Busch Lab

ZMP

pdgfra

Ensembl ID:
ENSDARG00000070494
ZFIN ID:
ZDB-GENE-990415-208
Description:
Pdgfra [Source:UniProtKB/TrEMBL;Acc:B0CM00]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa43428 Nonsense Mutation detected in F1 DNA Not yet available
sa43427 Nonsense Mutation detected in F1 DNA Not yet available
sa29348 Nonsense Mutation detected in F1 DNA Not yet available
sa271 Nonsense F2 line generated Not yet available

Mutation Details

Allele Name:
sa43428
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103510 Nonsense 148 625 3 10
Genomic Location (Zv9):
Chromosome 20 (position 22457197)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 22571228
GRCz11 20 22470901
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAACAAACCCACATTCTGAAGTGATGCTCAGAGATCTGCAGAGCGGGGAT[G/T]AGGTTACTGTGCTTTATGACCCCAAACTTGGCTTTTTTGGTACAATACCG
Long Flanking Sequence:
ACACAGTAATGAAATGAATACATTAAATATCTCCTTGCAGATGTCTCGAAGCCATGGCTAGTTACGGATAAAGAGAAAGAGGAATTCATGCTGACACCACATTCCGACTTTAACATCACTTGCTTTGGAATGAGGAGAGTAACTTGGGTCGAACCATTACCGTTCAACATCAAAGTTCATTCTGGATTTAACTACAGTACTTTAATGATCACTGATGCGGTGGCCTCTAACACTCGTTTCTACACCTGCCAGCATGAGGATCATTCTGAAACTGAAACTGATATCTACATTTTTGTTCAAGGTACATTAGTGCTCAGATATTAAAATGAATTTGTGCGTTATGCAATTGTAAAATGATACTCATCTCTTATTTAACAGATCCCGATGTTCCATTTGTGTCTGAACACGATGCTGAGACAGATGAAATAGGCACAACAATCCCCTGCCACGTAACAAACCCACATTCTGAAGTGATGCTCAGAGATCTGCAGAGCGGGGAT[G/T]AGGTTACTGTGCTTTATGACCCCAAACTTGGCTTTTTTGGTACAATACCGCCAGGACAATACGTCTGTGAGACAACTGTGAATGGCAAAACAGTGCGGAGCATCATTTATAATGTGACAAATGACATGGGTAAGTAAGTTTTAAATCAAATTTCAACATTCTAATGAATCCTTTTTGACAAAAACAAGTGAAACATGAGCTCATAAGATTACATAAGCATCAAGGGAGATGACATATTCTTGATGACCAATAGTGGTGACATGATTTTAAGTGCACTGCAGGTGTGGGATGCTGACGCACACTTACTTCATTTTGGATCAGTATAAAATGCAATAAGAATATTTATAGCCTATCAAAGGTCACAGTTTAAGCTTTGTTTAGGAATAACTTTGAATAAGAGTGATTGGGTGTTTCTACATTGGTTTTGGACTTGGAGCATATTTGTATACTGTAAAAAAGTGGTTGCTTTACATTTTTGACTTTGTACTTTAAAATAATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa43427
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103510 Nonsense 168 625 3 10
Genomic Location (Zv9):
Chromosome 20 (position 22457135)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 22571166
GRCz11 20 22470839
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTTATGACCCCAAACTTGGCTTTTTTGGTACAATACCGCCAGGACAATA[C/A]GTCTGTGAGACAACTGTGAATGGCAAAACAGTGCGGAGCATCATTTATAA
Long Flanking Sequence:
TACGGATAAAGAGAAAGAGGAATTCATGCTGACACCACATTCCGACTTTAACATCACTTGCTTTGGAATGAGGAGAGTAACTTGGGTCGAACCATTACCGTTCAACATCAAAGTTCATTCTGGATTTAACTACAGTACTTTAATGATCACTGATGCGGTGGCCTCTAACACTCGTTTCTACACCTGCCAGCATGAGGATCATTCTGAAACTGAAACTGATATCTACATTTTTGTTCAAGGTACATTAGTGCTCAGATATTAAAATGAATTTGTGCGTTATGCAATTGTAAAATGATACTCATCTCTTATTTAACAGATCCCGATGTTCCATTTGTGTCTGAACACGATGCTGAGACAGATGAAATAGGCACAACAATCCCCTGCCACGTAACAAACCCACATTCTGAAGTGATGCTCAGAGATCTGCAGAGCGGGGATGAGGTTACTGTGCTTTATGACCCCAAACTTGGCTTTTTTGGTACAATACCGCCAGGACAATA[C/A]GTCTGTGAGACAACTGTGAATGGCAAAACAGTGCGGAGCATCATTTATAATGTGACAAATGACATGGGTAAGTAAGTTTTAAATCAAATTTCAACATTCTAATGAATCCTTTTTGACAAAAACAAGTGAAACATGAGCTCATAAGATTACATAAGCATCAAGGGAGATGACATATTCTTGATGACCAATAGTGGTGACATGATTTTAAGTGCACTGCAGGTGTGGGATGCTGACGCACACTTACTTCATTTTGGATCAGTATAAAATGCAATAAGAATATTTATAGCCTATCAAAGGTCACAGTTTAAGCTTTGTTTAGGAATAACTTTGAATAAGAGTGATTGGGTGTTTCTACATTGGTTTTGGACTTGGAGCATATTTGTATACTGTAAAAAAGTGGTTGCTTTACATTTTTGACTTTGTACTTTAAAATAATTTAAATTTAAAGACCATTAACCTGATTTTTAATAGCCTGTATGACAGAAGATTAAGTTGAATTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa29348
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103510 Nonsense 359 625 7 10
Genomic Location (Zv9):
Chromosome 20 (position 22450565)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 22564596
GRCz11 20 22464269
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTATTAATATAACTACAAAAATTGCAATGCCTTCTTTCCTACAAAGGTA[T/A]GAAAATATTCTGATTCTCCGACACCCTGTAGAAGAAGACAGCGGCATTTA
Long Flanking Sequence:
CATTTTTATCAAAGTGACACCTGGAAAAAGTTAAGTATTTTTATCATGTATTAGTGCTTAAATTTTTTTTTTTAATTAATGTATTCATTTTGTTTGTTGATTTTTAGTTGCATATTTATTATTGAAATGTTCTTGCCATAAAAATAGCCTTGGTTGCTGACATGGCATTAAATAAAAATACATTACATTACATTATTACAATTCAATTATGGTTTGGATGCATTTAATTTAAATAAAATAAAATATTATATAAACAGCTTCTCTATTTTGGTTGATGTTATTTTGGTTTGTTTTATATTTATGCATTTTGAAGTACTCAAAAATATTAGCACATGGATAAATTAATTGTGAATCAAAATGATCTAATGCCATAAAACTATTGCTTAAGTGTTCATAGTTTATGATATCTATTTGTTTTAACCAAATTAATCCTATTGAAAGGATCACCAGTTTATTAATATAACTACAAAAATTGCAATGCCTTCTTTCCTACAAAGGTA[T/A]GAAAATATTCTGATTCTCCGACACCCTGTAGAAGAAGACAGCGGCATTTATGAGATCGTTGCTTCCACCGGCTCCAGGACTTCACAATTTTCATTCAAACTCCTCATTGAAGGTACAGTATTCATTTTGTACAAACTATGTATGAAGTGCCCACATTGTTTCTTAAACCCACACCTACAGCATTTGCCTTTATAATAAATAATTGTTTTGCTTTTATACAGTCATGTTCCCGGTGCTGCCACAGTCAGTTCAGGCTCCACTGATTTGGCCCCAGAGGGAGAGTATGGAGGTGTCTCTGCACTCCACTTTCAGACTCACATGTCGAGGTCAAGCCGAGCTCTCCTGGAATGGCCCTGTTTTTATTGATGACCAGACCAACAGTGTAAAGAAAGGACTCTTTATTAGCACTGTGACAATTAGCAATGCCACAGCTGTCCATACAGGAGAGTACGTCTGCTCTTCTGAACCCTTCAACAGCACTGAGTCCACCATCTACATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa271
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103510 Nonsense 513 625 9 10
Genomic Location (Zv9):
Chromosome 20 (position 22449497)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 22563528
GRCz11 20 22463201
KASP Assay ID:
554-2795.1 (used for ordering genotyping assays)
KASP Sequence:
CCATTTGTGCCGTCCATGACCCCGTTTGAAAACCACGTGCTGACRAGTTA[T/A]GATGAAATGGAGATTCCCTGCCGTGTGACGGATCCCAGTGCCAGCGTCTC
Long Flanking Sequence:
GGTTTGTCTTTTAGCCATAGACTTTCTAATGTTATAAACAAATTTTTTGTATAGATTTTGTGAGACCTTTTTTATTTGGCCATATGCTGCTCAGAATAGGCATAAGGTAAATTTATTAGCTTAAATGTTTCCACCAACTAATTTTGTCTTGTTTAATTAAGCGTTTCGAAAGTCTGAACTGTGTTTTAACACAATTTTGTGACACATCATACAAATGAATGACTTGAATAGATTTGGTGAATTCTTATGGCTTAACTCTATTACAAACAAATCACATAACTCAAAAATATGTTTACTGAGCCACTAAACTGATACAGATGCAAAAAAATAATAAATAGCAAAAGACTATAGATTTCTTTCAGTCAAAAAATATTCAGAATATTTTTTACCTCAATTGTACATGGTGAGCTGACAATTTTATTTCTTCCCCTGCACACAGATCCACAAACCCCATTTGTGCCGTCCATGACCCCGTTTGAAAACCACGTGCTGACGAGTTA[T/A]GATGAAATGGAGATTCCCTGCCGTGTGACGGATCCCAGTGCCAGCGTCTCTCTCATCCACATGGAGACCGATCAAGTTATGCCCAGCGCCTACGACAGCAAGAGAGGATTCATCGGGCTCTTCGGCGCTGGGACGTATGTCTGCCGAGCCCTCATTCATGGACAGAATCATGACAGCATTGAGTACATTGTTCATGGATGGACAGGTGATACATATTGGATTTTGTTTTGTTATGTTTTTTTTGGCTATTCTTCAGTCATACTTTTAATTTAATGTTCCAATTCAACATTATTATTATTATTATTATTATTTTTAATCTAAAAACTGTTTTGTTCTGACATATTTTCTTCACCTGAGAAGCAAAACTGGAAAAATAATCTTAATTTTTTCATCTTTTATTTTATGTTTGTTTCCCTTAAATACTAAATATATAAAAGATTAATTTCAGAATATTTTTGGGCTTGAATAGAGTTGGACCTACGTCGTAAAATGATTATTGT
Associated Phenotype:
Not determined