ZMP
lgi1b
Ensembl ID:
ZFIN IDs:
Description:
leucine-rich, glioma inactivated 1b [Source:RefSeq peptide;Acc:NP_001122241]
Human Orthologue:
LGI1
Human Description:
leucine-rich, glioma inactivated 1 [Source:HGNC Symbol;Acc:6572]
Mouse Orthologue:
Lgi1
Mouse Description:
leucine-rich repeat LGI family, member 1 Gene [Source:MGI Symbol;Acc:MGI:1861691]
Alleles
There are 6 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa19023 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa41952 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa22016 | Essential Splice Site | Available for shipment | Available now |
| sa45447 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa19023
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000081298 | Nonsense | 9 | 543 | 2 | 9 |
| ENSDART00000126667 | Nonsense | 17 | 551 | 2 | 9 |
Genomic Location (Zv9):
Chromosome 12 (position 5667712)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 12 | 5155326 |
| GRCz11 | 12 | 5190283 |
KASP Assay ID:
2260-4901.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACACACATACACACACCCGCGCAGGATGGGATATGCGAACAGGAGCATA[A/T]GAGCATACACTTTTCTGTTGTGGGTCGCAGCGGTCCTGCTGTTTGCGGAG
Long Flanking Sequence:
GCATCTCTCCAAAGCCTCATGAATATTCTCTCTATCACTTATTCATGGGCTCGGTTCATGCGCATTCACAGTAATAACACCATTGGACAGCAGCTGGTACATCATGATGCAAAAGAGGGATTCTCCCAGGATCTGAAGGAATTGTTTGATCCTCAAACGCGCGTCGGCAAGGAAAACATTGTGATCTTGTAGGATTTTTCTTTCCATTTTCTCGTGCACTTTCATTTTCACTGTTGTTGTTTTTTTTAAATTCTTTTATGCCGACCCACACACATAAAAAAATTGTTTTGTTATTAAAATCTGCATGCAACTAACAGGAAATCTGAGCCCATTATAGCAGAACGAATCGCCTGGATGAGCGCCTGACAGACTGAGACTCAGACATTCATCACACGGACACAAGTGAAGGAGTCGAGCGGCAGAGCAGCTCTGATCACCCGCGCAAACCCACACACACATACACACACCCGCGCAGGATGGGATATGCGAACAGGAGCATA[A/T]GAGCATACACTTTTCTGTTGTGGGTCGCAGCGGTCCTGCTGTTTGCGGAGAGCAGAAGAGGCAAACAGCCGAGATGCCCCTCTGGATGCACGTGCACCAAAGATAACGCCTTGTGTGAAAATGTGAGATCTGTGCCTCACAGCTTCCCTCCAGACGTCATCTCACTGTAAGTCTATACAAACTACACTTTATATTCAACTTCTGTATGATGTGGTAATGTAGTGTAGAAATGCAAGTCTTTTAATAGGGCCTATGTGAGCCCAGACCACAAAACTATCTATATGTTTTAATTAAGATGTACATTAAAGCTGAATAAAAACGCTTTTTATTGAGGTATACTTTGTTAGGATGGGAAATTATTTGGCTGAGGTATCCTAAGGGTTAAAAATAGCAAAATAATGTAAAAATCAAAGTTAAAGTCGTCTGAATGACTAAAAAAAGATGTAGGAACATTTCTAAATATCTTCTATTTAAATATAGTATCAATTTAAATGTAAAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa41952
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000081298 | Essential Splice Site | 160 | 543 | 6 | 9 |
| ENSDART00000126667 | Essential Splice Site | 168 | 551 | 6 | 9 |
Genomic Location (Zv9):
Chromosome 12 (position 5660141)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 12 | 5162897 |
| GRCz11 | 12 | 5197854 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGACGTTGCCCAGAGATATATTCAAAGGAATGGATGCCTTAACAAAAGT[G/A]TACGTATTTGACCAATAAAGTCCAGTATTCTTTGCACTGTGAAAGAAGTA
Long Flanking Sequence:
TGACAATATGACTTTCTTTCTTCGGTTGAAGATATTCTGACGAATGCTGCCACTCATTCACTTCCATAGTAGGGTAAAAATTACTATGGATGTCAATAGGTGCCAGCAACCAGCATTCTTCAAAATATCTTCTTTTGTGTTCAACAGAAGAAAAACATTTAAATAGGTTTCAAACAAGTGAAGGATGAGCAAATGATGACAGATTTTATTTTTGGGTGAATTATCCCTTTAACTAATGTAAAAAAATCAATCCTTAATGTATTCATCACTGGTAAAATGCAATGTTCCACACAATTCCTTCATGTTTTTATGCATTTCAATGGATTTAACATGAATAAGTTCTCCAAAAAAACTCAAATCTTGTTTTTAATACGTAGTTTGAACAAGCAGGAACAAAAATAATTTGTTGAGTGATTTTTGTTTTACAGGAGTCTCGCCTACAATAATCTCGAGACGTTGCCCAGAGATATATTCAAAGGAATGGATGCCTTAACAAAAGT[G/A]TACGTATTTGACCAATAAAGTCCAGTATTCTTTGCACTGTGAAAGAAGTAAAGGTAAATGAAAGTCCTGTGTGCATGCAGGGATCTCAGAGGAAACTTGTTCAGTTGTGACTGTAAGTTGAAGTGGTTGGTGGAATGGATGTTCAGCACTAATGCAACGGTGGATCAGTTATACTGCAGTGGGCCTTCACCCTATCAAGGGAAGAAGATAAATGACCTCATGCCTCAGTCCTTTGACTGCATTACAGCAGGTAAATGAGCGCTGGACTCTCTAGAGTATAAAACAGCCAGACTGATCTGCAGGAAGACTCTGCTTTTAAAAAAGGCTGATTTTTATTTCTGCTGAAATGCTTAGAAATGCACTTTAAACATTCACATCCTCAGCACAGGCTCACCTTAAAAACAGTTTGTGTCTCAGCACACAAGATTCATTCCTATTTGTGGCCAGATATCCTTAAGGTTGTAAATGTGTATGTGCAGGGGTGGATTTAATCAATAAGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa22016
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000081298 | Essential Splice Site | 160 | 543 | 6 | 9 |
| ENSDART00000126667 | Essential Splice Site | 168 | 551 | 6 | 9 |
Genomic Location (Zv9):
Chromosome 12 (position 5660140)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 12 | 5162898 |
| GRCz11 | 12 | 5197855 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGACGTTGCCCAGAGATATATTCAAAGGAATGGATGCCTTAACAAAAGTG[T/A]ACGTATTTGACCAATAAAGTCCAGTATTCTTTGCACTGTGAAAGAAGTAA
Long Flanking Sequence:
GACAATATGACTTTCTTTCTTCGGTTGAAGATATTCTGACGAATGCTGCCACTCATTCACTTCCATAGTAGGGTAAAAATTACTATGGATGTCAATAGGTGCCAGCAACCAGCATTCTTCAAAATATCTTCTTTTGTGTTCAACAGAAGAAAAACATTTAAATAGGTTTCAAACAAGTGAAGGATGAGCAAATGATGACAGATTTTATTTTTGGGTGAATTATCCCTTTAACTAATGTAAAAAAATCAATCCTTAATGTATTCATCACTGGTAAAATGCAATGTTCCACACAATTCCTTCATGTTTTTATGCATTTCAATGGATTTAACATGAATAAGTTCTCCAAAAAAACTCAAATCTTGTTTTTAATACGTAGTTTGAACAAGCAGGAACAAAAATAATTTGTTGAGTGATTTTTGTTTTACAGGAGTCTCGCCTACAATAATCTCGAGACGTTGCCCAGAGATATATTCAAAGGAATGGATGCCTTAACAAAAGTG[T/A]ACGTATTTGACCAATAAAGTCCAGTATTCTTTGCACTGTGAAAGAAGTAAAGGTAAATGAAAGTCCTGTGTGCATGCAGGGATCTCAGAGGAAACTTGTTCAGTTGTGACTGTAAGTTGAAGTGGTTGGTGGAATGGATGTTCAGCACTAATGCAACGGTGGATCAGTTATACTGCAGTGGGCCTTCACCCTATCAAGGGAAGAAGATAAATGACCTCATGCCTCAGTCCTTTGACTGCATTACAGCAGGTAAATGAGCGCTGGACTCTCTAGAGTATAAAACAGCCAGACTGATCTGCAGGAAGACTCTGCTTTTAAAAAAGGCTGATTTTTATTTCTGCTGAAATGCTTAGAAATGCACTTTAAACATTCACATCCTCAGCACAGGCTCACCTTAAAAACAGTTTGTGTCTCAGCACACAAGATTCATTCCTATTTGTGGCCAGATATCCTTAAGGTTGTAAATGTGTATGTGCAGGGGTGGATTTAATCAATAAGCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa45447
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000081298 | Essential Splice Site | 216 | 543 | 7 | 9 |
| ENSDART00000126667 | Essential Splice Site | 224 | 551 | 7 | 9 |
Genomic Location (Zv9):
Chromosome 12 (position 5659890)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 12 | 5163148 |
| GRCz11 | 12 | 5198105 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAAGAAGATAAATGACCTCATGCCTCAGTCCTTTGACTGCATTACAGCAG[G/A]TAAATGAGCGCTGGACTCTCTAGAGTATAAAACAGCCAGACTGATCTGCA
Long Flanking Sequence:
CCTTAATGTATTCATCACTGGTAAAATGCAATGTTCCACACAATTCCTTCATGTTTTTATGCATTTCAATGGATTTAACATGAATAAGTTCTCCAAAAAAACTCAAATCTTGTTTTTAATACGTAGTTTGAACAAGCAGGAACAAAAATAATTTGTTGAGTGATTTTTGTTTTACAGGAGTCTCGCCTACAATAATCTCGAGACGTTGCCCAGAGATATATTCAAAGGAATGGATGCCTTAACAAAAGTGTACGTATTTGACCAATAAAGTCCAGTATTCTTTGCACTGTGAAAGAAGTAAAGGTAAATGAAAGTCCTGTGTGCATGCAGGGATCTCAGAGGAAACTTGTTCAGTTGTGACTGTAAGTTGAAGTGGTTGGTGGAATGGATGTTCAGCACTAATGCAACGGTGGATCAGTTATACTGCAGTGGGCCTTCACCCTATCAAGGGAAGAAGATAAATGACCTCATGCCTCAGTCCTTTGACTGCATTACAGCAG[G/A]TAAATGAGCGCTGGACTCTCTAGAGTATAAAACAGCCAGACTGATCTGCAGGAAGACTCTGCTTTTAAAAAAGGCTGATTTTTATTTCTGCTGAAATGCTTAGAAATGCACTTTAAACATTCACATCCTCAGCACAGGCTCACCTTAAAAACAGTTTGTGTCTCAGCACACAAGATTCATTCCTATTTGTGGCCAGATATCCTTAAGGTTGTAAATGTGTATGTGCAGGGGTGGATTTAATCAATAAGCTTGGTAAGCCGCCACTTAGGAATTCTGGGAGCCGATAATAAATACCTAAAAGTTTCTAAATAACTTTTATATAACGACATTTTTTATTATTAATTTATTATTATTATTATTATTAACGTTATTTGTTAATGTCATTTATTATTTTGAATGATGAGGGTCTAACAAATACAGTTTTACCTTAATTATCACATTCATGCAAATGTGTCCCCCCACCCAGAATCATGGATCAGTCCAGCAGTCAAATCAGATAA
Associated Phenotype:
Not determined