ZMP
tcea3
Ensembl ID:
ZFIN ID:
Description:
transcription elongation factor A protein 3 [Source:RefSeq peptide;Acc:NP_991246]
Human Orthologue:
TCEA3
Human Description:
transcription elongation factor A (SII), 3 [Source:HGNC Symbol;Acc:11615]
Mouse Orthologue:
Tcea3
Mouse Description:
transcription elongation factor A (SII), 3 Gene [Source:MGI Symbol;Acc:MGI:1196908]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa42773 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa22897 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa42773
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000006061 | Essential Splice Site | 116 | 409 | 4 | 14 |
| ENSDART00000134037 | Essential Splice Site | 116 | 305 | 4 | 10 |
| ENSDART00000140552 | Essential Splice Site | 116 | 201 | 4 | 6 |
Genomic Location (Zv9):
Chromosome 16 (position 36534858)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 34163479 |
| GRCz11 | 16 | 34117509 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCAAGCCATCGGGATCACCCAGCAGGACTTCTCCTGAGAAAGACTCCAGG[T/C]ACGTTTGCTGATAACAATGAGAAACACGGAAGAAGTCCCGAAATAGCATT
Long Flanking Sequence:
AATGTATTTTTTATCAATTTTATTGGTTTATGTGAAGTTTCAAACAGTCTATCAATATTTTAATTATTATAGAAGAGCAAAGGCAGTAATCCTGTGGTAACAAAAAAATGTGACAAACAAAATATCAAACTTTTTAAAAGCATAATCTTTATAATGTTAAAAGAAAAAAGAAAAAAGGTAAGACACCTATCAGCAAAGATAAGTTTTTTTTAATTAGGTTCCAAACTGATGTAGAATGGTATGAGGGTTAATCTTCAGTTACGATTATTGAATGATTATTTTTATATCAGTTTTTTATTCAAAGCCCTTTAAATTTTTAATGTTTGGCACAAAAAATAGTTTCATAAATTTATCTTGTTTTGCCTATACCTATGCTTTTGTGTCTGTCAGAATCAGCTCAGAACCCAAAATCTGAGAGGCCAAATGAGGTGAAGAACGGCAGTCATCCAAGCAAGCCATCGGGATCACCCAGCAGGACTTCTCCTGAGAAAGACTCCAGG[T/C]ACGTTTGCTGATAACAATGAGAAACACGGAAGAAGTCCCGAAATAGCATTTGGAAAGTCTTCTGAAAACAAAAAGCTGTTTCTCTGCACAGATACTGATTTAAGCAGATGGTAAGATATAAAAATACTTGTGGTTTAACCTGTTTATCTCGTCAGTCTGCGAAGATCGACGGCGGAAATTAAACCAGACTTAGATTCTAACAAGAAACTTGATGAAAAACAAAGGAGAGAGAAAATCGACGCAGAGTTCAGGAAGGAAAAACGAGAAAGTAACCAGAAAAAAGAGAAACAGTCAATTAACAATAAAAAGGATCAAGAGAGGTGAGAAAAAAAGCCCAGTTCTGTGTAAAGCCCCTCTCCTCCTCCAGAATATGCCATCAGATTGAAGAGTTTTGTGTGCATTGTGTTTAGGAAAGATGCACTGAACAGTGATCATCTTCCCTCCCCGTTGACGCTTTCGTCTGTTCCACTTAAGTGTCCTCCGACTGGGGAGGTGAAATG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa22897
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000006061 | Nonsense | 163 | 409 | 6 | 14 |
| ENSDART00000134037 | Nonsense | 135 | 305 | 5 | 10 |
| ENSDART00000140552 | None | None | 201 | None | 6 |
Genomic Location (Zv9):
Chromosome 16 (position 36547150)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 34175771 |
| GRCz11 | 16 | 34129801 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACTCCACAGATTCCAAAAAGCCTCTTCCTAGGAAGCCGAGCCTGGATGGA[C/T]GAAGAGACAGGTCAGCTCAAGCATTACTCATCAACAAATCTGATGAAATC
Long Flanking Sequence:
ATTTTCAATTTAAAATCTTTACTATTAGCTTTAATTCTTCAGAAACACCTTTAAAGTATCAATAACATAGGTCCTATAACTTGTGCGCTATATTGGTAAAGTCATGCAGGTTTGGAACTTCATGAATTCATGAAAGTAAATTTATTAGAATCCTTTCAATTAAGTCTGTAGATGGCTTTTAGTGATTGGTCATCATCACCATAGCACTGAGATGATGCTTCTTTTCCAGAAAAGACACAAGAGACAATAAACTTCTCAAAAGGCCATCAATGAAGATCAAGATTGAGAGGTTTGAATGGGTGTTTTGCAACAAAATGAAGGCAGAGGGCAGCAAAAGTGCATGCAGTGTTCTAGTTTGGTCATAGGAGTTTGAGAATGTTGTTGATTGGCATGGCTCTTCAAAACAATTTGCCACTTTAATTCCCTATTTTTCTTTTCTATTTAGAAAGGACTCCACAGATTCCAAAAAGCCTCTTCCTAGGAAGCCGAGCCTGGATGGA[C/T]GAAGAGACAGGTCAGCTCAAGCATTACTCATCAACAAATCTGATGAAATCATGAGGGATTTTGAGCACATAAATTGATTCTTGCCAATCCAACATGTGTTTTCCTCTTTGCTGCAGTAAGGACTCTACTGACTCCAAGTCAAGCAATCACCTTTTGAAACGACAATCAAGTGAGCCAAAATTGGAGAGGTAAATTATCATAAAGCAGTTTGCCATTCAGTGAAATATAAATCAAAACATACTGATCTTACTGTTCACTATAAACTCTCATTTCTTCCTTCTCCAGGCGAGATTCTACTAACTCAAGGTCTGGCAGCTCACCTCAGGCCAAGAAATCCTGTGAAAGGCAAGAACTTTATTTACTGTAGCCTCATTTAGCAGTGTCTAGCATGCCTTATGGCTTAATTCTTCCTCAAGAAACTCTCTGCCAATAAAAGCATTATGTTTTCACTTTCATCCTTCTGGATAAGATCAGATGTGTTATTATTATTGAGATGAGTT
Associated Phenotype:
Not determined