ZMP

zgc:195063

Ensembl ID:

ENSDARG00000055463

ZFIN ID:

ZDB-GENE-080723-63

Description:

leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 [Sour

Human Orthologue:

LRIT3

Human Description:

leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 [Source:HGNC Symbol;Acc:24783]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa42427	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa42426	Nonsense	Mutation detected in F1 DNA	Not yet available
sa22524	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa42427

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000077823	Essential Splice Site	39	636	1	4

Genomic Location (Zv9):

Chromosome 14 (position 37565127)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	14	36004454
GRCz11	14	36344768

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CCCAGTGCACATGTGTCTACCACGGCCGCAGCGACGGCACTGGCAGCAGG[T/C]ACAGTAAACGCACTACTACACAACAGCATTTAATAAAATTTTAATAAATA

Long Flanking Sequence:

TTCTTCTTGTCATTAGCCGATTAGCGTGTGCCTGCAGAGCTTATCCTCCTCCTCCTCCAACTCTCTCACACACACACACATACACAAATAAACTCATACACACTTCCCATCCCACCCTGTTCAACTTTAGTGACCTACTCAGCCTTGAGAAATCCTCTTTCTAATCTCGGTTCCCCCTCCCGGTCCTTGCGCTGCTCGGCTTCCTGCGTACCTCTCCTCTCACCTGTTAGCATGCTAAAGGTGATGCCTGCCGGTACGGGCTTTTCTTGCGTTTTTTCGTTCTCGTCCAGGACTGATAAAGGGTTTTTTGTCCACTGATGTTCGAGTGGGGTCTGATGTGTGTGAGTGCGAGGATCCGTGGCTGTGCTTCGGCTGACTGAAGGATGTATCGTCTGCTGGTGGCGCAGGTTCTGCTGGGCTGCTGGAGTGTGGCACAACCTTTCTGCCCTTCCCAGTGCACATGTGTCTACCACGGCCGCAGCGACGGCACTGGCAGCAGG[T/C]ACAGTAAACGCACTACTACACAACAGCATTTAATAAAATTTTAATAAATACGAACAAAAGGGCAATAAAACTACAAATGTTAATAATAATAATTTAATAAAACTTCAACTCTTAATTTAATTTACATTCATTGTGTAAATCATGGTGGTGGTTCATTCCGCTGTGGCGACCCCTGATTAATAAAGGGACTAAGCCGAAAAGAAAATCAATGAATGAATGCATAAATTCAGGAATAAAATAGTAGACAAGCTATTAGATGGACATAAAGAAGAAATACAAGAGCTAAACAATATTTGAAAACTTTGTAGCTACAGATATTGCCCGTATATAGATACAATACATTAAAATAATATTTCCCCCATAAATATTAAACAAAATAACTAGACTAGATGTTGTTCAAAGATAAGAATGGGTAGACTACATTTCATATAGTTAGCTAGAGGTTTTAATTTTGCATGGTTCTTGACACTTAAGTTATATAATTTTGAGCAAAAGGCTTA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa42426

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000077823	Nonsense	602	636	4	4

Genomic Location (Zv9):

Chromosome 14 (position 37549223)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	14	35988550
GRCz11	14	36328864

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TCACCATGAAGCAGAGGACTCTAAACGGGCAGGCCAATGATCTGTGGGCA[C/T]GAAGACAGACTCAAGAGTCGGAGAGGATGTTACTGTGTTCGCGTTCGAGC

Long Flanking Sequence:

CGGACATCAGAGACATCGAGGTAGTAGAGGAGACCACTGAAACGGCGGTCTTATTGTGGAGCGCCGAAGGTTTGCCAAGCGACACGCCACTAACAGTGGTTTACTTCCCATATGACGCCAAAGACGATAAGGAGACGGTGGATACAGAAGTTGGTCAAGGGAAGCTGCTTTTGGAGTATTTGATGCCTAATCAGGTCTACACTGTGTGTTTGGTTACTAAGAGTTCTGGGAAAGAGCAGTGTGTGGATTTCAGTACTTTGGAAATTGGTGGAGAAGAAGGCCAGAATAAAGTCTTGATGATCGCTAGCGCGATTGCATGCGCTATCGCGGTGCCGCTCATCGTGGTGTTGCTTTACAAGATATTGTGTCTTTATTGCAAAGGAAACAGTAGCAGGAATAACGGACCAGATGAAGACCTTTCCAAAGACACCTACGTGAAGTTCGAGACGCTCACCATGAAGCAGAGGACTCTAAACGGGCAGGCCAATGATCTGTGGGCA[C/T]GAAGACAGACTCAAGAGTCGGAGAGGATGTTACTGTGTTCGCGTTCGAGCATCGACTCGCAGATGACATACAAAAGTGACAGCTCTAGATCTGAGTATCTGTGCTAATGTATTGACCATCGGCTTTGTGTGTTATCTTTCCACACTTGGTGTTAGTCAGGCTGTGGTAAAATTAGTTATAAAAGATTAGCACTTGGTGTGCAATCAAACTCATTGCCTTACAAAGACTCATCTTGAGCCCACATTGTATTATCTTTTTATTCATTTATTTTTTTAAGAGCCATATTCTTCACCCAATCTCGCACAGTTCTGTATTTCTTTCTATTTTTTTGGTGAAATGCAGTGTACAAAAATGAAAAAGGTTTTTGTGTATGCCAATGTATGATGAAGTAGTATTATTTAGAGTTGTGATAAATGTTATTAAACATTTTTATTACCTAAAATGTTTTTTCTCATTAGTAAAAGGTCTAACATTTAGGGCTCTATTTTAACAATCTAGGT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa22524

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000077823	Nonsense	625	636	4	4

Genomic Location (Zv9):

Chromosome 14 (position 37549152)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	14	35988479
GRCz11	14	36328793

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

GAGAGGATGTTACTGTGTTCGCGTTCGAGCATCGACTCGCAGATGACATA[C/A]AAAAGTGACAGCTCTAGATCTGAGTATCTGTGCTAATGTATTGACCATCG

Long Flanking Sequence:

TTGCCAAGCGACACGCCACTAACAGTGGTTTACTTCCCATATGACGCCAAAGACGATAAGGAGACGGTGGATACAGAAGTTGGTCAAGGGAAGCTGCTTTTGGAGTATTTGATGCCTAATCAGGTCTACACTGTGTGTTTGGTTACTAAGAGTTCTGGGAAAGAGCAGTGTGTGGATTTCAGTACTTTGGAAATTGGTGGAGAAGAAGGCCAGAATAAAGTCTTGATGATCGCTAGCGCGATTGCATGCGCTATCGCGGTGCCGCTCATCGTGGTGTTGCTTTACAAGATATTGTGTCTTTATTGCAAAGGAAACAGTAGCAGGAATAACGGACCAGATGAAGACCTTTCCAAAGACACCTACGTGAAGTTCGAGACGCTCACCATGAAGCAGAGGACTCTAAACGGGCAGGCCAATGATCTGTGGGCACGAAGACAGACTCAAGAGTCGGAGAGGATGTTACTGTGTTCGCGTTCGAGCATCGACTCGCAGATGACATA[C/A]AAAAGTGACAGCTCTAGATCTGAGTATCTGTGCTAATGTATTGACCATCGGCTTTGTGTGTTATCTTTCCACACTTGGTGTTAGTCAGGCTGTGGTAAAATTAGTTATAAAAGATTAGCACTTGGTGTGCAATCAAACTCATTGCCTTACAAAGACTCATCTTGAGCCCACATTGTATTATCTTTTTATTCATTTATTTTTTTAAGAGCCATATTCTTCACCCAATCTCGCACAGTTCTGTATTTCTTTCTATTTTTTTGGTGAAATGCAGTGTACAAAAATGAAAAAGGTTTTTGTGTATGCCAATGTATGATGAAGTAGTATTATTTAGAGTTGTGATAAATGTTATTAAACATTTTTATTACCTAAAATGTTTTTTCTCATTAGTAAAAGGTCTAACATTTAGGGCTCTATTTTAACAATCTAGGTGCAAAGTCTAAAGCGCATAGCACAAAAGCGTTAAGGACCTGTCCGAATCCACTTTTGCTATATTAAGGTTG

Associated Phenotype:

Not determined