Busch Lab

ZMP

chordc1

Ensembl ID:
ENSDARG00000017067
ZFIN ID:
ZDB-GENE-040426-1288
Description:
Cysteine and histidine-rich domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7T3F7]
Human Orthologue:
CHORDC1
Human Description:
cysteine and histidine-rich domain (CHORD)-containing 1 [Source:HGNC Symbol;Acc:14525]
Mouse Orthologue:
Chordc1
Mouse Description:
cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 Gene [Source:MGI Symbo

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa45407 Nonsense Mutation detected in F1 DNA Not yet available
sa45103 Nonsense Mutation detected in F1 DNA Not yet available
sa15475 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa45407
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000024514 Nonsense 175 341 7 11
ENSDART00000024514 Nonsense 175 341 7 11
Genomic Location (Zv9):
Chromosome 10 (position 25835288)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 25239246
GRCz11 10 25209922
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCTGCTTTTCAGACATTCGCTGGACAAGCCAGTGATGATGAGACCTGTT[T/A]GTATCACGCTGGCGTGCCTATTTTCCATGAAGGGTAAATTAGCTACTGCT
Long Flanking Sequence:
CTTCAACATTAAATTTACTTTAGAGTACAACTAATTCTCTTTAGCAATCCACCAAGCTGAAACTCACATTAATGATTAACAATAATAAATGACTGAAAATTGACATTTTTTATTGTCTTTATAGTCCAGATGAGCCTTTTTCTATCCTGCAATCGAAGATCTCCCCTTCACTCAAACAGGCTTTAGAAAAGCTCAAATTAACTGAGGAAAATGCACATGAGATAAAAGGTAAGAAAAGCTAGACCCTCCTTTTCCCTCCCGTTCCATATTTGTCTTTTATTCTGATGCATTTTATTCTCTTTCTTGTATTATAGAGGAGGATAGTGATGAAATTAAGATAGGGACGTCCTGTAAGAATGGAGGCTGCAGTAAGGTACTGTTCTCTCTGCCTGCTTCTTAGATTAGAAACCATGACACATTGAGTCTTTTTAGTCCATTATAAACAATGGGTTCTGCTTTTCAGACATTCGCTGGACAAGCCAGTGATGATGAGACCTGTT[T/A]GTATCACGCTGGCGTGCCTATTTTCCATGAAGGGTAAATTAGCTACTGCTAGAAAAGTATGGATGGAGAAATCTCAGATGTATCCGCAGACTCCGCAATTAAGGCTTTTTTTATCTTTCCTCATAAAAGGATGAAATATTGGAGCTGCTGTAAGAGGAAAACCTCAGACTTCAACACGTTTCTGTCTCAGGAGGGTTGTACCCGCGGAAAGCATCAGTGGAAGAAAAAAGATGCAGTAAGTGTCTGAGATGGGATTTAAAAGTCAAAGCACTACATTACTTGAATTGATTTTTTTTAAATCCTCTAACATTTCACAGTTATACTGTATCTTTTCATTCAGTCAAATAAAGCAGCGTAACAACTAGGGCTGCAAATTATATCGTTTCAGCATCGAAATGTCCGCATCCGCAATAGTCACATCACAGGATCTCAATGTCAAGTATACCAGTAGCTTGTAGATTAATAGAACGTTTAACCATTTAAAGTGTATTAATAGCAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45103
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000024514 Nonsense 175 341 7 11
ENSDART00000024514 Nonsense 175 341 7 11
Genomic Location (Zv9):
Chromosome 10 (position 25835288)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 25239246
GRCz11 10 25209922
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCTGCTTTTCAGACATTCGCTGGACAAGCCAGTGATGATGAGACCTGTT[T/A]GTATCACGCTGGCGTGCCTATTTTCCATGAAGGGTAAATTAGCTACTGCT
Long Flanking Sequence:
CTTCAACATTAAATTTACTTTAGAGTACAACTAATTCTCTTTAGCAATCCACCAAGCTGAAACTCACATTAATGATTAACAATAATAAATGACTGAAAATTGACATTTTTTATTGTCTTTATAGTCCAGATGAGCCTTTTTCTATCCTGCAATCGAAGATCTCCCCTTCACTCAAACAGGCTTTAGAAAAGCTCAAATTAACTGAGGAAAATGCACATGAGATAAAAGGTAAGAAAAGCTAGACCCTCCTTTTCCCTCCCGTTCCATATTTGTCTTTTATTCTGATGCATTTTATTCTCTTTCTTGTATTATAGAGGAGGATAGTGATGAAATTAAGATAGGGACGTCCTGTAAGAATGGAGGCTGCAGTAAGGTACTGTTCTCTCTGCCTGCTTCTTAGATTAGAAACCATGACACATTGAGTCTTTTTAGTCCATTATAAACAATGGGTTCTGCTTTTCAGACATTCGCTGGACAAGCCAGTGATGATGAGACCTGTT[T/A]GTATCACGCTGGCGTGCCTATTTTCCATGAAGGGTAAATTAGCTACTGCTAGAAAAGTATGGATGGAGAAATCTCAGATGTATCCGCAGACTCCGCAATTAAGGCTTTTTTTATCTTTCCTCATAAAAGGATGAAATATTGGAGCTGCTGTAAGAGGAAAACCTCAGACTTCAACACGTTTCTGTCTCAGGAGGGTTGTACCCGCGGAAAGCATCAGTGGAAGAAAAAAGATGCAGTAAGTGTCTGAGATGGGATTTAAAAGTCAAAGCACTACATTACTTGAATTGATTTTTTTTAAATCCTCTAACATTTCACAGTTATACTGTATCTTTTCATTCAGTCAAATAAAGCAGCGTAACAACTAGGGCTGCAAATTATATCGTTTCAGCATCGAAATGTCCGCATCCGCAATAGTCACATCACAGGATCTCAATGTCAAGTATACCAGTAGCTTGTAGATTAATAGAACGTTTAACCATTTAAAGTGTATTAATAGCAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15475
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000024514 Nonsense 234 341 9 11
Genomic Location (Zv9):
Chromosome 10 (position 25837802)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 25241760
GRCz11 10 25212180
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGTATGTGTGCAGGGAAAGAAAGTTGTACCTTGCAGGTTTGATTGGCAC[C/T]AAACAGGAAGTCAGGTCATCATTTCCATTTATGCSAAAAACTCAGTACCA
Long Flanking Sequence:
TGCATGTTCTCCCTGCATTCGCGTGGGTTTCCTCTGGGTGGTCAGGTTACCCCCACAGTCCAAAGACATGCGGTACAGGTGAATTGGGCAAGCTAAATTGTCCATAGTGTATGAGGGTTTGTGTGAATGAGTGTGGGTGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGAACATCCTCTGCGTTAAACATGTGCTGGATGAGTGGGCGGTTCATTCCGCTGTGGCGACCCCAGATTAATAAAGGGAATAAGTCGAAAAGAAAAATGAATATATCGCTAAAAAACTAAATACTGTAATATCAATTTTTTTCCAATACCTTGCAGCTCTAGTAACAACACTATAGAAGTAACAAAAACAGCATGGGCTCATATCCAATTTGCCAAATAATTTGTTGAAGACCCTGATGTTAAGTGTGTATAATTTTTCTTCATTTGAAGGGTGACGTTTTATGTATGTGTGCAGGGAAAGAAAGTTGTACCTTGCAGGTTTGATTGGCAC[C/T]AAACAGGAAGTCAGGTCATCATTTCCATTTATGCGAAAAACTCAGTACCAGAGCTGAGCTTGGTAGAGGGGAACAGCACTGTGGTAAGAAAACAGGGTCACTTGTGACATTAAATAAAATTTTAGATAAGTGATTTATACACGTTTATACAAATGTTTGTGTTTTAGCATTATTCATGTTTACATTTACAAAACAAGGTTTTTATGCTTACAGCTCAAAATCCACATTATATTTGAAGGAGAGAAGGAATTTGAGAAGCAGATCAGTTTATGGGGGGTAAGTAAAGTGTTTTTCATGAAAGCTCTATACCAGTGGTCATCAACCTCGTTCCTGAAGGGCCGGTGTCCCTGCAGGGTTTAGCTCCAACCTTGATTAGCTTGTTCAGGTGTGTATGATTAGGGTTGGAGCTAAAATCTGCAGGACACTGGCCTTCCAGGAACAAGTTCTGTGATCCCTGCTCTATACATTGAGACATTAGCATTACCAAATTATACATTGTT
Associated Phenotype:
Not determined