Busch Lab

ZMP

agrn

Ensembl ID:
ENSDARG00000079388
ZFIN ID:
ZDB-GENE-030131-1033
Description:
agrin [Source:RefSeq peptide;Acc:NP_001170923]
Human Orthologue:
AGRN
Human Description:
agrin [Source:HGNC Symbol;Acc:329]
Mouse Orthologue:
Agrn
Mouse Description:
agrin Gene [Source:MGI Symbol;Acc:MGI:87961]

Alleles

There are 13 alleles of this gene:

Allele Name Consequence Status Availability
sa15437 Essential Splice Site Available for shipment Available now
sa381 Splice Site Available for shipment Available now
sa11435 Essential Splice Site Available for shipment Available now
sa12413 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa15437
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111465 None None 156 None 3
ENSDART00000114067 Essential Splice Site 294 1787 4 32
ENSDART00000134993 Essential Splice Site 219 1712 3 31
ENSDART00000147313 None None 156 None 2
Genomic Location (Zv9):
Chromosome 23 (position 24063467)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 23850033
GRCz11 23 23776584
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGATGCGCTCTTCAGAAACAGATACAGATGCAACACAAAGGACCATGTGG[T/G]AAGTCCAAACACAANNNNNNACACACACACACATGCATTGATGCCACTCW
Long Flanking Sequence:
CATTTTTGCACCATATGTGAACCCGGCAATGTTTGACATAGATACATGTTTGTGTGAATAGTAAAGGGGAGTCACTCCAGATCCTACAATGTTTACTTAGATAGCTTGGCTGTATAGGATTCAGTTATCATCATCATAAATAGCCAAAACCAGTGTGTACAGAATCCAGATTAAGCACTACGCTTACTACAAATTGAACTACACTTCCTCCCCCTCACTTTCTTTTCCTTCTTCCTATAAGTCAAACGATAACTTGTTTCTCTGCTTTTTGGGGCAGATCTTAACCTGGAGAGCCCCTGCCTGAAGAAGACCTGCGAGTTTGGAGCCGTGTGCGTGGTGAAGAACAGCGAAGCAGTGTGTGAATGCTCAGACGCCTGTCCGCAGGACCAAGACCCTGTTTGCGGCAGCGATGGGCACACGTACAGCAGCTCATGTCAAATGAAGGCCATGGGATGCGCTCTTCAGAAACAGATACAGATGCAACACAAAGGACCATGTGG[T/G]AAGTCCAAACACAAACACACACACACACACACATGCATTGATGCCACTCACTCCCTCACTGCCTTTCATCCTCGTCCACCCCCTGCACTTAAGCACTCCACCGATATTTCAAGAGAGGACTGTAATTTTCCTCCTCCGCAACCTTTTTTTTTTGTTGAAACGATGCACTTAAGTTAGAATTAAAGAGGGCAGCATCCTTCACAGTAATTGTTTGCGTGAGTCATGGGTTTTTTTGTCGGGCTTTTGTAAGCTCGCTCTAGATAAGTCTACAGAGAGGCCTGCTCGCCCCCCAAACAAACGCGTGTTTATGTGCGTTCTTTACAAAAGACTTGTAAATCATTTTCGATGGCTGTCTTTGTGCTTTCGCTTGGGAGGGGAATATTAAGTGGATTTTTTTTTTACTGGGAAACTTTGAAAAGCCTGTCTCGTTCGCTGTCAGCTTACGTTCAGGAAGAATGAGGTAGAACCATTGTGTCATGCGGTTTATACATGCGTGTGTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa381
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > C
Consequence:
Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111465 None None 156 None 3
ENSDART00000114067 Splice Site None 1787 None 32
ENSDART00000134993 Splice Site None 1712 None 31
ENSDART00000147313 None None 156 None 2
Genomic Location (Zv9):
Chromosome 23 (position 24103335)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 23889901
GRCz11 23 23816452
KASP Assay ID:
554-0361.1 (used for ordering genotyping assays)
KASP Sequence:
CATTAAAATCTGTATGAAACCCAACAGCTGTATATGTGTGTGTGTTTTTC[A/C]TCAGACTGTGGTTCAGGAGGCTCCGGCTCGGGATCTGAGACTTGTGAACA
Long Flanking Sequence:
AACAACAACCATTAAATTACAGAAACTTATCGTAAAATAACTGACGTTAAATTTAAAAAATGACTGTAAATTTAAGGAAATTTCTGTGATTTAACGTCCGTTATTTTACGGTAAACTTCTGTAATTTAACGGACAATGTTTTATGTTGTTGTTTTTTTTCCAGCACTCCAGCTGCCGGGAAAAAAAGTGAAGTAACAGATCTTTCTTTTACAGTGTTGGGTTACTCTGTTTTTTTTTTCTGTTTCTGTTTTTTATTCGCCTTTGAGAGTGATTTTGTATAACAGACTTTTTTTTTTTTTAAGAATTAGTAAAAAACAGAAGTTTTATTAGGATGGTGACAAATATGTAACATTTTACTGACAAGAACCGTAAAACATTTTAATTCCACCTTTAAAAACTCTAGCCAGCTAGACAGGTGCAGCTATAGTGCAGTTATAATCACTTCAATACCATTAAAATCTGTATGAAACCCAACAGCTGTATATGTGTGTGTGTTTTTC[A/C]TCAGACTGTGGTTCAGGAGGCTCCGGCTCGGGATCTGAGACTTGTGAACAGGACCGATGTCGCCGATATGGAGGAACGTGGGACGATGACATGGAGGACGAGCGATGTGTTTGTGAACTAAACTGTCAGATTGTGCTGCACAGCCCGGTGCGTCCCACACCACCATAACCAATCGCCCGAGCATTTGACTTTTCCAAATGTGTGCTAAATCTTGTTGAATCCATTAATCGTGCTGTGTTAACCTCTATGTGTGCTTACGCAGGTGTGCGGCTCTGATGGAAACACGTACTCCAGCGACTGTGAGCTCAAGAAGACCAGGTGCGAAAAGCAAATAGACCTGAGTGTCCAAAGCCAAGGGCCCTGTCCAAGTAAGAGACTAAATTCAGATCCATTATTCATCCTGTACTGTGTAATGTTGTGATGGCCAGTGTTGTTTTTTTTAAGATGGATAAACTTCTGATGTTCTTATTTAGAGGTTTCTGTATATATACAGTTAAAGT
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa11435
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111465 None None 156 None 3
ENSDART00000114067 Essential Splice Site 1597 1787 28 32
ENSDART00000134993 Essential Splice Site 1522 1712 27 31
ENSDART00000147313 None None 156 None 2
Genomic Location (Zv9):
Chromosome 23 (position 24177898)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 23964464
GRCz11 23 23891015
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TATGAGTGCGCCTGCCGCCAYGGATTCTCCGGACACCACTGCCAGGACAG[T/A]AAGTTCCTTATTTAATCACTTTTTAAAAATCATATTACCCAATATAGCTT
Long Flanking Sequence:
TTTAATTTGTGTTTATGATGATTATGACTTCAGCATATCTAAAAAGCTATTCCATCGCAGGGTAAATTTGTGTGGCTGCAGTTGTAGCAGCCTTTGCTTTTGGACCAATCTTCAGTGCTGAATTCACCCTCATGCTCTATCATAACATCACAACTCACAAGGCAACTTTTCACCTTGACGAGAAATCTTGTCGTGATTTAGTCTTGTGAGATATTGTAGCCCGAGGTCTCATCACACCCCTAGTATTAGCTGAAAAATATTTATCTGTGACAACACAGAAATTGTATATATAATATTGTATATCGGTCTCCACAGATTACTTTGATGGGAATTCCAATCCTGAAAGCTGATAATGCCCTTTCGTCCACTGACGTGTCCATGTATCCTAATCATCCCTGCTCCAAAGACGTTTGTGAGAATGGAGGCCGCTGCAACCCCCAGCTGAACAGCTATGAGTGCGCCTGCCGCCACGGATTCTCCGGACACCACTGCCAGGACAG[T/A]AAGTTCCTTATTTAATCACTTTTTAAAAATCATATTACCCAATATAGCTTCTCCGCCAACTCCCTCACACTCCTTAAAGGCAAGATTTGCATGCGTCTTTAGCATACATCAACATACTGTACAGCTTACTTAAAAGAAATAGCTCTTGGCAGCTCTAGCCAGTCATATGCTCCATATGTAGATTTAGCTAAATCCACGCCTCCAAACTTTCACAAATAACACCATCCTCGATTCGTATGCTTATCGCAAACACACATTGGCACAGTCGCAAAAACCTAAGAACTTTTGCTCACCTCATTAACCTTGCAGGGTCCTTGTGTTGCATCTTTAACCTTAATTAAGCCACACAAGCATGAAGCCTGCGATACATCACACTCTTTTTCTAGCTTTGCTTTAATTAACAATGCCCTGTCTCACATCGATTGGTGTAATTTCACTCCGTCTTCTCTCCCCCTTTCCAGCAATATTTGAGAAGTCCGCTGGGGACACGGAGGCCATTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12413
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111465 None None 156 None 3
ENSDART00000114067 Nonsense 1694 1787 30 32
ENSDART00000134993 Nonsense 1619 1712 29 31
ENSDART00000147313 None None 156 None 2
Genomic Location (Zv9):
Chromosome 23 (position 24190320)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 23976886
GRCz11 23 23903437
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCCAAGCCTGTGGTGCTGCGCTCCACTGTACGGGTCAACACCAACCACTG[G/A]ATACGAATTAAGGCCAGCAGGTAAAATGCTAAAAAKCWTTTCCAGYATCT
Long Flanking Sequence:
GCCTCTGGTGGATTGATGCGAGAAGAGCAGAAATTTAAGATCTTAAAAAGTGTACAAAGGAGCCTGGTGGATTTGCGAAAGCAAAACCTGCAAAAAATTATAGCTCCTGGGACATATTTTACACTCTCCAGAAATGTAAACAGGGGTACATATTCACAATGCGCCCGGGTTGCTCTATCAACTGTTAAATTTTCACCCATGGTTGTTAAACTTGCAGGTAAGTCTCAGTGGTTAACTCAGCACCTCTAAAAGAGCAATAGAATTTTGATAGCATTTCCTGTTTCTCTTTGATCTAGCGAGAAAGCCCTGCTGGTGAATAAATTCGAGCTGAGCATCAGGACGGAGGCTACGCATGGTCTGATTTTGTGGAGCGGAAAGGGAGTTGAGCGCTCTGACTACATCGCCCTCGCCATTGTGGATGGAAGAGTACAGATGACCTATGACCTCGGCTCCAAGCCTGTGGTGCTGCGCTCCACTGTACGGGTCAACACCAACCACTG[G/A]ATACGAATTAAGGCCAGCAGGTAAAATGCTAAAAATCTTTTCCAGCATCTCCACACATTTACAGTAAGGTTGTTTTTTCTGCTAGATGGGTCAAGCTAGTAGTTCAGACTTCTGCTTGCAATACCAAAATATTCAGTGTTGAGTCATTCTCAACATTTTCAGTGTTCAGGAGAAATAGAAATGTATTTATATTTGATTAGTTTATCTATAATTTCACACTTTTTTTAAATATGTTTTTTGTTTGTTTAATATGTACACTACTGTTTCATCATTTGAGGGAAGTATTTTTTTAAGGATTCTTATGTTCATGAAGGCTGATTTTATACAAAAAACAGTAATATTGTGGAATATTATTACAATTTAAAATCCTTTTTATTTTAAGATATTTTAATTACACATTATAAAGCTTCATTCAATTACAAAGCTATACAAGTCATTCTGGACTTCAATGCCACATGGTCATTTAGAAATCAACCTAATACAGATGTGTTGGCTTTAAA
Associated Phenotype:
Not determined