ZMP
pcdh1a4
Ensembl ID:
ZFIN ID:
Description:
protocadherin 1 alpha 4 [Source:RefSeq peptide;Acc:NP_001019270]
Human Orthologues:
PCDHA1, PCDHA10, PCDHA11, PCDHA12, PCDHA13, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9
Human Descriptions:
protocadherin alpha 1 [Source:HGNC Symbol;Acc:8663]
protocadherin alpha 10 [Source:HGNC Symbol;Acc:8664]
protocadherin alpha 11 [Source:HGNC Symbol;Acc:8665]
protocadherin alpha 12 [Source:HGNC Symbol;Acc:8666]
protocadherin alpha 13 [Source:HGNC Symbol;Acc:8667]
protocadherin alpha 2 [Source:HGNC Symbol;Acc:8668]
protocadherin alpha 3 [Source:HGNC Symbol;Acc:8669]
protocadherin alpha 4 [Source:HGNC Symbol;Acc:8670]
protocadherin alpha 5 [Source:HGNC Symbol;Acc:8671]
protocadherin alpha 6 [Source:HGNC Symbol;Acc:8672]
protocadherin alpha 7 [Source:HGNC Symbol;Acc:8673]
protocadherin alpha 8 [Source:HGNC Symbol;Acc:8674]
protocadherin alpha 9 [Source:HGNC Symbol;Acc:8675]
protocadherin alpha 10 [Source:HGNC Symbol;Acc:8664]
protocadherin alpha 11 [Source:HGNC Symbol;Acc:8665]
protocadherin alpha 12 [Source:HGNC Symbol;Acc:8666]
protocadherin alpha 13 [Source:HGNC Symbol;Acc:8667]
protocadherin alpha 2 [Source:HGNC Symbol;Acc:8668]
protocadherin alpha 3 [Source:HGNC Symbol;Acc:8669]
protocadherin alpha 4 [Source:HGNC Symbol;Acc:8670]
protocadherin alpha 5 [Source:HGNC Symbol;Acc:8671]
protocadherin alpha 6 [Source:HGNC Symbol;Acc:8672]
protocadherin alpha 7 [Source:HGNC Symbol;Acc:8673]
protocadherin alpha 8 [Source:HGNC Symbol;Acc:8674]
protocadherin alpha 9 [Source:HGNC Symbol;Acc:8675]
Mouse Orthologue:
AC020968.2
Mouse Description:
protocadherin alpha-3 [Source:RefSeq peptide;Acc:NP_619603]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa21717 | Nonsense | Available for shipment | Available now |
| sa21718 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa21717
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000100600 | Nonsense | 258 | 789 | 1 | 4 |
Genomic Location (Zv9):
Chromosome 10 (position 21646064)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 10 | 21607478 |
| GRCz11 | 10 | 21564859 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGTTAAAGTGAAGGAAAACACGCCAGTTGGAACTAAAATAATCTCTGTAT[C/A]AGCCAGAGATTTGGATGAGGGCATTAACAGCGAAATTCAATATTCATTTC
Long Flanking Sequence:
CGTTAATCAGAAATGTGCACTGAATTTAGAGGCTCTTGCTCAGAATCCTCACAGACTTTATCGACTTGAAATTGTAATTGTGGATGTGAACGACAATGCTCCAGTTTTTCCAAACAGCACATATATTCTTAGCGTTACAGAAAATGCGATTGAGGGGGACAGATTTCCTCTTCCAGTTGCAAAAGATTTAGATGTCGGCAGTAATGCTCTAAAAGACTACAAACTCAGTTCAAATGAACATTTTTCCTTAGATGTTCATAGCGGGCAAAGGAGTATATATGCTGAGTTAATACTACAGAAAGCTTTAGACAGAGAAAAGCAAGCTGTTATTCATTTAATACTAACGGCTATTGACGGAGGGAAACCTCCAAAATCTGGAACTTTGAGTATTGTTGTTAATGTTAAAGATATAAACGATAATAAACCTGTTTTCAGCAAATCTTTATACAAAGTTAAAGTGAAGGAAAACACGCCAGTTGGAACTAAAATAATCTCTGTAT[C/A]AGCCAGAGATTTGGATGAGGGCATTAACAGCGAAATTCAATATTCATTTCTTGGACACGGAAATAACGACGAACTGAACCGTTTTACAATTAATACCAATTCTGGAGAAATTACTGTTCAAGGTCAAATTGATCACGAGGAAGACTCTGCAATTGAACTGCGTGTTCAGGCAAGTGATAAAGGCAGTCCTTCAAAAAGTACACACTGTAAAGTTTTAATAGAAGTTGTGGATGAGAATGATAATGCCCCAGAGATAGTTACAACTCCACTGATGGAAAGTGTAAAAGAGGACGCAAAATCAGGAACCGCTGTTGCTTTAGTCACAGTTTCTGATAAAGATATGGGTAAAAACGGCATTTTACATTGTGCTTTAAAGGGTTCGTTCCCTTTTAAACTGGAGACATCATACAATAATCATTATTCTCTAGTGGTAGATGGACCACTGGACAGAGAGAGTGTTTCTCAGTATAACATCACTATTACAGCTGCAGATGAAGGAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa21718
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000100600 | Essential Splice Site | 789 | 789 | 1 | 4 |
Genomic Location (Zv9):
Chromosome 10 (position 21647659)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 10 | 21609073 |
| GRCz11 | 10 | 21566454 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAGTGAAGATACTTTTACGCGCACTCAAACTCTTCCTACCAACGAGAAG[G/A]TAAGACGGTAAATTGTTTTGTAATTCATAGCACTGCACTTGACTCAAAAG
Long Flanking Sequence:
CTAAGAGACGAATGAGTGACAATGACTTAAAAACTCACCCACAGATTATTACAGTGTCTGAAAATGGAGAGCCATCGCTCTCAGCGACTACGTCCATGGATGTTGTGGTTCTCGAGAGTCTGGATGACATAAAGACATCATTCAGAGAAGTTCCTGTTAAAGAGGAGAGTTTTTCAGATCTGAATCTGTATCTGCTCATCGCTATTGTCTCAGTATCAGTCATCTTTTTACTGAGTCTCGTGGGTTTGATAGCAGCTAAATGCTACAGGACAGACAGCAGTTTCAGCAGGTACGGCGCTCCAGTGATCAACACACATCCAGACGGCAGCTGGTCCTTCTCTAAATCTACTCAACAGTACGACGTGTGTTTTAGTTCAGACACAATAAAGAGTGATGTAGTGGTTTTCCCTTCGCCGTTTCCACCAGCAGACGCGGAGCTGATCAGCATTAACAGTGAAGATACTTTTACGCGCACTCAAACTCTTCCTACCAACGAGAAG[G/A]TAAGACGGTAAATTGTTTTGTAATTCATAGCACTGCACTTGACTCAAAAGTTATAGAAACCTTTCATATTTCCGGGAATGATCATTTTTTTTAAAATCTTTTTTTAAAATGAATATACACACATGTACTTTTTCTGTTTCTGAAAATGCTTAAAAGAAATACACTTAAATGCACTGTCAAATCAAAATAAGTAAAGCACTGGGTGCTTTTGAATAAGTGAAACGTTTTCATTTCCCACTTGTTATTCAGAGTATATGTTTCAAATACCTCTGGTTCATGTGCCTTATTTGTGGTTTTATTCGTAACAATGACCAGCATTGAAGTGAAATTTTGATTTGCATGGACTTGGCACATGGCACTAAGGGACGATATTGTTTTAATTATTTTTATTTGTTGTTATTAATATTATTGTCACAAAATTTACATTTAGCTCTTGATATCCTGCTCTTTGCTTGTTAGTTTGCGCTATAACCGAAACGTTACCTATTTTTAAATCAAGG
Associated Phenotype:
Not determined