTGTGATAAACATGTTTGTTTGTGTGCGTTTGTTGCAGGCAGTGACCGGCAGGAGTTTTGCTGACAGGGACTTCAGAACAGGACTTGACAACGGCATCCTACTGTGCGAGTGAGTAATATTAATGCACATGTATATAGATACATTTAAAAAGCCGGCCATAATCATTTAGCTGTCATTATTTATTTTCTTTTTTTGTGGAACAAACATTTTGCACAAGTCTCACAACCCACATAGAAATATAATATATGGAATGTATGTAAGTGGCATATTATTCATATTTACAATTTGTTAATTAAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13111
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110570 Essential Splice Site 95 1020 3 26
ENSDART00000126283 Essential Splice Site 50 975 3 26
Genomic Location (Zv9):
Chromosome 14 (position 14671895)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 16611918
GRCz11 14 16917571
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CGGGTCTGGTGAAGAAGATAAACAGACTGCCCACTCCTGTAGCTGCTCAG[G/A]TAAGTTTCTGTTTACTTGCCCAGGCCTTGTCTAAGCATTTTTGTAAWGTT
Long Flanking Sequence:
TTAGAATATCTTGTTTTGTTTTAAAAAAAATGATGAGTCTGAGCTATCATTTTAAGGGGCCTTGATGTGACTTTACACTTGTTTCTTTCTTTGGCTAATTATCATTCCCAAAAGAAATCTTATCCCGCAAAAAGATTGGGCCATTAAATCTCTCCTTGGAATTGATCAGTCTCACTTTGCATCATCAGTATCCATGTTGTGGGTGAGGTAACCTGATTGTCTGCGTTGCTGGTTCATGCAGACAGATGTGGCAACCTCCATTGATCACTGGCCTTTTAAAACTACAAATATTCTTGGACTCTGCCGACGATGTTGACAAAACTGCAAAGTAGACATTAATCAAATATGTGTGATTGGGTCTGAGCGACCTTTGTAGGGCTTTGGTTCTAAATCAAAGTGTTTACAGTGTGTCTTTCCCCCTATCTCTCAGACTGCTGAGCTCAATCAGACCGGGTCTGGTGAAGAAGATAAACAGACTGCCCACTCCTGTAGCTGCTCAG[G/A]TAAGTTTCTGTTTACTTGCCCAGGCCTTGTCTAAGCATTTTTGTAATGTTTCTTTTGATATAAAGTGATTCTAAATATATGCATACTGGCCATTTGAGATGATTTCTTGGTGTGAGCCTTAAGCAGTTAGTGTGCCTGAATTCAGTGATCATTTAAGTTAAGCTTTAAGAAACTTATCTTTTTACATTTTTTAAAAATTATTATTATATACAGTGAGTACAGAAAGTATTCAGACCCCCTTACATTTTTCACTCTTTGTTATATTGTAGTAATTTGCTATAATAACTTATTTAAAAAAAATCCATTCATTAATGTACACACAGCAGTCCATTTTGACAGAAAAAACAGAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACCAACGTATCATGTGGATCAAGAATTCAGACCCTTTGCTCAGTATTTAGTAGAAGGACCCTTTTGATCTTATACAGCCATGAGTCTTTTGGGAAAGGTGCAGCACGTTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10987
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110570 Nonsense 182 1020 7 26
ENSDART00000126283 Nonsense 137 975 7 26
Genomic Location (Zv9):
Chromosome 14 (position 14707645)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 16647668
GRCz11 14 16953321
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTTTTTATATTGTTTATATGTGCTTGTTTTTGTMAGGAAGCAGAAGAGTG[G/A]GACAGCCCGAAGCGTAGCATCAGGGACAGTGGTTATATAGACTGCTGGGA
Long Flanking Sequence:
AAAGTGTCCATGGATGACTACAGTTGAACCACTAAAGTCACAGGGATGTTGACTGTGTTTTTGCTTTATTTTCTGAACTTTGAATGCCTCTGGAATGTTGCTGTCCATGGCGGTGGTGAACTGGTTCAAAGTGGGGAGATCTAATGTGTAGTAAATAATATAATTGTGGTCAAATGGTGCACTATAAAGAGCATTAACTGGTCTATAATTGGCCAATGACCATGGAATAAGGGAATAACAAAAGGCTTAATGCCACATTTGAAATCCTTTAATGCATGATAATCAATAGATTATTCCTTAACTAAATAATACTGTGAGTATATTCAACTTCAACCTTATATATATTGTATATATTTATATATTTTTTGGTCAATGAATGACTTTCAATTCTGTGAGAGTTGGTGCATGGAAAAAAAGTGAGAATAGCAAATAAAAATCAAATATGGGACACTTTTTATATTGTTTATATGTGCTTGTTTTTGTCAGGAAGCAGAAGAGTG[G/A]GACAGCCCGAAGCGTAGCATCAGGGACAGTGGTTATATAGACTGCTGGGAGTCTGAGCGCAGCGATTCTCTCTCTCCGCCGAGGCACGCGCGAGACGACTCCTTCGACAGCCTGGACTCCATCGGCTCACGCTCCCATCAAACCCCCTCGCCCGACGGCCTGCTCGCCCGCGGCTACAGCGATGGTAAGCCTAACACACATTACATAAAAGTATGATCATCTAGAGGTGGAGTATATACTGTACTGGTTGGAACAATAACAGCTAGTGTATATTTTGAGTAATGCAGTTGAGGAAATGCCAAAAGCTAAGAAATAGTTGGCACCCGAATGCCCTCTGAGGAGAAAAAGAGGAAAAACTGCACTCCATTTGTGGAACTGACCCAGCTGTCCTGCTTATTGACAGCTGTTAATCCTAACCAAGCCTTATTCTGCTATAAAGACCATAAAGTGTTGGATGAAGGCCAAATCAAGCATTTGAATAAAAGTGTACATACAGTGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa35656
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110570 Essential Splice Site 328 1020 8 26
ENSDART00000126283 Essential Splice Site 283 975 8 26
Genomic Location (Zv9):
Chromosome 14 (position 14722651)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 16662674
GRCz11 14 16968327
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAAGCTGGAGTAACGCAACCTCACCTGTTGGGGGAGAGAGACCTTTCAGG[T/A]AAATCTAACTGAGATGCTGGTTTGTATGTAGATACAGTGACTGGTTGACC
Long Flanking Sequence:
AGTTTAAATGTCCTACAACTTTACACAAACAGCTGGAAACAAGTCCTCAAACCATACACAACAACTGAAACAAATCTTAAATGCACTTACAGGCTGCTGGTCTAGATGCTGATAAAGTGCTTCTCCTCCTAACTTGCAATACAATCTTAACTTCTGTTTCTCCTCAACATACCAGAAACAAAACGGAATGAAATTGTAAAACTAGACCACATTGCTAATCATTTTATACGGTTTGTCCATCTGCAGGCCGCGGCAGCGACTCGGAGTGCGACACCCCCCAGAGGAAGATACCGGATGTACGCAAGGATGACATGTTGGTGCGGCGAACATCCTGCAGTGAGCCACGGACCGCTGTTCCTTTCAATCAGTACCTGCCCAACAAAGCCAACCAGGGTTCCTATGTGCCCCCACCAGTGCGACGCCCGCGTGCCGACAGAGACGAAAGCCGCAAAAGCTGGAGTAACGCAACCTCACCTGTTGGGGGAGAGAGACCTTTCAGG[T/A]AAATCTAACTGAGATGCTGGTTTGTATGTAGATACAGTGACTGGTTGACCATCAAGCAGGGTTTTTGTTTTATATACAGTACAGTCTTAGAAATAAAGGTACAAGAGCTGTCACTAGGGTGGTAACTTTTTGAAAGGTTCATATTTGTACTGAAAGAGTCCTTATTAATACCTCAAGAGTACATATTAGTACCTTTAAAAAGTACAAACGTGTACCTATTGAAATTTTTAGATAGTAATATATACCTTTGAGGTACTAATATATACCCTTTGAGTACAAATATGTACCATTCGAAAAGATACCACCCTAGTGACAGCTCTTGCACCTTTATTTCTGAGAGTGTATAGTGGTTACGATGATTTGCTACTGAAATAAATATTCTGCTAGGGCTCTCAGATTAGAGGCATTTCCAGTTAACATCTGTAAAGAGTAAAGGGAAATAACTGCTAGTATGTACTATTATGTGAGTAGGTCAAAGATCAGGCATTTATTTAGAATCA
Associated Phenotype:
Not determined