Busch Lab

ZMP

ncl1

Ensembl ID:
ENSDARG00000058861
ZFIN ID:
ZDB-GENE-030131-8788
Description:
Nicalin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NZ07]
Human Orthologue:
NCLN
Human Description:
nicalin [Source:HGNC Symbol;Acc:26923]
Mouse Orthologue:
Ncln
Mouse Description:
nicalin homolog (zebrafish) Gene [Source:MGI Symbol;Acc:MGI:1926081]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa44981 Nonsense Mutation detected in F1 DNA Not yet available
sa10449 Nonsense Available for shipment Available now
sa15700 Nonsense Available for shipment Available now
sa44980 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa44981
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000081801 Nonsense 229 572 6 15
ENSDART00000132942 Nonsense 229 571 6 15
Genomic Location (Zv9):
Chromosome 22 (position 4949203)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 4860449
GRCz11 22 5244824
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTTGTTCCTGCATTGAGTGTGTGTGTGTTTTCCTCCAGTGGCTGTCGTA[T/A]GGCGCGGACTCAAACGGCAGTGGCGTCGCTATACTGCTGGAGCTTGCGCG
Long Flanking Sequence:
CGTTGCCATGGAAATATAAAAGTTCCGTTCTAAATAACTCCCGAAAGGAGGAATCAGCCTAAGTAATTAAAACATATGTGTAAATGGGGTTAAATTAACGATAACTAAACAAGATCAGCTTTCCTTCACGTCCAAAAGTGCATTTTTGCCATTAAATTTCAGCCAAGCACTGTTGTGGGGCGATAGGTACACTCTTGCACATTTCGGAAGACTTTCATCTCTTAGTTATCTAAAATAGAGCCAGAATCGAAAAAATACAACAATCGTGAAATTCATTACCACCGTAATAGAAACGAAATAGTGTTTTGTCCGAAAAAAATTTTAAACTTCATCCTTGCCGAACACTAGAGTTCAACTCTAACATTGTAAGTACCCCTGTATGCATAAAATAGCATTGGACCACCCCTTTATTTTCGGTTGGACAATGTTAATATGATGTGTAAACGGGGCTGTTGTTCCTGCATTGAGTGTGTGTGTGTTTTCCTCCAGTGGCTGTCGTA[T/A]GGCGCGGACTCAAACGGCAGTGGCGTCGCTATACTGCTGGAGCTTGCGCGACTGTTTTCCAGACTGTATTCCTACAAGAGGACTCACGCTGGGTAACACTTGCATTTTATTTAGCATCTTTTTTTTTTAAGTGGATCTCTTTTTGTGCTTTAATGTTTTGTAAATGTATTGGTTTAAAAAAAAAACTTATAAAAAATTGTTAAATAGTGCAATGCTTTTTGTGTTTGTAGATATAACCTGCTGTTTTTCTTGTCGGGAGGCGGAAAGTTCAACTATCAAGGCACTAAACGCTGGCTAGAGGACAATCTGGATCACACAGGTGATTAGGCTTGTTGCTATTTGTTACCATCTAATTATAGTTATTTAATCTAACCATAATCACAACAGATAACTGTGAATGCTGCAATTCCTTTAACAATCACAAGGGGGAACCATAAACCTAAATAATCAGGCGCTGTTTTGACGCTTTTGTGCTTTTTACTTTCACTTTCAGATTTGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10449
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000081801 Nonsense 452 572 11 15
ENSDART00000132942 Nonsense 452 571 11 15
Genomic Location (Zv9):
Chromosome 22 (position 4945743)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 4856989
GRCz11 22 5241364
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCATTGTGTCATCCAGGGCGTCACCGGAGACCTGGAGATCTTCACTGAA[C/T]AGATGGTGAGTATGAAGCACAAAANTACCATGTTCATAACATTTGGTACC
Long Flanking Sequence:
AGTTTCTTTAATTTTTTAAATTCTTTTCTAAGCTTTATTATTTTATTATTTACAGTTTTTGTAACTTGGGTATTTAGTACATTTAATTATCTATAATACAATTGTTTTATATAGTGTATTACAAATGCACAAGATATATATATAAATGCAGATATATTATGTCAAAACAAATGTTTACTTTGGATGCGATTCGTCTTTTTTTAAAAATAATTGTGGTTTTAAAGTGTTGTTAGTAATGATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATGTACTCTTTTTAAACGCTTTAGATTTACACAATTACAAAAATCTCATAACAATTTTCTTCGTTTTATTTTGTAATTTCAGCTTTGTTTAATATTGTTCTTATATTACTAAAAAACAATAAAAAGTTATATTAAATAATCATTGTGTCATCCAGGGCGTCACCGGAGACCTGGAGATCTTCACTGAA[C/T]AGATGGTGAGTATGAAGCACAAAAATACCATGTTCATAACATTTGGTACCGCAGTTGAAACTTTATTCTTCATCAGCACGATATTCTTACATTATATTAGCAACATTTTAACTCGTGGTTAAGGAATAGTTCATCCAAGACTGAAAATCCTGTCATCCTTTTAGGATTTACCAGTTTGAGTTTCCTTCTTCTGTTAAACTGGAAAGAAGATATTTTGAAAAATGTTAGAAACCTACAACTATTGACTTTCTTAGTATTTCTGTTCAACAGGAAACTCAAAGGTTTTGAACCACTTGAGGGAGATAAATAATGTGTACATTTTCATTTTTGGGAGTACTTTAACGCACACTAACAGAATGTCTAAAACACAAACAATTTGCTAATTCACTTTAGCAGTTTTCCTCAGTCTGCAACAATTAGTGGGTGAACTATCCCTTTATGTACCTAGTATTTTACTTAAAATGAATGGTATTTACATTACAAGGTAAACAGCGGAGCTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15700
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000081801 Nonsense 504 572 12 15
ENSDART00000132942 Nonsense 503 571 12 15
Genomic Location (Zv9):
Chromosome 22 (position 4944899)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 4856145
GRCz11 22 5240520
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGAGCATCAGCTCAGCCGATACCTGAAGGACGTCAAGAGACACTTGGTG[C/T]GAGCAGACAAGAGGTCAGTCTGCACTCGCCGCTGCTGGAGTRGGCAAAWA
Long Flanking Sequence:
GCACACTAACAGAATGTCTAAAACACAAACAATTTGCTAATTCACTTTAGCAGTTTTCCTCAGTCTGCAACAATTAGTGGGTGAACTATCCCTTTATGTACCTAGTATTTTACTTAAAATGAATGGTATTTACATTACAAGGTAAACAGCGGAGCTGACACAACCCTGCGGTACTTCAACATTTGTTATAATAGCAGATGACTTTGTTCACTTTGACTCTCTGAACTCTACTAGTGAGAAATGAAATATACCAATGAGTCAAATAGAGATTACCACCTAACAAAGCACGTTTTAAAGCTACTATGTCAGACTTTTTTCGACGTGTCTCACGGATTAGTGTTTGTGGTCAGCAGGTGCAGGAGGATCAGCTGGCGTCTCTGGTGGACTGGTTGACCGCTCAGCCTCGAGCCGCTCAGCTTCTGGATAAAGACAGCAGCATCATCAACACGCTGGAGCATCAGCTCAGCCGATACCTGAAGGACGTCAAGAGACACTTGGTG[C/T]GAGCAGACAAGAGGTCAGTCTGCACTCGCCGCTGCTGGAGTGGGCAAAAATAATGACTTTGGTTTCAAAAATGTTTAACACGTCCGTGTTCTGCTAACATTTGAGTGCTGTTGAGCGTGTCTTTAAATGTGTTGTATGTAGTTTTTAACTCTTAAGGCTGGAAAAGACGGAATTCACTTGAAAAATATGTCATTTTGTTGTTGAGTATTGAGATAACAATATTTCTTATGATATGACATTACAATAAAACATAATATACATCAATATAAAGATATTTTATTAGATCTGTTTTTAAGTAATTTATTTAATGATGTTAAAATAAACAGGTTAAAGATATTTTTCACACTAAAAACAGCATCAAGGTGCAAATATTAAGTCAGTGAAAACCTCCACAGATATTCTGATTCTGATTGGCTGTTGTCATTTTAGTCTCATCTCGACTCCCGCCATTACTGTTTATTTTTAGCTTTGGTGCAACTTTGAGCCGCTCCAGCCAATAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa44980
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000081801 Essential Splice Site 526 572 13 15
ENSDART00000132942 Essential Splice Site 525 571 13 15
Genomic Location (Zv9):
Chromosome 22 (position 4941775)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 4853021
GRCz11 22 5237396
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTGAGTTTGTGTTTTATGATCAGCTCAAGCAGACCATGAATGCTTACAG[G/A]TGAGATCTGAAGCCATTTGAAGTTTAAATGTTAAGGATTACTTCTCTTTC
Long Flanking Sequence:
TGCAGATTAGAGCAGAAGCTCTATTGAATATACTGGGGTAAAATAAATGCTCATATTATAAAGACATGGTGGGGGGGAATGTAATTTAATGCAGTGCTTCTTGTACAATCTGAGACCCACTTTATATCGGATATCACTTAGCCAGTGGAGATCGCTGATTTTTAAAGAAAACAGACCTTAAACGTGCCGATTTTTGCATGCAATTCACTGGAAACGATTAAGCCAGGTTACTGTCAAATTAAAAGTCCTATTAGCGTGTTTCTGCATATACCCTATTGGCCAATCAGCAGTGTTTAAGCACTCAAATGTTACCATGAAATGTTTTTTTTTTTATTTCAGTCATAATTTTGGTAGCAAAGTCCATACTTATTCTCATTGCTTCAATCTGGTTTTATACCCATCTCCAGGGGATTGACTGTGCCTTATTATTATTTTTTTTTTGGCAGAGACCCTGAGTTTGTGTTTTATGATCAGCTCAAGCAGACCATGAATGCTTACAG[G/A]TGAGATCTGAAGCCATTTGAAGTTTAAATGTTAAGGATTACTTCTCTTTCTAATAAATTGCTCACTCGCTTGTAATCCAAGATGATCAATTCCTGCTTTCAATTAAATGTGAATTACAATGGTAATTTAGTATCAAACAACAGCATAACAACAGAGACGTGTCACACACATCTGTAGTAATCTCTGTGAATAGAAAGGGAAAATAATAGACAAAATATACTGTTTCTTTTGCTTATTTTGCAAATAATAATATTTGAATAAAATATTCTGTATTTAACACTTCACGTTGAACCTAGTTTAAATAGCAGGTAGCTTAGGATTTAAGGATTGTTTTTATATCCGCTTAGTAGAGATGCATTTATAAGTATGAATATAAATGCAACCATTTTGACAAAATGGATAGTTATTTGATCAGAGAAAATGCATGTGAATGGCTGTAAACAGGCCTTTAGCCGCCTTTCCACTGCACATGACATCTGAACACGACTGTCGGAATACGC
Associated Phenotype:
Not determined