Busch Lab

ZMP

si:dkey-21p1.3

Ensembl ID:
ENSDARG00000002295
ZFIN ID:
ZDB-GENE-081105-162
Description:
Novel collagen protein [Source:UniProtKB/TrEMBL;Acc:B0UYF9]
Human Orthologues:
COL24A1, COL27A1
Human Descriptions:
collagen, type XXIV, alpha 1 [Source:HGNC Symbol;Acc:20821]
collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:22986]
Mouse Orthologues:
Col24a1, Col27a1
Mouse Descriptions:
collagen, type XXIV, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1918605]
collagen, type XXVII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:2672118]

Alleles

There are 10 alleles of this gene:

Allele Name Consequence Status Availability
sa15248 Nonsense Available for shipment Available now
sa21230 Nonsense Available for shipment Available now
sa21231 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa15248
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000098151 None None 190 None 7
ENSDART00000125681 None None 185 None 8
ENSDART00000128489 Nonsense 13 103 1 5
ENSDART00000129712 None None 114 None 6
ENSDART00000134775 Nonsense 145 1125 9 52
Genomic Location (Zv9):
Chromosome 8 (position 15383158)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 14828502
GRCz11 8 14866207
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTATTAAATCTCTWCAGGGAAAACCAGGAGGTGATGGACCACCAGGTCAA[A/T]AAGGAGAGYGTGTATGTGCATCCAATATTATWTTCYGAAAACTTGTAAAT
Long Flanking Sequence:
CAATTAGTGTGAATGAACATTGTATTTATTCATTCATTCATTTTCCTTCGGCTTAGTCCTTTATTTTTTAAGGGTCGCACACTGTGAAATAAACCGCCAACTATTCTAGCTAATCTTTTACGCAGCAGCTGCCCTTTCTAGCCGCAATCCAGTACTGGGAAACACCCATAAACAGACACACTACGGCCAATTTAGTTTATCCAATTCCTCCATAGCGCATGTCTTTGGACTGGGGAGAACATGCAAACTTCACACAGAAATGCCAACTGTCCCAGCCAGGAATCAAACCAGCAACCTTTTTGCTCTGAGGTGACAGTGCTAACCTCTGCATTGTGATCAATGATGTTGAAAACACTTGAATACAACCTAGTTGTTAAATCAATCTGAAATTCGGTATAGTCACTGAGTGTGTTTTTCTTTCCTTCCTCTCTCAAACTATAACTGCTTATCTTATTAAATCTCTTCAGGGAAAACCAGGAGGTGATGGACCACCAGGTCAA[A/T]AAGGAGAGCGTGTATGTGCATCCAATATTATATTCCGAAAACTTGTAAATTATATACACAGTTGAACTCTAATTATGAAATGTATTTCTTATTGAAACAGGGAGATGTAGGAATTGAGGGAAGCATTGGAGGTCCAGGACCACCGGGTATAAAAGTAAGCCTGCGGTTCACTCTTAATGAAGAGTTATGAATTATTTACAATCTCTTTTAATTTATTCAAAATTTTTTGTTACTCCATTTCATTTGCTTCTATGATAATAAAACAAAGCTCAGAGCCACTTTTTTTTGTTTTAGGGTGCCATTGGAAAACCAGGAAATCTTGGACCCTCAGGTGATCCAGTAAGATTACCTCAAACAGCTCCTTAATATGTTAGACGTCTGATTGTTTCTAAACACTTTTATTATGATTTATTACATTATGTTGTACACATTTAGAATTTTAGTTTAAATATACATTGAGCATTTTCAGTATGTTGTCATTCATCTACATTTCCCTCTGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21230
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000098151 None None 190 None 7
ENSDART00000125681 None None 185 None 8
ENSDART00000128489 Nonsense 44 103 3 5
ENSDART00000129712 None None 114 None 6
ENSDART00000134775 Nonsense 176 1125 11 52
Genomic Location (Zv9):
Chromosome 8 (position 15383480)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 14828824
GRCz11 8 14866529
KASP Assay ID:
2260-0307.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAGCCACTTTTTTTTGTTTTAGGGTGCCATTGGAAAACCAGGAAATCTT[G/T]GACCCTCAGGTGATCCAGTAAGATTACCTCAAACAGCTCCTTAATATGTT
Long Flanking Sequence:
CCTCTGCATTGTGATCAATGATGTTGAAAACACTTGAATACAACCTAGTTGTTAAATCAATCTGAAATTCGGTATAGTCACTGAGTGTGTTTTTCTTTCCTTCCTCTCTCAAACTATAACTGCTTATCTTATTAAATCTCTTCAGGGAAAACCAGGAGGTGATGGACCACCAGGTCAAAAAGGAGAGCGTGTATGTGCATCCAATATTATATTCCGAAAACTTGTAAATTATATACACAGTTGAACTCTAATTATGAAATGTATTTCTTATTGAAACAGGGAGATGTAGGAATTGAGGGAAGCATTGGAGGTCCAGGACCACCGGGTATAAAAGTAAGCCTGCGGTTCACTCTTAATGAAGAGTTATGAATTATTTACAATCTCTTTTAATTTATTCAAAATTTTTTGTTACTCCATTTCATTTGCTTCTATGATAATAAAACAAAGCTCAGAGCCACTTTTTTTTGTTTTAGGGTGCCATTGGAAAACCAGGAAATCTT[G/T]GACCCTCAGGTGATCCAGTAAGATTACCTCAAACAGCTCCTTAATATGTTAGACGTCTGATTGTTTCTAAACACTTTTATTATGATTTATTACATTATGTTGTACACATTTAGAATTTTAGTTTAAATATACATTGAGCATTTTCAGTATGTTGTCATTCATCTACATTTCCCTCTGTTTGTATAAATATGTAATGCTTGATAAGTTGTTGATTGATTTCTAACAACAGAATTATGAGGTATTAAATATTTATTATGTAACAGTTTAATAAAATCACAGCAGGCTACAGCACTTGTCACAATAATCCCAAACGGAATTTTTAATCACATTGTGCTGCCCAAACTAAGAGAAGCTACCTTTTGTGAAATTTTTTCTTGTTGTCTTTGCTTGAAACCTTCAGGGTTTAAAAGCACGTCGTGGAATGAAAGGAGAATCTGGCCAAAAGGGAGATCAAGTGAGTTCACTGAACTATTTACAACAATTCTGGCCAAGTAAACAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21231
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000098151 Essential Splice Site 154 190 7 7
ENSDART00000125681 None None 185 None 8
ENSDART00000128489 None None 103 None 5
ENSDART00000129712 None None 114 None 6
ENSDART00000134775 Essential Splice Site 551 1125 30 52
Genomic Location (Zv9):
Chromosome 8 (position 15392454)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 14837798
GRCz11 8 14875503
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTTGCACATTCTTGTTGTTTTATGTTTTCTGTGGGTTTGTGAATATTTA[G/T]GGTCATCCAGGTGTAAGAGGTCAATCCGGATTAGTAGGACAGTACGGTCC
Long Flanking Sequence:
GTTATCATGAGCTGATGCTGGAACAGCTGAGAACAATCATAAGCACGTGATCCTCTCGAAATTAGTTTTTAAATAAACTTCACAAAGTATGAAGCTGATTGGTCAGTTCTTCTCACGTGACTCTTGGTACGCTTGTGGTATTCTGAAAGGTTGAGATGTTTTCAACTAAGTGCACCTGAAAAACATGTCGCGCCCTTCAGGTTTCAGATGGAAAAGTGCAAATTCCATCAGGCTGTAGCACTTCAAATACACATCCTGGTTCAAAAACACTTTGGGCATTTATAAGAATATTTACACATGGTGTAAACTTGTGAAAAAGATGTTGTGTGTTTGTTTTTGTCAGGGAATGAGCGGTGCTCCAGGGCAGAAGGGAGATCCTGGATCCTCTGGTGAAAAAGTGAGGATTTTTTTGATGAGGATTGCATATGTGTTTTGGTGCAAGAGATAATGTGTTGCACATTCTTGTTGTTTTATGTTTTCTGTGGGTTTGTGAATATTTA[G/T]GGTCATCCAGGTGTAAGAGGTCAATCCGGATTAGTAGGACAGTACGGTCCTGGTGGAAACATGGGAGAAGGTGGAGATAAAGGTGACAAAGGTCTACCTGGACTTGCTGTGAGTGCCTCGCCCTTCTTTATGCACGATGAAGCTATTGAAGAAATACATGGTCATATTTACAGTTTTTTTTACATATAGGGTGAGACAGGGACAACAGGGCCAATAGGTCCAAGTGGTGTTATAGGATTGCCAGTAAGTTTGGACTACTATATTTGAGGTATTGTATTTTTTGAGATACCCATTACAGATTTATGTTTCATCTAAATGTAGGGTTTGACTGGAAAAGAAGGATTTGGTGGACAAAGTGGAAAACATGGGCCAAAAGTATGTTTTTTTGCTTGTTATTTATTATTTTGGTACCATATTTATAGAAATAATATGCAATGACATACATCACACTAACTTACATCTTTAATCGAGTAATTAAATTAACTTTTTTGTGCACTGTA
Associated Phenotype:
Not determined