ZMP

pcf11

Ensembl ID:

ENSDARG00000044625

ZFIN ID:

ZDB-GENE-041114-175

Description:

cleavage and polyadenylation factor subunit, homolog [Source:RefSeq peptide;Acc:NP_001007308]

Human Orthologue:

PCF11

Human Description:

PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:

Mouse Orthologue:

Pcf11

Mouse Description:

cleavage and polyadenylation factor subunit homolog (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:

Alleles

There are 6 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa23932	Essential Splice Site	Available for shipment	Available now
sa23933	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa23932

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000065562	Essential Splice Site	544	1457	5	16

Genomic Location (Zv9):

Chromosome 21 (position 21997956)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	21	22846369
GRCz11	21	22882974

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

GATCTAAAAGATGGCAAGAGGTGGAGGAGTGGATGGGAAGAAAACAAACA[G/A]TATGTCATTTCAATTACTTGCACCTTTTGTCTTAATTATATTCAATTTGT

Long Flanking Sequence:

AAGAAAAGAAGCTCAGAGAAAAAAGATAGGGATGAAGGTTCCAAAAATTTGGATCATCAGAAGTTAAGCAGCAACAGAGGCAAACTTATAAATGGCTCTGTGAACAAGCATGAAAAGCTAGAGACCTTTCTGAAACAGGAGATCAAAGTGAACAAAGCAAATGTTAGAAAAAGGTCAAGATCGCGTTCTCCACCCGTACATTCTCCTAAAAGAAAAGAGAGGCGATCGTCTCCAAAGAGAAAAACCAGGAGCATTAGTCCACCTCCCAAGTCTGGAAAGTCTAGACTCAGTAAGCATCCACATGATGATGCTTTCCCACAACCAAGTGCAAGAGATGAACGTACAAAGAAAAGTGTTCCTGATTCGAGACGACCAAAAAGGCCTCTTGAGGATAGACCTGCTGAAAAGAAAGATGGATCACTGCAAAGAATTTCTGCTGCAGAGCATAAAGATCTAAAAGATGGCAAGAGGTGGAGGAGTGGATGGGAAGAAAACAAACA[G/A]TATGTCATTTCAATTACTTGCACCTTTTGTCTTAATTATATTCAATTTGTAAACTCACTCAAATTCTCAACTTTGTTTTAGTCCTAAACACTCAGATACAGATCTGTCACATGGGCGAATGGGGATCCAGAAACACAAAACTTGGAACACTAATCAAAGACCACCCACACCTCGGACACCTAAGCAACATCGCTTAAGTGTTGATAGCAACATACAAATACCAGAAGCACTGCATTCTGCTAGTAAACGGGATCTTTTAAGAAAGGTGTGCTAACTTCCTCATGGTTTTGTAATGAATTTCTTTCTAATACATAGTTCCTTACAATATACATTTTTTATTTCAGGCTAGCAAAAGGCGTGCTGATGGCGAAATATCCAATGATGAATTTCTCAGCGTAGCTCATCAAATCAACCAACTTTTTCAATATCAAGAAGAAAGGCAACGATCAGATTCTTGGGATGAATCATGTGATGAGGGAGTGTATCCATCAAGAAAGAAA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa23933

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000065562	Nonsense	704	1457	8	16

Genomic Location (Zv9):

Chromosome 21 (position 21998789)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	21	22847202
GRCz11	21	22883807

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TACCTTTGCATGAAATGTATCACTATCCGCCTCATCATGAAGTATCTGAA[C/T]AATATAGTGAAAGCTTGGATGTGCATAAAATGTCAGGTGATCCCATAAAG

Long Flanking Sequence:

TTTTTATTTCAGGCTAGCAAAAGGCGTGCTGATGGCGAAATATCCAATGATGAATTTCTCAGCGTAGCTCATCAAATCAACCAACTTTTTCAATATCAAGAAGAAAGGCAACGATCAGATTCTTGGGATGAATCATGTGATGAGGGAGTGTATCCATCAAGAAAGAAACAAGAAACCATATCTGATGCTTACCTTGAGCATAAATTAAAGTTGAGAAGAACTCAGCTCCACCGTCCAGGTACAAATTTATTCACTTATAATGTTTGCATGTCCTTATCTATTGTGTAAATTGTCTGTACGTGTAAACAGGTGTTATTTTTAAGTTTCACCACTGCCAGTGATACACAAATATGCATTATGTTGTTGAAGTTGGTGTATTATAGGGGTGTAAACCTAAATTCTTTTCCTATCATGATTTGTCAATTTTCACAGTGCAAAGAGGGGGACATTTACCTTTGCATGAAATGTATCACTATCCGCCTCATCATGAAGTATCTGAA[C/T]AATATAGTGAAAGCTTGGATGTGCATAAAATGTCAGGTGATCCCATAAAGCCACTCTCTGACCATGAAGATCACAGAAGAATTGACAGGCCTCCATCCTGCACAGGGTCTACTTTCAGAAATTCGCCAAGCCCAGTTGGCTTAGATGGTATCTGTGGAAAATCCACAGTACTTCCATTTGAACGGCCATCCTCACCATCTGAAATGGATCAACAACCTGAGGGAGACATCAGCCCACGTTTTGAAAGTCCCAACAGTGTGCACTCTGGCACAGGCCCAGATGATGGTCCAATTAGCGTTGAGGGTCTTCCCAGGCACGATCATTTCTTGGAACAAGGACGAAGTGGGCGAATCCATGGTGAATCACCTGGAAATACACCAAGTCACTCAGAAGGACCTACAACGCAGGTCAATGCAGCACGGCATGATGGACCAATTCATCAACGTTTTGATAGGTACAAAAATCCTCAGGCTCCCTTTGATGGACCATCTAGCCACATG

Associated Phenotype:

Not determined