ZMP
PRPF6 (1 of 2)
Ensembl ID:
Description:
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:15860]
Human Orthologue:
PRPF6
Human Description:
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:15860]
Mouse Orthologue:
Prpf6
Mouse Description:
PRP6 pre-mRNA splicing factor 6 homolog (yeast) Gene [Source:MGI Symbol;Acc:MGI:1922946]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa44995 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa1110 | Essential Splice Site | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa44995
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000026812 | Nonsense | 116 | 252 | 2 | 5 |
Genomic Location (Zv9):
Chromosome 23 (position 7300444)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 23 | 7113001 |
| GRCz11 | 23 | 7046973 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATGAAGAAAAGCCAGGATGATGATGACGAGGATCTCAACGACACCAATTA[T/A]GATGAGGTACATTTCGCAGGCGTCATATTGAGTTGATGTGCCAAAATGCA
Long Flanking Sequence:
ACACAAACACAAGCTTTTTGTCAGGAATGCCCATGCAGTCACTGATCCATCAATGTAGAAAAATAATGTAAAATTATAATTTTCGCAATTAGAAAAAAAAAAAATTACATATTCACATCCAGGAAAACTCCCGATCATAGATATATGTGTATATGTGTATATCTCTGGCTTTGGATGGCCACAGAACCTCCACTGTACCTTGGTCCCGCATTCATTTCAAAGGAGCGCTACCCTGTACCAAGATGGCAATGCAAGAAGTTTGCTCCAGTCTTCGATGTAATAAAATCTATTGGAAACCATATGCTGAATTTCTTTGTTGAGTTGTAATTCAATGTGCTCTGCAGTGCCACGGGTTTCACCACACGATCTGATATCGGTCCTGCTCGTGATGCCAATGACCCAGTTGATGATCGCCACGCACCTCCGGGGAAGAGGACGGTGGGTGATCAAATGAAGAAAAGCCAGGATGATGATGACGAGGATCTCAACGACACCAATTA[T/A]GATGAGGTACATTTCGCAGGCGTCATATTGAGTTGATGTGCCAAAATGCAGCAGAATATTATTAATCTATGCCTCTATATCCTGTATCCTCTAGTTTAACGGCTATGCGGGCAGTCTGTTCTCCAGCGGGCCGTATGAGAAAGATGACGAGGAGGCCGACGCTATTTATGCTGCACTGGATAAAAGAATGGATGAGAGACGGAAAGAAAGAAGGTGAGCTTGACCTTTCTTCTGTCGTCTACACTTGCTGTTTATGTAGAGCGTTTGGGTTGATTTGACTAATGTGTCTGCAGGGAGCTGCGAGAGAAAGAGGAGATTGAGAAGTATCGTATGGAGCGGCCTAAAATTCAGCAACAGTTCTCAGACCTGAAGGTTTGTGTGGCTTTTATAAATATCAAAAAAAAAGTTGAAGAATCCTAAGATTCTTCAGAATAGTCCAAGTTTAGCGTGAAGACAAATAAAAAAGGATCAGACTATGCAACAGGTTTCCATCAGTTAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa1110
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000026812 | Essential Splice Site | 158 | 252 | 3 | 5 |
Genomic Location (Zv9):
Chromosome 23 (position 7300659)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 23 | 7112786 |
| GRCz11 | 23 | 7046758 |
KASP Assay ID:
554-1012.1 (used for ordering genotyping assays)
KASP Sequence:
TTTATGCTGCACTGGATAAAAGAATGGATGAGAGACGGAAAGAAAGAAGG[T/C]GAGCTTGACCTTTCTTCWGTCGTCTACWCTTGCTGTTTATGTAGAGCGTT
Long Flanking Sequence:
TTCAAAGGAGCGCTACCCTGTACCAAGATGGCAATGCAAGAAGTTTGCTCCAGTCTTCGATGTAATAAAATCTATTGGAAACCATATGCTGAATTTCTTTGTTGAGTTGTAATTCAATGTGCTCTGCAGTGCCACGGGTTTCACCACACGATCTGATATCGGTCCTGCTCGTGATGCCAATGACCCAGTTGATGATCGCCACGCACCTCCGGGGAAGAGGACGGTGGGTGATCAAATGAAGAAAAGCCAGGATGATGATGACGAGGATCTCAACGACACCAATTATGATGAGGTACATTTCGCAGGCGTCATATTGAGTTGATGTGCCAAAATGCAGCAGAATATTATTAATCTATGCCTCTATATCCTGTATCCTCTAGTTTAACGGCTATGCGGGCAGTCTGTTCTCCAGCGGGCCGTATGAGAAAGATGACGAGGAGGCCGACGCTATTTATGCTGCACTGGATAAAAGAATGGATGAGAGACGGAAAGAAAGAAGG[T/C]GAGCTTGACCTTTCTTCTGTCGTCTACACTTGCTGTTTATGTAGAGCGTTTGGGTTGATTTGACTAATGTGTCTGCAGGGAGCTGCGAGAGAAAGAGGAGATTGAGAAGTATCGTATGGAGCGGCCTAAAATTCAGCAACAGTTCTCAGACCTGAAGGTTTGTGTGGCTTTTATAAATATCAAAAAAAAAGTTGAAGAATCCTAAGATTCTTCAGAATAGTCCAAGTTTAGCGTGAAGACAAATAAAAAAGGATCAGACTATGCAACAGGTTTCCATCAGTTAAATGTTATGATTTATTTCAAAACTTGAACGAATGATCTGTCTAACTTTTACAGCATTTATCAATTAACATAGTGTAAATATTAAGGGTGTAACGATATTACAAACCGAACCAAAATATTGCGATACAGCAACCACGATACAGAGTACCGCGGTACTGTCATGCTCCTGCTTCCCATTGTTGAGGTTGACGTAACTTGTCTCTAACTAATTGAACCAA
Associated Phenotype:
Not determined